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Target CDS Information

Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Cross Reference
EMBL AC140443, AC160765
GO GO:0000288, GO:0003723, GO:0003730, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0003729, ...show all
MGI_trans_name Auh-008
OTTP OTTMUSP00000032443
OTTT OTTMUST00000065175
UCSC uc007qnd.1
UniParc UPI0001611553
Uniprot/SPTREMBL F6R307
Vega_transcript Auh-008, OTTMUST00000065175
Vega_translation 214472, OTTMUSP00000032443
Definition protein_id:ENSMUSP00000116179
translation:
RGELQASAGEAAEVCPGCHCVPEGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKV
RTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLAL
GGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD
GQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQVL

Chromosome 13
Length
Position(start - end)
88,588
52,840,869 - 52,929,458
Orient to Chromosome minus
Link Location : (13:52840869-52929458)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000123599
Reports
substitution
cSNPs5
Insertion46
Deletion84
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num0
synonymous substitutions 52840870 (p.???220???), 52840952 (p.His192His), 52841003 (p.Ser175Ser), 52889161 (p.Asp116Asp), 52889185 (p.Pro108Pro),
non-synonymous substitutions
B6 transcript
(ENSMUST00000123599)
RGELQASAGEAAEVCPGCHCVPEGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKV
RTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLAL
GGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD
GQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQVL
MSMv4 transcript
RGELQASAGEAAEVCPGCHCVPEGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKV
RTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLAL
GGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD
GQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQVL
homology100.00 (219 / 219)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000123599
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GAAGGACAGGGAATACTCTAAGGAGACATTCTATCTCTTCCTTTAGATTC
AGACTAGGAAGGCTCGCTCCTCAGGGGACTGGAAAATCTCCACTCCCAACCCCCCCCCCG
CCCCCCCCCCCAGTGGAGAAGGAAAAGCTTAAATTTCTCACAGATAGTGCTGGGTCAAAG
ATGAAAGGGACCACACATTAACCTGGGCCTGGCTATGCATGATTTTGGCTCTCTACTTCA
ACTTGTGTGAGGCTTCTGTCTAAAGATAAGTTCCTCCTCTGACTGGTCCTAAACTTCCCC
ATCTTCACCTGGGATTCAGGGAAGAGAGGAGGGAGTCCCCACTGTTTTTTTTTTTTTTTT
TTTCTTTTTGAGACAGGGTTTCTATGTCTCTGTCAGACCAGGCTTGCCTCTGCCTCCCAA
GTGCTGGGACTAAAGGTGTGTGCCACCACCGCCAGGTGGGAGTCCCCACTGTTAAAGACC
TTGTGGATTTCAACAATCTGATGATACACAGGGGAGGGGAACAAGGGTCTGTCTTTCGAG
TATCTTCCTTCCTTCCGGGATGGTCAGTCACAAGCCTACTATGGACCAAGTGCATGGAGG
CAAGACCCTCTTGTCCTCTTCATTTAAGCGTTTCCACACTTTAAAGATGCCTCTCCTTTT
CTGAGCTGGCAAAACATTAAAGCTACCCAGGCGACCTAGGCAAAGAGTGCCTGGGCGGGG
CCAGACAACGAGGGGCGGGGCCAAAGCGACCGACGCCTGTCGTGTGCGTGCGCGGCTCCA
AGCGGGGGGCGGAGTCTGGCCACGGGCGCCCGCTGTAAACATACAACATGGCGGCGGCGG
CTCCAGGCGCTCTGGGCGCCTTAAGAACGGGTGGCGTCCGCCTGGTGGCCGCGTGCTGCG
CGCGGCTCGGCCCCGCGGCCTGGGCTAGGGGTACCGCCCCGAGGAGGGGCTACAGCTCGG
AGGTGAAGACGGAGGATGAGTTGCGCGTGCGGCACCTGGAGGAGGAGAAC
1 EXON 1 52,929,389 52,929,458 - 1 70
CGAGGTGAGCTGCAGGCAAGCGCGGGCGAGGCCGCGGAGGTCTGCCCCGGCTGTCACTGC
GTCCCCGAGG
INTRON 1 - 2 52,919,267 52,929,388 10,122
GTACGGTGGCCTTCCGGGTTCAGCC..........GTCCTTCTTCTCCCTCCCTAACCAG
2 EXON 2 52,919,199 52,919,266 1 0 68
GCATTGTGGTGCTCGGGATTAACAGAGCTTATGGGAAAAATGCACTCAGTAAAAATCTCC
TCAAGATG
INTRON 2 - 3 52,919,089 52,919,198 110
GTGAGTGGAAGACTACGCTGTTTGC..........CCCCCTCCCCCCTATCTTGGTTTAG
3 EXON 3 52,919,001 52,919,088 0 1 88
TTATCAAAAGCGGTGGATGCATTAAAGTCAGATAAGAAAGTTCGGACCATTATCATCAGA
AGTGAAGTCCCTGGGATATTCTGTGCTG
INTRON 3 - 4 52,898,737 52,919,000 20,264
GTAGGTAAAATAATCTCCTGTTGTC..........CTCATCTGAATACGATGTCTTGTAG
4 EXON 4 52,898,650 52,898,736 1 1 87
GTGCTGACCTTAAGGAACGAGCCAAGATGCATTCCAGTGAAGTTGGTCCCTTTGTCTCCA
AGATCCGATCGGTGATCAATGACATTG
INTRON 4 - 5 52,889,196 52,898,649 9,454
GTAAGCACAGCTATGCTGAGGGTGG..........AGGAGATAAACTTTGTCTGTTTCAG
5 EXON 5 52,889,103 52,889,195 1 1 93
CAAACCTCCCCGTGCCCACCATCGCAGCCATAGATGGCCTTGCCCTCGGAGGGGGTCTGG
AGCTGGCTCTAGCGTGTGACATTCGAGTAGCAG
INTRON 5 - 6 52,887,298 52,889,102 1,805
GTGAGAATTTAATCCTGTTAACATA..........CTTAATTCTCTTTATTTCTTTTTAG
6 EXON 6 52,887,241 52,887,297 1 1 57
CTTCCTCTGCAAAAATGGGCCTGGTTGAAACAAAGTTGGCAATTATTCCTGGCGGAG
INTRON 6 - 7 52,841,065 52,887,240 46,176
GTATGAATTGCTCACTCTTCGTCTC..........CTGTCTTTCTCCTCTCCCCCTTCAG
7 EXON 7 52,840,869 52,841,064 1 - 196
GAGGGACACAGAGATTACCACGTGCCATCGGGATGTCCCTGGCTAAGGAACTCATCTTCT
CCGCCCGAGTTCTTGACGGTCAAGAAGCCAAAGCTGTGGGCTTGATCAGCCACGTGTTAG
AACAGAACCAGGAAGGGGATGCAGCCTACAGGAAGGCGCTGGACCTGGCGAGAGAGTTTC
TACCTCAGGTACTGTG
3' upstream sequence
AGAGCACCTGTGTGTGTCACTCGAGATCAAGCATAGCACCCACCTCATGCACTGAGGTGG
CCCTGTCCCGCCTCTCAAGTAAAACGGTTAAAATTAAGATTTGAAAGTAATCTGAGGGTT
GCGTTGTATTACCAACAGACACATCACTTGTGCTACACACACACACACACACACACACAC
ACACACACACACACACACACAGAGTGTAACTTCCTAGTAAATTGTCTTTGCTTGTATACC
AACTCAGTACTCTAACCTAAGACATCTCTATGGAGAGAGAGCAATTGGGGGGGTGGGAGG
GGAGCACTGTCTCACATCCAGGCATGTGGAACGACACTGCATCCTAGCAAGTTGGGAGAC
TGTGTGCACACGCCCGTGGAGGCCAAGGTTTGCCATTGGTGTCTTCCTCCATTTTCCTCC
CCCTCATATATCAGAGAGGGATCTCTTCCTTGGGCCCTGAGCTTTATAGTTCAACTTAAC
CTGTCCACTCAGCGCAGTCTGCTTGCTTTTGCCTCCCTAAGTGCTGCCACGCTAACCTGC
TATTCATGTGTGTTGGAGATGTGAGCTCCCAGTAAGCCTGTTACCCACTAAGCCTTCTCC
AGAGCCTCACAATGTTGTATTTTAATATAAAAGGCCATTCACTTCTAAATACAGCAAGTG
GATGCTCAACTCCTGTAGACCGATGTAAATCAAGATCAAAGGACTCCGCTCTGGCTGGAG
AGGATGGCTGCCTCTAGGGCAGCTGAGCTTCCACAGTACTGAAGGTTGCTGCTGCTCTTC
TCAGAGAGGGTGTCTGGTTCTCCCTTCCATAACCCAGACGTACCTGAGGGCATACGTCCG
TGTGTCCTGCTGTCACTGCAGTCAGCTGTCCATGCTGACACAGGAGAGGTCCCAAATAAA
GAAGTGTGGCTTGGAGCCCCCTTGACAGCTCCAGCTCCTCTCCAGCCTGACCTTCTGGCA
TTGCCGCTGGTTAGTGCGGTGGTGAGCCAGGCCGACCTCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000123599
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 219 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information