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Target CDS Information

Gene Symbol (Gene ID) Ankrd35 (ENSMUSG00000038354)
Cross Reference
EMBL AC112261
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Ankrd35-004
OTTP OTTMUSP00000070762
OTTT OTTMUST00000132849
RefSeq_mRNA_predicted XM_006501255.1
RefSeq_peptide_predicted XP_006501318.1
UCSC uc012cua.1
UniParc UPI000164C480
Uniprot/SPTREMBL D6RGN5
Vega_transcript Ankrd35-004, OTTMUST00000132849
Vega_translation 188204, OTTMUSP00000070762
Definition protein_id:ENSMUSP00000115316
translation:
MKRIFSCSSSQVAVEKWNRRDQKLLEAVQRGDVGRVAALASRKSARPTKLDSNGQSP

Chromosome 3
Length
Position(start - end)
7,855
96,670,411 - 96,678,267
Orient to Chromosome plus
Link Location : (3:96670411-96678267)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ankrd35 (ENSMUSG00000038354)
Transcript ID ENSMUST00000122960
Reports
substitution
cSNPs0
Insertion13
Deletion21
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000122960)
MKRIFSCSSSQVAVEKWNRRDQKLLEAVQRGDVGRVAALASRKSARPTKLDSNGQSP*
MSMv4 transcript
MKRIFSCSSSQVAVEKWNRRDQKLLEAVQRGDVGRVAALASRKSARPTKLDSNGQSP*
homology100.00 (58 / 58)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ankrd35 (ENSMUSG00000038354)
Transcript ID ENSMUST00000122960
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GGGCCTATAGCATCTTGGGGGGGCGGGGGTGGGGGTGGGGTCTGCTGCTA
AGCCTCACTACTTTAGTTCAAGCACCGGATTCACAAGGTGAATGGAGAAAGCCAACACCG
GTTGTCTTCTGACCTCCACAAGGGTGCCCACCCTTAGCGCATACTCACGCCTCAGTAAAT
GAATTAATGTAAAACACTTCTAAAAAGAATTTTGGGCTTTATTCCATAGGGTTCCATGAG
TATTTGGGTGGGCTTGCTTGGTTTACAGGGAGGAGAAAGGAGAGATGGGAAGGCCAGACC
AGTTGGCTGCAACTAATACTTGTCAAACAAGAATTACTAAGAAGTGAGTCTAAAGGATAA
GGAAGGTCGGACTTTTTGTTTGTTTGTTTGTTTCTTGGAGTGGGGAAGCAGACAGTAAAA
ACTCTCCCCTTGCTGCTTTCTAAGATCTGCGTTAGTGATCGGCTTGATCCTTTGAGTTTT
GTCCAACCTCTGGTTGCAGTGGGTCACAAATCACCCATTGGTGATCAAGTCTGCTTAGTG
CATCACGCTTCCAAACTCTTTAGAAGATCTTGGGGCGTTGGGAGGGAGGGGATGAAGCAC
ACACAGGTCATGGCTATGACTAAGAGTCATTAACTGGTAAAAGAGGTTGGTGACATCGAA
GCTTGTGGAGGTCCTTGAGAGGGGGCGGGGGCGGAACTGGGGGTGGAGCTCCACGCAGAA
AGACGGGGGACTTAGGGCCTGGAAGTCGCCGGTGCGGAGGCTGCGAGCATCCCTCTTGGA
TTCGGTAGGTAACTACAGGGGGCGGGCTTCGGCTGAAGGGCGGAACTTGAGAGCCAGCCA
GGGTGGCCGCAAAAGACTGCGGGCTTTTTGCCTCTGCAGGGACGGGGTTAGGCAGGGCCA
GAGGCGGGGTTTTAAGCCCAGCCTTCAGGTGAACGTCTAGGATTGAGCGGGGTGGGATCT
GGGGCGGGGCTTGGGGCGGGACCCAGTCTGCTTTTTGACAGCTGTCTTTC
1 EXON 1 96,670,327 96,670,449 - 0 123
GGCACAGCCATAGCCGAGTTGGGTTAGGAACTTGTGGCCCGGCTCTCTGCGCGTCCCCGT
CCCCCCGTGGCCCTAGCCCCGGCCATGAAGCGCATCTTCTCCTGCTCCAGTTCACAAGTG
GCG
INTRON 1 - 2 96,670,450 96,678,132 7,683
GTAGGTGCCAAATGTGTGGGAGAAG..........CACATAATCTGTAACTCCCGACTAG
2 EXON 2 96,678,133 96,678,267 0 - 135
GTGGAGAAATGGAACCGACGTGATCAGAAGCTGCTGGAGGCGGTGCAGCGGGGGGACGTG
GGACGCGTGGCTGCCTTGGCCTCTAGGAAGTCAGCCCGACCCACCAAACTAGACTCAAAT
GGCCAGTCCCCGTAA
INTRON 2 - 3 96,678,268 96,679,179 912
GTAAGTCTTTTTGACCCCACCCTGG..........TGTCTCTTGGCTTTGACCCTGGCAG
3 EXON 3 96,679,180 96,679,268 - - 89
GTTCCATCTGGCAGCCTCCAAAGGCCTGACAGAGTGTCTGACAATACTGCTTGCAAATGG
GGCTGATATCAACAGCAAGAACGAGGACG
INTRON 3 - 4 96,679,269 96,679,629 361
GTGAGTCAGCCAACCCTGTGCACGC..........CCCCTCTCTCCTTTTCTCTTTCCAG
4 EXON 4 96,679,630 96,679,694 - - 65
GAAGCACTGCCCTTCATTTGGCCACCATCTCCTGTCAGCCACAGTGTGTGAAGGTCTTGC
TTCAG
INTRON 4 - 5 96,679,695 96,680,470 776
GTAAAGGCAGTCCGTTGGTGCTCCT..........TGCTTCTCTTTGTGGCTATTTACAG
5 EXON 5 96,680,471 96,680,528 - - 58
CACGGTGCTAATGAAGATGCTGTGGATGCAGAAAATCGCAGTCCATTACACTGGGCAG
INTRON 5 - 6 96,680,529 96,680,626 98
GTGTGTGCCTGGGGAGCAGGATGGG..........TCCAAATGTCTTTCAATTCTTCCAG
6 EXON 6 96,680,627 96,680,697 - - 71
CCTCCTCTGGCTGCGCCTCAAGTGTCCTCCTGCTGTGTGACCACGAAGCCTTCCTGGACG
TGCTGGATAAT
INTRON 6 - 7 96,680,698 96,680,961 264
GTGAGTATCAGATGGGCCAATGGGT..........CCACACCTTCCCTCAACCTCTGCAG
7 EXON 7 96,680,962 96,681,068 - - 107
GATGGACGCACACCCCTGATGATTGCATCGCTGGGTGGTCATGCAGCTATCTGCTCACAG
CTGTTGCAGAGAGGTGCCCGAGTTAATGTCACAGACAAGGATGACAA
INTRON 7 - 8 96,681,069 96,682,026 958
GTGAGCCATCTCTATGTCCTCTCCC..........GCTCCAGGTTTGTCTCCACCCTCAG
8 EXON 8 96,682,027 96,682,211 - - 185
ATCAGCTTTGATCCTGGCCTGTGAGAAAGGCAGCGCTGAGGTGGCCGAGCTGCTCCTGAG
CCATGGAGCGGACGCTGGAGCGGTGGACAGTTTGGGACACAACGCTCTTCATTATGCTTT
GCGTACACAAGACAAGGAGCTGTGGAGGCTGTTACAGCAGGCCCTGAACCGGCGGCGGAG
AGGCG
INTRON 8 - 9 96,682,212 96,682,993 782
GTAAAAGTCTTTCTGTGCTCTCAAG..........CTTTGCCCCATGTCTTTTCTTATAG
9 EXON 9 96,682,994 96,683,031 - - 38
GTCATGGACTGGTTCAACACCCAGATCATCCATCTCAG
INTRON 9 - 10 96,683,032 96,683,182 151
GTATGACCCCTAAGAGTCTCCCCCT..........ACATCACTGCTCTTTTTTAACATAG
10 EXON 10 96,683,183 96,685,174 - - 1,992
GCCTCTTCATGTGAGCCTCGGGTGGGATCTCCTCCTAAGAACTCACGGAAAGTGGAGCCT
GAGGAAGAGCAGGAGGAGGAGGGGGAGGAGCGGTGCTCAGAAGAGTGGAGGTGGAAGTTT
GAGGAGGAGCAGAGGAAAGTTCATCAGCTGGAGCAGGAGCTCGTGCGAAAGACAGATGAG
TGCAAGGCTCACGCTGCAGCCTTCTCAAGCCTAGAGGAGCAGATTCGAGAGCAAGCGCAA
GAACTAGGCCATCTCCTAGTGCAAGAACCGGGAGCTCCAGGAAATCAAGGCCCTGGTCTC
CGGCCTGAGGGAGATGGTATGGAGGAGGGTTGTCCCCTGAACCTGCTGGCTGAGCGGATC
CAAGAGCTGAAGAAGCAGCAGAAGGCACTGGCTACAATAAACCCAACATTAGTTCCCAAG
AGAGCTGAAGAATTAGCCCCGGCAGAGATCCATCATGAAGTACACAGAAACTCCCAACCA
GAGCAGGGGCTGCCCCAGGGCCCAAGTTCAGAAACCACCGGGAAAGCCACAGGACAGCAA
TCAAACACCAATGGGGGGCAGAACCTTGGCCTCCAGAACACTGAGCAGGTGTGTGCTGGC
CAGAAGGAGAGGACCCCAGCTCCAGGGACTGAAACAGCAGGCACAGTGGGAGAACCAGTG
GGCATAGCCATGAATCAGCTCCTCCTACAGCTAAGGGAAGAGCTGGCTGCAGTGTGGCGA
GAAAAGGATGCTGCCAGAGGGGCTTTGTCAAGACCAGTTCTGGAGGGAGCCCTGGGGACT
CCCAGAGCTGAGGCTGCAGCAGCTGCCTGGGAAAAGATGGAAGCCAGGCTTGAGAGGGTG
CTGGTAAGGTTAGATGGAGCAAAGATGGGACTGCATGTGAAACCTGAGGTCCCTGTCCAG
GGGTCCAGAGACGGAGCCTCGAAGGCAGTCCCGGGATGCTCTAAAGAGCAGGAAGAAAAG
AAGGCTCCTGGAACCAGAGGAGAGCCCTTAGGGGCCCCTGGAAAAGAACAGGCCTTAGGA
GGAGGCCTGGCAAAGGGACAGCTGGAGAAAGAGGTGTCAGCTTTGAGACTGAGCAATAGC
AACTTGCTGGAGGAATTGGGAGAGTTGGGGCGCGAGAGACAACGCTTGCAGGGAGAGCTG
CAGTCCTTGACCCAGAGGCTACACCGGGAGTTTGTGCCCAAGCCTGAGGCACAGGTCCAG
CTACAGCAGTTGCGGAGGAGCGTGGGGATGTTGACAGAGGAACTGGCCATGGAGAAGGAG
GCCACAGATAAGCTGCGCAGGCGACTGGCCTCCCAGACTAGCGGCCTCCAAGGACTGTGG
AAATGCCTACCCCCAGACCTCGTGGGCAAGGGGAATACACAGAGTACAGCTGCAGAACCC
CTGGAGGAGCTGCAGGCCTGCATCAGCACCCTGGTGGATAGGCACCTTGAGGCTCAACGG
GTGCTGGCTCGGTTGGAAGAGGAAAACCAGCAGCTGAGGGGATCCTTGGCTCCCTGTGGG
GAACCAGAGGCCTCCCTCAAGGTTACAGCATCCCCGCAAGTGGCCGCCCTGGAGGAAGAT
CTGGGGATGCTAGAGGAAGAGCTACGGGCCGTGCAGGCCACGATGGGTGGGAAGAGCCAG
GAGATTTGCAAGCTGAAACAGCTGCTCTACCAAGCCACGGAAGAAGTGGCCGAGCTGAGA
GCTCGGGAAGCAGCCAGCCTGCGCCAGCACGAGAAGACGCGAGGCTCGCTGGTGGCCCAG
GCCCAGGCTTGGGGACAGGAGCTCAAAGTTGTGCTGGAGAAGTACAACACAGCCTGTCGG
GAAATGACTCGATTGCGGGACACTGTGGCGGAGGAACGTCGCCGCAGCGAGGACCTGGCG
GCTAGGGCGGCGGAGCAGGAGCGCCAGGCTGGCGAGATGCGCGGGCGCTCGGAGCAGTTT
GAGAAAACTGCTGAGCTCCTGAAAGAGAAGACAAACCACCTCATCGGGGCTTGCCGGGAC
AAGGAAGCCAAG
INTRON 10 - 11 96,685,175 96,689,145 3,971
GTGAGCACCGAGGTATCCTTGAGAG..........TCCCTTTTTTTCCGTTTGGCCTTAG
11 EXON 11 96,689,146 96,689,235 - - 90
ATCAAGGAGTTGCTGAAGAAGCTAGAGCAGCTTTCTGAAGAAGTTCTAGAAGTCCGGGGC
GAGAATGCCCACCTCGCCCTACAGCTGCAG
INTRON 11 - 12 96,689,236 96,689,444 209
GTATATTTTGGCCTGCAGGATGAAT..........ACTTCCAAAGGGCGTTCCCTTCCAG
12 EXON 12 96,689,445 96,689,510 - - 66
GACTCCCAGAAGAACCACGAAGAGATCATCTCCACATACAGGAGTCATCTACTGAATGCT
GCTCGG
INTRON 12 - 13 96,689,511 96,690,191 681
GTGAGCTTGCTGGAGTCTGGGAGGC..........TTTATATCCTTCCTGCTACCCCCAG
13 EXON 13 96,690,192 96,690,296 - - 105
GGCTACATGGAACAAGACGTCTACAACATCCTACTTCGAATCCTCAGCATGCAGGAGTGA
GGCAGGCTCACTGTGTGCCCTCAGGGATAAAGGCATTTCTCTTTT
INTRON 13 - 14 96,690,297 96,690,838 542
GTGAGTTGTGGGTGGAGGCTAAAGA..........TTCATCTTTGAATTTCTTCTTTTAG
14 EXON 14 96,690,839 96,691,009 - - 171
GGAATAATGAGGCTCGATCAAGCTGTGGTGGGCAGGTGGGTGGACGGTGATTACCCACTA
GTGGTGCTGTGGGTGGGGCTTCACAGGACACACGAACTCCAGACCTGAAAACCTGGACCC
TGGAATCAGCACAGATGAGACCTGAATTGTGGATGTAAATTAGCTCTGTGG
3' upstream sequence
AAAATAAAGCAGAAAACAGATGGTCCTATTGTTGTGGTTTTTGTCAAAAAGGGTGGAATG
GGGGAATTTTTTTTTCTTCCCGAAACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAA
CTCACTCTGTAGACCAGGATGGTCTCGAGCTCAGAAATCCGTCTGCCTCTGCCTCCCAAG
TGCTGGGATTAAAGGCATGCGCCACCACTGCCTGGCAAGAATTTTTTAAAAAGAATTATT
TATTTATTTTATGTATATGAGTACACTGTAGCTGTCTTCACACACACCAGAAGAGGGCAT
CGGATCCTATTATAGATAGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACACAGGAC
CTCTGGAAGAGCCGCCAATGCTCTTAACCACTGAGCCATCTCTCCAGCCCAGGGGAAAAA
AAAGAATCTTGATCAAACAATTTAAAAAATAAGCTGGGTGTGGTATAGACCTTAATCTCA
GTGCTTGGGAGGTGGGGGCAGGGAGAGCAAATTTCAGGACCAGCCTTTGCTACATAGTGA
GGCCAATCAGCCTGGGCTACAATTGCCACTCTGTCTAAAAACAAACAAACAAACAAACAA
ACAAACAAACAAGCAAACTACATCCTTTCTCTTCCCCTGTTAGCAAAGTTCCTCACTAGA
GTGATACATTTGTAACTGTGTCAGTACACACTGCACAGGCTTTCATAGACCATAGCAGCA
GCTACTCATTAGACAGGTTTGCAATGATAGTGCTCACACAGTAATCACAGGAGTTACAGT
CATAGGGATTGTTTATGCTCTGCTCTGCCTGTTGCTTCCTTCCCTCTCCTAGCTTCTGGC
CTTTTACATTTTTATTTATTTATTTTTGAGACAGGGTTTCTCTGTGTGGTCCTGGCTGTC
CTGGAGCTCACTATGTAGATCAGGCTGGCCTCGAACTCACAGATTCCAACTGTGATTCCA
ACGTCAAGGGAATTGGACACCTCTGACCTCAGAGGGTACT..........

Sequence Detail Report

Gene Symbol (Gene ID) Ankrd35 (ENSMUSG00000038354)
Transcript ID ENSMUST00000122960
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 58 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information