top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Cross Reference
CCDS CCDS14847.1
EMBL AK014076, AK149543, BC147272, ...show all
Fantom 3110023K06, C730035C17
GO GO:0001657, GO:0004364, GO:0005737, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Gsta3-002
OTTP OTTMUSP00000032415
OTTT OTTMUST00000065122
protein_id AAA37751.1, AAI47273.1, AAI47274.1, ...show all
Reactome R-MMU-1430728, R-MMU-156580, R-MMU-156590, ...show all
RefSeq_mRNA NM_001077353.2
RefSeq_peptide NP_001070821
UCSC uc007alk.2
UniParc UPI00000018D2
Uniprot/SWISSPROT P30115
Vega_transcript Gsta3-002, OTTMUST00000065122
Vega_translation 178820, OTTMUSP00000032415
Definition protein_id:ENSMUSP00000113262
translation:
MAGKPVLHYFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEI
DGMKLVQTKAILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEEKEAS
LAKIKEQTRNRYFPAFEKVLKSHGQDYLVGNRLSRADIALVELLYHVEELDPGVVDNFPL
LKALRSRVSNLPTVKKFLQPGSQRKPFDDAKCVESAKKIFS

Chromosome 1
Length
Position(start - end)
15,189
21,249,772 - 21,264,962
Orient to Chromosome plus
Link Location : (1:21249772-21264962)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Transcript ID ENSMUST00000121676
Reports
substitution
cSNPs2
Insertion19
Deletion29
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num1
synonymous substitutions 21260093 (p.Ile106Ile),
non-synonymous substitutions 21264865 (p.Asn190Thr),
B6 transcript
(ENSMUST00000121676)
MAGKPVLHYFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEI
DGMKLVQTKAILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEEKEAS
LAKIKEQTRNRYFPAFEKVLKSHGQDYLVGNRLSRADIALVELLYHVEELDPGVVDNFPL
LKALRSRVSNLPTVKKFLQPGSQRKPFDDAKCVESAKKIFS*
MSMv4 transcript
MAGKPVLHYFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEI
DGMKLVQTKAILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEEKEAS
LAKIKEQTRNRYFPAFEKVLKSHGQDYLVGNRLSRADIALVELLYHVEELDPGVVDNFPL
LKALRSRVSTLPTVKKFLQPGSQRKPFDDAKCVESAKKIFS*
homology99.55 (222 / 222)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Transcript ID ENSMUST00000121676
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCTTTTGCGGAGAAGGTAACATCTAGGACAGCCATGTCAATGTGAAGTTC
AAAGATAACATCTCTTTTTAGCATAAGCACATTCCCTCAATACTTGTGACATACTAATAA
TCACTACCTGAAACTCAGCTCGTTGTGGGGTCTGCTTAAATCCAACATAATTCAAACAGC
AGGTCAATGCAGTTGACAAAAATTTGATTGTAATCAAGCCACTACTGCTCAATCAGGGCC
ACAGATCAGACTTGGGAGCTGAACTAAGACCCTGAAGGGATGCTATCCATCATATTTATA
GTATGAAACCGTAAAGAGATGGGATGCTAGGGGGGCTATAGCATTGTCTAATCATACTTT
GATATAAGGGACTGAGCAAGGAAGTTTCCATTAATCAAGAGTGGAGTTGATTCCTGAGCC
TGGGAAGATGAACTTAGGTTGACCTTGCCAGCAAGTTGGAGAAGTTGTCCTTGAGATGTC
TGCACTCAGACAGCTGTTTCCTTACAACAGAAGCTGGTCAGCTACTGGGAAGTTCCCAGC
TCCCTAGGGCCTGAGACCTTGAATTTAATTTTTTTCTTAGGATTAAATGGAGTCTGAAAC
CAAACTGGTAGTACCTAGAATGAGGTTCTATTGCTTGTTCCCAACAAGATTATCTGTTCT
GTACCTAACCTGGTGGCCCAGTCCACAGAAGTACTCCCTGGTGTCACCAGAGTTCTCTTT
ATAACATCTGCCAGCTGAGATTTCCCACTTGCTTTAGCCCATCCTCATTGACAGCCGAAG
AGTTAACTCTGCTTGGAACAGGTTCTTCCAGCTTGCCATTGGCATTGAGGAAGAAACATA
TTAACCAACTCTTTAGCAACTCAGGCATGACATTGCATTTTTCTTCTAGTCCTTTATCTA
AATGTCTAGCCTCTGAACACTGTGGGAGTAGCTTTTCCCTTATTGGATTGTCTCCCCTTA
ACTGGGAAGGGCGTATTCAAATTTAATAAGTAGCTTACAAAACAGCAGAA
1 EXON 1 21,240,607 21,240,659 - - 53
ACTCTTGCATATGGTAAAAGCTAGCTTTTTAGAGGGAACAGCTTTTTAACAAG
INTRON 1 - 2 21,240,660 21,244,937 4,278
GTAAGTACTGAATCAAATCTCTCTC..........CCAGAAGGTGTGTCTGTTGTTGCAG
2 EXON 2 21,244,938 21,245,032 - - 95
GTGAACTGAAGAGTTGAGGGATAGAGTCCCAGAGAGATTTAGACTCCAAGCGGCAGTGCA
GGCACCAGGAGAGCCTACTTGAGGTACAGCACAAT
INTRON 2 - 3 21,245,033 21,249,750 4,718
GTAAGTTTTATAGCTCTGAGGGGAA..........CATGGTGTGCTTCATCCCTGTTTAG
3 EXON 3 21,249,751 21,249,858 - 0 108
AAAACCCAAGCAACTGCTGCCATGGCGGGGAAGCCAGTCCTTCATTACTTTGATGGCAGG
GGAAGAATGGAGCCTATCCGGTGGCTCTTGGCTGCAGCTGGTGTGGAG
INTRON 3 - 4 21,249,859 21,257,330 7,472
GTACGTTCTGACATGAGTGGAACCT..........CTTGTTTATTCTTTCTGTTTTCTAG
4 EXON 4 21,257,331 21,257,382 0 1 52
TTTGAAGAAAAATTTCTGAAAACTCGGGATGACCTGGCAAGGTTACGAAGTG
INTRON 4 - 5 21,257,383 21,258,847 1,465
GTAAGAAACAGATGTAAATGTTCCT..........CCTTTCTCTTTGTTTCGTCCAATAG
5 EXON 5 21,258,848 21,258,980 1 2 133
ATGGGAGTCTGATGTTCCAGCAAGTGCCCATGGTAGAGATCGACGGGATGAAACTGGTGC
AGACCAAAGCCATTCTCAACTACATTGCCTCCAAATACAACCTCTATGGGAAGGACATGA
AGGAGAGAGCCAT
INTRON 5 - 6 21,258,981 21,260,047 1,067
GTATGGTAGACTTTCTCTGGAAAAG..........GGCCGAATGCTTGTCTGTCTTTCAG
6 EXON 6 21,260,048 21,260,189 2 0 142
CATTGACATGTACACAGAAGGAGTGGCGGATCTGGAGATAATGATACTCTATTACCCCCA
CATGCCCCCTGAGGAGAAAGAGGCAAGCCTTGCCAAGATCAAGGAACAAACCAGGAACCG
TTACTTCCCTGCCTTTGAAAAG
INTRON 6 - 7 21,260,190 21,262,792 2,603
GTGAGTGGAAGCTGACAGAACTTCC..........CTAACTAACAACTTGAATTCCTCAG
7 EXON 7 21,262,793 21,262,924 0 0 132
GTGTTGAAGAGCCATGGACAAGATTATCTCGTTGGCAACAGGCTGAGCAGGGCTGATATT
GCCCTGGTTGAACTCCTCTACCATGTGGAAGAGCTGGACCCGGGCGTTGTGGACAACTTC
CCTCTCCTGAAA
INTRON 7 - 8 21,262,925 21,264,842 1,918
GTACTCTACATATCTTACCTCATGG..........TGAGGCTCTGCTTTGTCTGTTGCAG
8 EXON 8 21,264,843 21,265,021 0 - 179
GCGCTGAGAAGCAGAGTCAGCACCCTCCCCACAGTGAAGAAGTTTCTTCAACCTGGCAGC
CAGAGGAAGCCTTTTGATGACGCAAAATGTGTTGAGTCAGCAAAGAAGATTTTCAGTTAA
TTCAGGCAACTATGGATACATAGCCCCCACAAAGCCAACCTTCTAAAATTTTGCATCAC
3' upstream sequence
ATTGAAGTGTTTTGACTAAGTGTTGACCCTACTTAGAAAGCTAACAAGTTTTCTAAGGCA
TCTGTGTTAATTCAGGTAGACATGACTGACGAGGAACGGCCGGACGCTCTCTAGTTGTAG
TTAAAATTGAAATCATGATCACTTCCTCGGATATTTTCTTACTGTTCAATAAAACAAAAC
AAGCTTCTTAGACACTGGAGTATTCGAACATTGTCATTCAATAGCTGTCATATCCTTGTC
AAACGGAGAAATCTTCCTGTCAAATTCTGGTTGATGCAAAAATAATCTTTCCTTATGGAG
AGTGCCCTTCCTGACCAAATACACACAGATGTGTGCACACTCAAACTGTGAGGAACTCTT
TTCCTTTAACTTAGTAATGGTTTTCTTATTCAGTTATACAAACAATACATTTATGTTCAA
TATAGAGCAATTGTTTTCCCTGGGGCTGCATGAATGATGGATACAGCAGGGACAATCAAA
TTACCCAGCCACAGAATCTTGAATTTCTGTAATAAAAGTATTAAAAACTTAGGTATTCCT
AATACAGAACTGGACATTCTGTGTGTCCCATTCCTAAGGTTTCTATAACAATGTACCACA
AACTTTGTATCTTAAAATAATATAAACTTATTCTTGCTCAGTTCTGGGGGAGGTGTCTGA
CGTCTAAGTCTGCGATCCACTAGGTTCTCTCAGAAGGCTTTAATAACGAATCTTTCTTAG
CTTGGTGGCCAGTAACGCTGAAATACCTTGGCTTGCTGATATAATACTCAAATCTTTACA
TCTGTAGAGATCGTTCTTCCAGAAGACAGTATCAGGAGTTCCAGGTGGAACAGATGGAAC
ACTCTCTAGGACAGAATTTATCCCGAAGTCTTATGGATCAGCATACCTAGAGATACACCT
GCTAGACTCTGAATGTAAGAAACAGTAGTTCCTTTTTTTTTCTACTATGACAAAAAACAC
ATGAGAAAACTTTCTTGTTGTAGGTAATATTTAATCTCAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Gsta3 (ENSMUSG00000025934)
Transcript ID ENSMUST00000121676
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 222 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information