top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Cspp1 (ENSMUSG00000056763)
Cross Reference
GO GO:0000922, GO:0005515, GO:0005654, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Cspp1-006
OTTP OTTMUSP00000034271
OTTT OTTMUST00000067947
UCSC uc007ahj.1
UniParc UPI00000E933F
Uniprot/SWISSPROT B2RX88
Vega_transcript Cspp1-006, OTTMUST00000067947
Vega_translation 178697, OTTMUSP00000034271
Definition protein_id:ENSMUSP00000113663
translation:
MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ
QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTGETD
PSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPI
SQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEH
PSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTN
GRYLHLHFSSLYLLNTGVL

Chromosome 1
Length
Position(start - end)
21,788
10,045,086 - 10,066,875
Orient to Chromosome plus
Link Location : (1:10045086-10066875)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cspp1 (ENSMUSG00000056763)
Transcript ID ENSMUST00000122156
Reports
substitution
cSNPs3
Insertion27
Deletion49
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num1
synonymous substitutions 10047432 (p.Ala36Ala), 10066713 (p.Gln266Gln),
non-synonymous substitutions 10066691 (p.Gly259Glu),
B6 transcript
(ENSMUST00000122156)
MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ
QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTGETD
PSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPI
SQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEH
PSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTN
GRYLHLHFSSLYLLNTGVL*
MSMv4 transcript
MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ
QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTGETD
PSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPI
SQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEH
PSLSGSAGVPERRARRANEERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTN
GRYLHLHFSSLYLLNTGVL*
homology99.69 (320 / 320)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cspp1 (ENSMUSG00000056763)
Transcript ID ENSMUST00000122156
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTCGTAACACGGTTCTTAAAGACTTCTCCAGCTTCATCATCTTCTTTTAG
CTCCCCCAACCCAGTTTTTCATTCTATTAGAACTTTTTTCCTTGGCTTAGTAATATATTA
GTTTTTAGGCATTGCTTGAAATGCACTTCTTGACATTTCTGCTTTAGAGCACCCAGATTT
TAAAAAGCACAGCTCGGAGATGCCTTTCCTTAACTCTTCGTCAATAACTGCCCCTTCACA
GGAATTAGAAGGCTCTGTAGCTGCTTCACCTGGACCCCGGGGTTTTTGCAGTTCTGGAAC
TATGTAGTCCAGGCTGGCCTCAAACTCGAGAGCTGCCTGCTTGAGTGCTGGGATTCAAGG
CGTGCACCACTACTGCCCGTCTGTATCCTTTTCTAATGCAGGTGCTTTTGCCTGGGCTAC
AGGAGACCCTGTTTCAAAAAGTCAAGGAGCTGGGCAAACAAAACAGAGCAAGGACATTGC
AACATTCTTCTAATTCCAGTACTTGGGAGGTGGAGAATGGAGAATCAAGAGTTCCAACCC
CGCTTTCTCCCTGGACTATTGGAGACAAAATAACGAAACCAAAAATAAAAATAGAACCTT
CTTAAAGTATAACTTCGGGCACACTAGGGACATTAGAGTACATTAGTATCTTAAGTTCTT
TCTGAGAAGCTTGTGTAAGCTTGTTCCAGTGGTAACAATACACAGCCACTCGAAACATAC
AGAATAACATGTTGAAATGGTAATGAAAGCCCAGGACAGAGAGTTGACCAGACTGCTGGT
GCGGACATTCCTCCTCTCACATCCACACTTCGTGACTGGAGACCTTCCTGGGCTTGGATG
GCTGGGATTTAGCCTGGGAGTGGCCACATTTCAGGAATCCCTGGGCGCAGCAGCGGGTGC
ACCGGGTGGCCTCCGGGGCTGCAGGGGGCGCCCTCGGCCGCGCGGCCTCCGCCAGCAGCC
CGAGGGGCGGGGCCGCGCCTGGCCGTTGGTGGAGGGCGGGCGGGGGGCTG
1 EXON 1 10,039,773 10,039,879 - - 107
GGCCTGGGAGGCGGAGTCCTGAGCGGGCGACCGGTTTTTAGGTCCGCGCCGGGGTCGCCG
GAACCACCGACTGTGGAGCCCGCTGGGAGCGTGGCTTCTCGCTGGGA
INTRON 1 - 2 10,039,880 10,045,075 5,196
GTAAGTCGGTGGGTAGCGGGTGTGG..........CTCACTGAAGACTTTTTTTTTTCAG
2 EXON 2 10,045,076 10,045,184 - 0 109
AATCTACAAAATGGCAGATAGCTTGGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGC
CAAAGACAAAGCAGAATTGGAAAGTGATCCACCGTACATGGAGATGAAG
INTRON 2 - 3 10,045,185 10,047,423 2,239
GCAAGATTAGTAATTGTCTTGCAGT..........TGATTTGTAAATATGTCTTTTCCAG
3 EXON 3 10,047,424 10,047,526 0 1 103
GGAAAGGCATCAGAGAAACTCTCTGAAAACAGTAAAATATTAATCTCTATGGCTAAGGAG
AACATTCCACCAAGCAGCCAACAACAGCCCAAGGGACCCTTAG
INTRON 3 - 4 10,047,527 10,058,719 11,193
GTATGGTACTGTATGTGTGGAGCTA..........CGACTTAAGCTGTTTTCTTTTTTAG
4 EXON 4 10,058,720 10,058,823 1 0 104
GAATTGAATATGGCTTAAGTTTACCGCTTGGAGAAGATTATGAACAGAAGAAACATAAAT
TAAAAGAAGAATTGAGGCAAGATTATAGACGATATCTTACTCAG
INTRON 4 - 5 10,058,824 10,059,823 1,000
GTAAGTTGTTCTGTTAGTGAGTTGT..........AATGGTTTGTTTCTCTCCACTTTAG
5 EXON 5 10,059,824 10,059,847 0 0 24
GGCATTACACAAGCAAAGAGAAAG
INTRON 5 - 6 10,059,848 10,064,332 4,485
GTAGGGTTGCCTGCGTAATGTTCTC..........TATATTTTAATGTGCATATATACAG
6 EXON 6 10,064,333 10,064,413 0 0 81
AAAAATTTCCTATCTACTGGTGAAACAGACCCATCTACTCTGGGAGTTTCTCTTCCCATT
GATGAGCGGTTATCTGCCAAG
INTRON 6 - 7 10,064,414 10,065,322 909
GTAGGTGGATAGGAATAAGAGTTTC..........ATTGTTTTTCAATTTTTTTGTAAAG
7 EXON 7 10,065,323 10,065,421 0 0 99
GAAAGATTGAAACTTGAACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAA
TCCACAGAAAAAGTCAGACAGGTAGAAAAGAATATTGAG
INTRON 7 - 8 10,065,422 10,066,425 1,004
GTATGTTTTACTTTTATAAAGTGAT..........CTTTTTTTCTTTTTTAATTCAACAG
8 EXON 8 10,066,426 10,068,333 0 - 1,908
CCTAAGAGTCAAAGAAATAAAAACCCTATTAGTCAAGGTAAATCTGATCTACCTTTACAA
ATACAGACTGCATACACACATTCAGAGGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTG
TACCGACAGCTAGATGGTGAAATTGAATTAAGGAGCAGAAGACCGCTTAAACAAACAAAG
GAAGAAGTAGGCATTTCTGGTGCAGAACATCCAAGCCTTTCTGGCAGCGCTGGTGTCCCA
GAGAGAAGAGCCCGCAGGGCTAACGAGGAGCGGGTGCTTGACAGACAGCATTGCAGAGCC
GACCGAGACCCTGGTGTGAGTGAAGACATGGACGAGAGGTTTAGATTTGAAAGTGATTTT
GATAGAAGACTTTTGAGAGTGTATACAAATGGCAGGTATTTACATCTTCACTTTTCTTCT
CTGTATTTACTTAATACTGGTGTTTTATAGTTACATTAGGGAAAAGGAGCTTTATTTGAT
TTACCGTATTTAATTTAGTTATACTGTTTTGTGAAACACCATTTTATGTGCCATTGAAGG
GGGGAGATAAAGAAAACACTCTAAATGGGGACCTTGGTAAAGCTAGAAAGTGGTAAAGTG
TATCCCCTTAATCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGC
TTAACCAAGTAGGAGAGTAAAAAAAAAAAAAAACCCAAAAAACCCCCAAATTGTGCATGT
GAATTTAAATTCTAAAGCAGCAATGGATTCAGATCCACAGTCTGGATTCCTGTTGCCAGT
GGCTTCCAAAGAAATCTCAGGTTGTTTTGGATCATAGCTTCCCAGATGACTGACAGGGAT
AAAACCCAGTTCCCTACGCAGTAAGTTAAAACTAGGTTGATAGGCATCCTAATCTTACAT
GTTAAAATGTATGTAAAAAGGGCCATTGTAACATAGATGAAATGCAGTTTGTGCCTTTAC
TGGTTGTACATATTAAGTATCTTTATGTTTTTTAAATGGACTTTTATGTAATTGAAATGA
CATTAACTTTTCATAGTCATATTTTCCAGTGTTTTTTTACTTCCTTTAACTATTTTGTGA
TGCTGTTTGGAACTTCTTAACTATAAGTCGTTGTTTTTATTTACCATATTACATAACTTG
ATATATGTTTTCCTAACTATTAGCTATAGAAATACTATAGAGCCTACATTTGTCATTGAC
CTGCTAACTTGAAAGATTACTTGTAAATTTTGGGGCCTGTTTTGTTTAATAGCCTGAATA
TTTAATTTTTTAGTATTTTAGAAAATATTATCAGGAATTAATGTTATACTGTCAGTATTT
TGATTACTAATAACAATACAAAGATAACATCTGTCTTTATTCTGTATCTTAGTTTAGATA
ATTTAAATTCAAATTTAATATCAAGAATTAGAAATGTGGATCGTGTACTCTAGTTTCTTT
GAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCCAAATCCTTTAATAATATCTTA
TATTTAAAGTTTATTAAAAGACCTCTCAGTTCTCAGTTTGGGAACCACAGCACTCCTGGG
ATCTTGATGGTGTCTTCTCTGTACCTGAGAATTTTATAGAACTTTTATTTCCTTTTTATG
ATATTTACCTCCAGAATATAATGAAAACATAACTTTAAGTTTGGAATTTTATGAGACTTT
CGACAATTGATGCCTTGCTTTTCACATATGAAATCAAAACAACTTATTGTATTCTAATTC
TCTGAGGACTGCATCATAACGGCACGTATCTCATAAATGTAACGACCTTTACCAACTTCC
TTCAACTGTACTGAGAGTACTTAAGGCTGGTTCTTATGATCTCCATTCTGAACACTGTTT
CTTCAAACTAAAAGGCTACATTTTGTTAATATATCAGCTGCCATATCT
3' upstream sequence
CCATATGTTTGGCTGTTCCTCATGTTTCTTGATAATACAGGTTATATATCCACCTCTTCT
CATTGAAAAAAGAATTCACATTAGCCATTCCATAGGTTATATTTAGTGGGTGTAGTTATT
AGTAAATGAAATAACCCTATTTATTTTCTGAAATTTCCTTGTTCCTGCATTTTTTAAAGT
TAAGTTTTTGATCAGTTCTACTTTTATAGTGATGCTTTATTTTTATAAATTTGCTATCAG
TTTCTTTGTACTTATTTAGCAACTTCCTAAACATACCTGGTGTATAATGAATGAATGGTG
CGTTTTTTTCTTAAGCTAGGGCAGTGGAAGCTCTCTAGGAGAGAGCTCTTCTAAAGTCAT
AGGATTGGTCAGTGCTCTTAAATAATTCTCACAGTGGCTCTCACTGTGCCTAGTGATTTG
TATTCTGTGTGTTTGTGTGTATTGTTTATGTGTATGAACTAATGAGGAAAATTGATGTTC
AGGAGATTTCTGAAGTTGAATGTAAATAGGGTTTTTTTTTTAATGATACTTTGAATTATA
GATTCTTAAAATGTAGCCTGTGCTAGTGTTTATTATTTTTTAACTGAATAGAAGTTAATA
TATTATCTTTCAATGTTTTACTTTAGTATTAACTAGTCAAAGAAAATTTTCAGTATTAGA
AATGCTGTTCTTCAGTTTCTGTGTGATCAATGTGGTTAACATTTCCATTCAATTTAAATA
TAGTTGCATATTTATAATTAATAGATATTTAGTAACGTTCTGAAATAGTTCTTTCTCTGA
AGCTTGAATTTGTATGAATCACATAGACTAAGTGTCTAGTGTCCTATGTTCCTTCAGATT
TAATATGTAAGACAAAAACGAGAAATGTCTAATTAGAAGCCATTGGTGTTTGCTTCTCAC
TTTGTACCTTTAATTTTTCTTCAGAAAAGGTCGTTTTTAGTAATTTTAAAAAAGATTCAT
TTTTTAAAAGTTTTATGTGTGTGTATATATATGTGTATGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Cspp1 (ENSMUSG00000056763)
Transcript ID ENSMUST00000122156
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 320 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information