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Target CDS Information

Gene Symbol (Gene ID) Hk3 (ENSMUSG00000025877)
Cross Reference
CCDS CCDS56884.1
EMBL AC154610
GO GO:0001678, GO:0004340, GO:0004396, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Hk3-004
OTTP OTTMUSP00000043476
OTTT OTTMUST00000081311
RefSeq_mRNA NM_001206391.1
RefSeq_peptide NP_001193320
UCSC uc007qps.2
UniParc UPI0001889D13
Uniprot/SPTREMBL E9Q8S8
Vega_transcript Hk3-004, OTTMUST00000081311
Vega_translation 214550, OTTMUSP00000043476
Definition protein_id:ENSMUSP00000116717
translation:
MATIGPSGLHPGERASVCPHEGVPRPSGSLELECLQQFKVTRTQLQQIQASLLCSMEQAL
KGQDSPAPSVRMLPTYVRSTPHGTEQGDFLVLELGATGASLRVLWVTLTGTKECRVEPRS
REFVIPQEVILGAGQQLFDFAARCLSEFLDAYPVENQGLKLGFNFSFPCHQTGLDRSTLI
SWTKGFRCSGVEGQDVVQLLRDAIQRQGTYRIDVVAMVNDTVGTMMGCELGTRPCEVGLI
VDTGTNACYMEEARHVAALDEDRGRTCVSIEWGSFYDEDALGPVLTTFDSALDRESLTPG
AQRFEKMIGGLYLGELVRLVLVHLTQHGVLFDGCASPALLSQGCILLDHVAEMEDTATGT
ARVHTILQDLGLSPRASDAELVQYVCVAVCTRAAQLCAAALAAVLSRLQHSREQQTLQVA
VATGGRVFERHPRRILEETLAPFQLTLEQMTVVQAQMREAMIRGLQGEASSLRMLPTYVR
ATPDGSERGDFLALDLGGTNFRVLLVRVAEGSVQIINQVYSIPECRAQGSGQKLFDHIVD
CIVDFQKRQGLSGQSLPLGFTFSFPCKQLGLDQGILLNWTKGFNASGCEGQDVVYLLREA
IRRRQAVELNVVAIVNDTVGTMMSCGYDDPRCEMGLIVGTGTNACYMEELRNVASVPGDS
GLMCINMEWGAFGDDGSLGTLSTRFDTSVDQASINPGKQRFEKMISGMYLGEIVRHILLH
LTNLGVLFRGQKTQCLQARDIFKTKFLSEIESDSLALRQVRAILEDLGLTLTSDDALMVL
EVCQAVSRRAAQLCGAGVAAVVEKIRENRGLQELTVSVGVDGTLYKLHPHFSKLVSATVR
KLAPQCTVTFLQSEDGSGKGAALVTAVACRLTQMAHV

Chromosome 13
Length
Position(start - end)
13,251
55,006,171 - 55,019,423
Orient to Chromosome minus
Link Location : (13:55006171-55019423)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Hk3 (ENSMUSG00000025877)
Transcript ID ENSMUST00000123097
Reports
substitution
cSNPs12
Insertion11
Deletion11
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num9
non-synonymous num3
synonymous substitutions 55006477 (p.Ile805Ile), 55010968 (p.Ala509Ala), 55011149 (p.Ser486Ser), 55011158 (p.Pro483Pro), 55013305 (p.Asp277Asp), 55013398 (p.Asn246Asn), 55014286 (p.Gly190Gly), 55014289 (p.Ser189Ser), 55014526 (p.Arg143Arg),
non-synonymous substitutions 55007081 (p.Gly697Asp), 55011259 (p.Met450Leu), 55012174 (p.Tyr384Cys),
B6 transcript
(ENSMUST00000123097)
MATIGPSGLHPGERASVCPHEGVPRPSGSLELECLQQFKVTRTQLQQIQASLLCSMEQAL
KGQDSPAPSVRMLPTYVRSTPHGTEQGDFLVLELGATGASLRVLWVTLTGTKECRVEPRS
REFVIPQEVILGAGQQLFDFAARCLSEFLDAYPVENQGLKLGFNFSFPCHQTGLDRSTLI
SWTKGFRCSGVEGQDVVQLLRDAIQRQGTYRIDVVAMVNDTVGTMMGCELGTRPCEVGLI
VDTGTNACYMEEARHVAALDEDRGRTCVSIEWGSFYDEDALGPVLTTFDSALDRESLTPG
AQRFEKMIGGLYLGELVRLVLVHLTQHGVLFDGCASPALLSQGCILLDHVAEMEDTATGT
ARVHTILQDLGLSPRASDAELVQYVCVAVCTRAAQLCAAALAAVLSRLQHSREQQTLQVA
VATGGRVFERHPRRILEETLAPFQLTLEQMTVVQAQMREAMIRGLQGEASSLRMLPTYVR
ATPDGSERGDFLALDLGGTNFRVLLVRVAEGSVQIINQVYSIPECRAQGSGQKLFDHIVD
CIVDFQKRQGLSGQSLPLGFTFSFPCKQLGLDQGILLNWTKGFNASGCEGQDVVYLLREA
IRRRQAVELNVVAIVNDTVGTMMSCGYDDPRCEMGLIVGTGTNACYMEELRNVASVPGDS
GLMCINMEWGAFGDDGSLGTLSTRFDTSVDQASINPGKQRFEKMISGMYLGEIVRHILLH
LTNLGVLFRGQKTQCLQARDIFKTKFLSEIESDSLALRQVRAILEDLGLTLTSDDALMVL
EVCQAVSRRAAQLCGAGVAAVVEKIRENRGLQELTVSVGVDGTLYKLHPHFSKLVSATVR
KLAPQCTVTFLQSEDGSGKGAALVTAVACRLTQMAHV*
MSMv4 transcript
MATIGPSGLHPGERASVCPHEGVPRPSGSLELECLQQFKVTRTQLQQIQASLLCSMEQAL
KGQDSPAPSVRMLPTYVRSTPHGTEQGDFLVLELGATGASLRVLWVTLTGTKECRVEPRS
REFVIPQEVILGAGQQLFDFAARCLSEFLDAYPVENQGLKLGFNFSFPCHQTGLDRSTLI
SWTKGFRCSGVEGQDVVQLLRDAIQRQGTYRIDVVAMVNDTVGTMMGCELGTRPCEVGLI
VDTGTNACYMEEARHVAALDEDRGRTCVSIEWGSFYDEDALGPVLTTFDSALDRESLTPG
AQRFEKMIGGLYLGELVRLVLVHLTQHGVLFDGCASPALLSQGCILLDHVAEMEDTATGT
ARVHTILQDLGLSPRASDAELVQCVCVAVCTRAAQLCAAALAAVLSRLQHSREQQTLQVA
VATGGRVFERHPRRILEETLAPFQLTLEQLTVVQAQMREAMIRGLQGEASSLRMLPTYVR
ATPDGSERGDFLALDLGGTNFRVLLVRVAEGSVQIINQVYSIPECRAQGSGQKLFDHIVD
CIVDFQKRQGLSGQSLPLGFTFSFPCKQLGLDQGILLNWTKGFNASGCEGQDVVYLLREA
IRRRQAVELNVVAIVNDTVGTMMSCGYDDPRCEMGLIVGTGTNACYMEELRNVASVPGDS
GLMCINMEWGAFGDDGSLGTLSTRFDTSVDQASINPDKQRFEKMISGMYLGEIVRHILLH
LTNLGVLFRGQKTQCLQARDIFKTKFLSEIESDSLALRQVRAILEDLGLTLTSDDALMVL
EVCQAVSRRAAQLCGAGVAAVVEKIRENRGLQELTVSVGVDGTLYKLHPHFSKLVSATVR
KLAPQCTVTFLQSEDGSGKGAALVTAVACRLTQMAHV*
homology99.66 (878 / 878)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Hk3 (ENSMUSG00000025877)
Transcript ID ENSMUST00000123097
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGGCCAGTAGAGTAGCTCCACAGAAGCTTAAGAACTCTATCTTCCACAAG
AGAAGACCCCCAGGCAAACCTCTTGCCCCATCTTGCCTTATGGACTCTTTAGACTTCTCG
GCCTGGCAGTTACTTCTTCCGCCATGTATCTCAACTACGGGCATTCTCATTAGGTCCTGA
GAGCTATACCTGATTCTATCACACACACACACACACACACACACACACACACACGACTCT
TGACTGCATACATACTCTCTTCTTTGTGAAAGGACTTCACCAACTTGCCCTGCCCACTCT
CCTGCAGTCATGATGGCCCTTCCTCTTAGGCTCCTACATTGCTTCTTACACAGTTCTGCT
TACTACATTTTGACACGTTGCCTAGTTCAACCACAAATTTCTAGGCTGGTCTCCGCTTCT
TTCCAAGGAACTTGGCACTTGAAAACTTTGTGTATAACACGAACAGCACTCCTAGCGCTG
CTGAGAGAATATTTTGGAGTTCTTAACCTAGTTGGGCCTTCAACTTCCTGTGGTCATCTG
GCTTTTTTGTACCATGGCCCTGCCCATTCTGGGCTCCGTTGAGAGCAGATTTGTAGGGAA
GTGCCCTTTCCTGAATTAGCAGATTTCGGTTAAGTGGCTACAGAGGAAGGTGGAGCTTGG
GGAGCTGACCCAGAGTTTTCACTTTTGAGTTTAGTCCAGTATCACTGTGGTCATATTTGG
GAGAAGAGCTGAGCCCCCGAGGAAGGTGATCAACTTCTGAATCTCCCAGGTAAGCACTTC
CTCTGATTCCTGCAGGCCTCATCTCAAGCCCTTGGCTTATCCTATGGCTAATGGAGGTTA
GCAAGACTGTGCTATGAGTTCTCACTGGTGACGGTGGTGCCCAGCCTCAGGACCGGTCTC
TAGAATACCATTCAAAAGCAGCGCTTTGGAACCATGTCTGATTCAGATGAGAAAAGCCAA
GAAGCTCTTAATTCAAACATGAGTAGACTTTTGACTGGCTTCTGGTGACA
1 EXON 1 55,020,770 55,020,904 - - 135
GTGGAATGGAGACATGCCCCTCACTGGAAGAAGAGAGAGGTCCAAATGTATGAACCTAGA
GTTTAAATCCTAGGGTTCCCTGCAGGAAGCCTCATCGTCTGGCACGTGCGGAGTAAATGT
TGAGTGTGCGAGCAG
INTRON 1 - 2 55,019,448 55,020,769 1,322
GTAAGTATGTGAATGATTGTGTTAG..........TCCAGTTATCCCTTCTCTCCTATAG
2 EXON 2 55,019,328 55,019,447 - 0 120
GTAGTCAATACCCATTGTGGAAACATGGCCACCATTGGGCCTTCTGGCCTGCATCCTGGA
GAAAGAGCCTCAGTCTGCCCACACGAGGGCGTGCCAAGGCCCTCAGGTAGCTTAGAACTG
INTRON 2 - 3 55,015,130 55,019,327 4,198
GTAAGCAGAGCACTGGGTACCAATT..........GCTTGCTTCTTCTTCCCACATGCAG
3 EXON 3 55,014,973 55,015,129 0 1 157
GAATGCTTGCAGCAATTCAAGGTGACCAGGACACAGTTGCAGCAGATCCAAGCCAGTCTC
CTGTGCTCCATGGAGCAGGCACTGAAGGGACAGGACAGTCCCGCTCCTTCTGTCCGGATG
CTGCCCACATACGTGAGGTCCACACCACACGGCACCG
INTRON 3 - 4 55,014,781 55,014,972 192
GTGGGTAACACAGACTCGGATGGGC..........TTTCTATGACCTGTCTGCCGTCTAG
4 EXON 4 55,014,626 55,014,780 1 0 155
AGCAAGGGGATTTCCTGGTGCTGGAGCTGGGGGCCACAGGAGCATCACTACGTGTGTTGT
GGGTAACACTGACAGGCACCAAAGAATGCCGGGTGGAGCCCAGGAGCCGGGAGTTTGTGA
TTCCTCAAGAGGTGATCCTAGGTGCTGGCCAGCAG
INTRON 4 - 5 55,014,547 55,014,625 79
GTGAGCAGTCAGGGTGCCTCGTCTG..........CTAAGCACGCTTCTTGTTCCCATAG
5 EXON 5 55,014,427 55,014,546 0 0 120
CTCTTTGACTTTGCTGCCCGCTGCCTCTCTGAATTCCTGGATGCATACCCCGTGGAGAAT
CAGGGTCTGAAGCTTGGGTTCAATTTCTCTTTTCCTTGTCACCAGACAGGCTTGGACAGG
INTRON 5 - 6 55,014,328 55,014,426 99
GTGAGCTTGGGGGGCACATGGGGTC..........AATAACCCAGCTTCTCTGTCCCCAG
6 EXON 6 55,014,232 55,014,327 0 0 96
AGCACCCTCATTTCCTGGACAAAAGGTTTTAGGTGCAGTGGTGTGGAAGGCCAGGATGTG
GTCCAGTTGCTAAGAGATGCCATTCAGAGGCAGGGG
INTRON 6 - 7 55,013,587 55,014,231 645
GTAAGAGAAGGTCAGCGTGATGGAG..........GACTCCCTGTTCTCTCCATTGCCAG
7 EXON 7 55,013,487 55,013,586 0 1 100
ACCTACAGGATTGATGTGGTAGCCATGGTGAATGACACGGTGGGCACCATGATGGGCTGT
GAGCTGGGCACCAGGCCGTGTGAAGTCGGGCTGATTGTAG
INTRON 7 - 8 55,013,412 55,013,486 75
GTGAGCCAGGGCCCGTTTGGAATGA..........GCTCTGATGGGGTCCTTCCCACCAG
8 EXON 8 55,013,228 55,013,411 1 2 184
ACACCGGTACCAATGCGTGCTACATGGAGGAGGCGCGGCACGTGGCCGCTCTGGATGAGG
ACCGCGGCCGCACCTGTGTCAGCATCGAGTGGGGCTCCTTCTATGATGAAGATGCTCTAG
GGCCAGTACTGACCACCTTCGACTCTGCCCTGGACCGCGAGTCCCTGACTCCTGGTGCTC
AAAG
INTRON 8 - 9 55,012,598 55,013,227 630
GTGGTGGCCCGGCGGTGGTTTCCCT..........CGTCTAGCCCCTCCCTCCACCGTAG
9 EXON 9 55,012,442 55,012,597 2 2 156
GTTTGAGAAGATGATTGGAGGCCTTTACCTGGGTGAGCTGGTGAGGCTGGTTCTGGTCCA
CTTGACCCAGCACGGGGTCCTCTTTGATGGCTGCGCCTCTCCTGCGTTGCTGAGTCAAGG
CTGTATCCTCCTGGACCACGTGGCTGAGATGGAGGA
INTRON 9 - 10 55,012,261 55,012,441 181
GTACGGAAGGGAGGCTTGCAGCTTA..........TGTGTCTTCACCCTCCTCTTTGCAG
10 EXON 10 55,012,027 55,012,260 2 2 234
CACCGCCACTGGGACAGCCCGCGTCCACACCATCCTGCAGGACTTGGGTCTGAGCCCTCG
GGCCTCAGATGCTGAACTGGTGCAATGTGTGTGCGTGGCTGTGTGCACACGGGCTGCCCA
GCTCTGTGCGGCTGCCCTGGCTGCAGTCCTCTCCCGCCTCCAGCACAGCAGGGAGCAGCA
GACATTGCAAGTGGCTGTGGCCACTGGAGGGCGAGTGTTTGAACGACACCCCAG
INTRON 10 - 11 55,011,309 55,012,026 718
GTATTCTGAGGATAGGATGTGAGCA..........TGGCTGCCCGCCTGGCTGCTCACAG
11 EXON 11 55,011,148 55,011,308 2 1 161
GCGCATCCTGGAAGAGACCCTGGCACCATTTCAGCTGACCTTGGAGCAGCTGACAGTGGT
GCAGGCACAAATGCGGGAAGCCATGATCAGGGGGCTTCAAGGAGAGGCCTCCTCCCTCCG
CATGCTGCCCACTTACGTCCGAGCGACGCCTGACGGCAGTG
INTRON 11 - 12 55,011,036 55,011,147 112
GTGAGCACCTGGCCTGAGTGTGGGC..........GGTACCGAGTGTCTCTGTCCCACAG
12 EXON 12 55,010,896 55,011,035 1 0 140
AGCGAGGTGATTTCCTGGCCTTGGACCTAGGGGGCACCAACTTCCGGGTCCTGTTGGTAC
GAGTGGCCGAGGGCAGTGTGCAGATCATCAACCAGGTCTACTCCATTCCTGAGTGTAGAG
CCCAGGGCTCTGGACAGAAG
INTRON 12 - 13 55,010,817 55,010,895 79
GTATTCATGGGTCGGGTCTTGACGT..........CCCCCTGACATACCCTCTCCTGCAG
13 EXON 13 55,010,697 55,010,816 0 0 120
CTCTTTGACCATATTGTGGACTGCATCGTGGACTTCCAGAAGAGGCAGGGCCTTAGTGGA
CAGAGCCTACCCCTGGGTTTCACCTTCTCTTTCCCATGCAAGCAGCTTGGCCTGGACCAG
INTRON 13 - 14 55,009,049 55,010,696 1,648
GTAAGGGAATTAAGTTCAAGAAGTG..........TTCTGTCTTCTTAATCCCATCCCAG
14 EXON 14 55,008,953 55,009,048 0 0 96
GGCATCCTCCTGAATTGGACTAAGGGGTTCAATGCATCAGGCTGTGAGGGCCAGGATGTT
GTGTATCTATTACGGGAAGCCATTAGGCGCAGACAG
INTRON 14 - 15 55,008,775 55,008,952 178
GTAGGAGTCTACCTCCAGGGGTGCT..........ACTAGCAGCATCCGTTTGCATGCAG
15 EXON 15 55,008,675 55,008,774 0 1 100
GCAGTGGAGCTGAATGTGGTTGCCATTGTCAATGACACGGTGGGGACCATGATGTCCTGT
GGCTATGATGATCCCCGTTGTGAGATGGGCCTCATTGTCG
INTRON 15 - 16 55,007,256 55,008,674 1,419
GTAAGGAGGGTCTTGCCCTCTGTGC..........TCCCTTGGCCCCGGCCTGTCTACAG
16 EXON 16 55,007,072 55,007,255 1 2 184
GAACCGGCACCAACGCCTGTTACATGGAAGAGCTCCGCAATGTGGCAAGTGTGCCTGGGG
ACTCGGGCCTCATGTGCATCAACATGGAGTGGGGTGCCTTTGGGGATGATGGCTCACTGG
GCACACTCAGCACCCGCTTTGACACCAGTGTGGACCAGGCATCCATCAATCCAGACAAAC
AGAG
INTRON 16 - 17 55,006,962 55,007,071 110
GTATATATGGCTTAGGCCCAGGCCA..........CCTGCATACACCTGCCTTCATTCAG
17 EXON 17 55,006,806 55,006,961 2 2 156
GTTTGAGAAAATGATCAGCGGTATGTACTTGGGGGAGATCGTCCGCCATATCCTCCTGCA
CTTAACCAATCTCGGAGTTCTCTTCCGAGGCCAGAAGACTCAATGCCTTCAGGCCAGGGA
CATCTTCAAGACTAAGTTCCTCTCTGAGATCGAAAG
INTRON 17 - 18 55,006,637 55,006,805 169
GTACCTGTGTTGCAAGTGAGTTTGT..........CTATCCTGTTCCTTCCTGGCCCCAG
18 EXON 18 55,006,403 55,006,636 2 2 234
TGATAGCCTGGCCCTGCGTCAGGTCCGAGCCATCCTGGAAGATCTGGGGCTGACTCTGAC
ATCTGATGACGCCTTGATGGTCCTGGAAGTGTGCCAGGCTGTGTCTCGCAGGGCTGCCCA
ACTCTGTGGGGCAGGTGTGGCTGCCGTGGTGGAGAAGATACGGGAGAACCGGGGCCTGCA
GGAGCTGACAGTGTCTGTGGGAGTAGATGGGACACTCTACAAGCTACATCCTCA
INTRON 18 - 19 55,006,316 55,006,402 87
GTGAGTCTGGGTAGGTGGGTCAGGA..........TCACCTCAGCCGCTTCCCCTCACAG
19 EXON 19 55,006,068 55,006,315 2 - 248
CTTCTCCAAGCTGGTGTCGGCAACAGTCCGGAAGCTAGCCCCTCAGTGCACCGTCACCTT
TTTGCAGTCGGAGGATGGGTCTGGCAAAGGCGCAGCTTTGGTTACTGCTGTTGCTTGTCG
CCTTACCCAGATGGCCCACGTCTGAGGAAATCTCCAGGAACGAAGCAATCTCACTGGACT
GAGGCTTCAGCCTACCCTGATCCTCAGCCACCCACAACTCCCAAAGAAACCCGTGCGTGG
TCCCCTTA
3' upstream sequence
TAGCCGTCTGCCCACACCTAATGGCTTTGCAGGAGAAGCGACACTCCGGTTAGCAATATA
TATATATAATTTATTTACATTCACATCCGCTAAAATCCCTACGTGCCCCGGCAGCCGGGC
AAGGCTGTGTACATAAGGCCAAGTGTAAGTGCAGGAATGCACTTAAGACAGAGTCAGGAC
ACAAGCTTCACACAACAGGCCCCACACAGGGGCATTGGCCAGCCCCAGGAACGGGCACGC
CACGGCACACACACTTGCCATTGTACAGCCCGGGACTCCCATTGCATATTCACACGCCCC
GCTGGGCAGGGCACCTCGAGGCCGGGGTACAGGGAAAGGATCAGGGAGGAGCCGTCGGGT
GTCCCTGGGTGGGTGGGAGAAGGGCAGCATGTGAGAGGCAGATGTGTACCGACACCGACA
CCGGGTGTGAGAGACGTGAGCAGCCTCCGGGTGCACAGCATGAGATGTGTGTGTGGTGGG
GGGAGGGGTCCTGCATGACCTGGGAGAGGGGTGCGTGTGAGATGAGCACACGAGGCATGC
ATGAACACACGCCTGTGTGGTGATCGTGTGCCTGAATCCAAGGGCCAGCCCCTGTCCAGC
TGGGACCCTTAGTCCCCCCAGGCTTGAAGCCAGGCCCCTCAAATAGACCCCTACCCAGCA
GGCACAGAAATGTTTGCATAAGGCCCACCTCAGGCAGGAGCTCTGGGGGCCGTGTCCCAA
GCCCAGCATGTGTGCGCATGCTGTGTGTATGCGGGGCCCCTGGCAAGGGACAGGAAGAGA
GGTAGCATCACACACATACACACACACACACAGATGGGCTGGGCTCAGCCCAGGCTCCAG
GCACTGTCCACTCTGGGCCCCGGGACCAGGGCAGAGCGAGAACAGGTGGCTAAACCAACC
TGGCCAGGCAGGCCATGGAGGGATGGAGTTTGGGCAGGGTCTGAAGGACCAGCATCGAGG
GACAACTTCAGCCAGGAGGGGGGCCTGTCCAAGCAGCTCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Hk3 (ENSMUSG00000025877)
Transcript ID ENSMUST00000123097
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 878 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information