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Target CDS Information

Gene Symbol (Gene ID) Pi4kb (ENSMUSG00000038861)
Cross Reference
EMBL AC087062
GO GO:0004430, GO:0005737, GO:0006661, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Pi4kb-005
OTTP OTTMUSP00000044334
OTTT OTTMUST00000082653
UCSC uc008qhm.3
UniParc UPI0001889B0A
Uniprot/SPTREMBL E9Q8A3
Vega_transcript OTTMUST00000082653, Pi4kb-005
Vega_translation 188020, OTTMUSP00000044334
Definition protein_id:ENSMUSP00000121965
translation:
MKFLEARSLAVAMGDMVVEPATLKPTSEPTPSPSGNNGGSLLSVITEGVGELSVIDPEVA
QKACQEVLEKVKLLHGGVAISSKGTPLELVNGDGVDNEIRCLDDPPAQIREEEDEMGAGV
ASGTAKGARRRRQNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFYFR
NEDVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQ
RHSRGTKLRKLILSDELKPAHRKRELPTLSPAPDTGLSPSKRTHQRSKSDATASISLSSN
LKRTASNPKVENEDEELSSSTESIDNSFSSPVRLAPEREFIKSLMAIGKRLATLPTKEQK
TQRLISELSLLNHKLPARVWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECEN
FDTTSVPARIPENRIRSTRSVENLPECGITHEQRAGSFSTVPNYDNDDEAWSVDDIGELQ
VELPEVHTNSCDNISQFSVDSITSQESKEPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDP
SAVALKEPWQEKVRRIREGSPYGHLPNWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQ
ERVPLWIKPYKILVISADSGMIEPVVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEAFLS
AQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDAEGHIIHIDFGFILSSSPRNLGFETSAF
KLTTEFVDVMGGLNGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSST
IRNLKERFHMSMTEEQLQLLVEQMVDGSMRSITTKLYDGFQYLTNGIM

Chromosome 3
Length
Position(start - end)
29,750
94,976,189 - 95,005,940
Orient to Chromosome plus
Link Location : (3:94976189-95005940)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pi4kb (ENSMUSG00000038861)
Transcript ID ENSMUST00000125476
Reports
substitution
cSNPs4
Insertion9
Deletion14
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num1
synonymous substitutions 94984130 (p.Leu52Leu), 94984365 (p.Arg131Arg), 95005844 (p.Leu797Leu),
non-synonymous substitutions 94995844 (p.Val486Met),
B6 transcript
(ENSMUST00000125476)
MKFLEARSLAVAMGDMVVEPATLKPTSEPTPSPSGNNGGSLLSVITEGVGELSVIDPEVA
QKACQEVLEKVKLLHGGVAISSKGTPLELVNGDGVDNEIRCLDDPPAQIREEEDEMGAGV
ASGTAKGARRRRQNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFYFR
NEDVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQ
RHSRGTKLRKLILSDELKPAHRKRELPTLSPAPDTGLSPSKRTHQRSKSDATASISLSSN
LKRTASNPKVENEDEELSSSTESIDNSFSSPVRLAPEREFIKSLMAIGKRLATLPTKEQK
TQRLISELSLLNHKLPARVWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECEN
FDTTSVPARIPENRIRSTRSVENLPECGITHEQRAGSFSTVPNYDNDDEAWSVDDIGELQ
VELPEVHTNSCDNISQFSVDSITSQESKEPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDP
SAVALKEPWQEKVRRIREGSPYGHLPNWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQ
ERVPLWIKPYKILVISADSGMIEPVVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEAFLS
AQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDAEGHIIHIDFGFILSSSPRNLGFETSAF
KLTTEFVDVMGGLNGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSST
IRNLKERFHMSMTEEQLQLLVEQMVDGSMRSITTKLYDGFQYLTNGIM*
MSMv4 transcript
MKFLEARSLAVAMGDMVVEPATLKPTSEPTPSPSGNNGGSLLSVITEGVGELSVIDPEVA
QKACQEVLEKVKLLHGGVAISSKGTPLELVNGDGVDNEIRCLDDPPAQIREEEDEMGAGV
ASGTAKGARRRRQNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFYFR
NEDVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQ
RHSRGTKLRKLILSDELKPAHRKRELPTLSPAPDTGLSPSKRTHQRSKSDATASISLSSN
LKRTASNPKVENEDEELSSSTESIDNSFSSPVRLAPEREFIKSLMAIGKRLATLPTKEQK
TQRLISELSLLNHKLPARVWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECEN
FDTTSVPARIPENRIRSTRSVENLPECGITHEQRAGSFSTVPNYDNDDEAWSVDDIGELQ
VELPEMHTNSCDNISQFSVDSITSQESKEPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDP
SAVALKEPWQEKVRRIREGSPYGHLPNWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQ
ERVPLWIKPYKILVISADSGMIEPVVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEAFLS
AQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDAEGHIIHIDFGFILSSSPRNLGFETSAF
KLTTEFVDVMGGLNGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSST
IRNLKERFHMSMTEEQLQLLVEQMVDGSMRSITTKLYDGFQYLTNGIM*
homology99.88 (829 / 829)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pi4kb (ENSMUSG00000038861)
Transcript ID ENSMUST00000125476
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCCTGTGTGTGTGTGTGGGGGGGTCCTTCTGCCACCCTGTCCCGCCCAGC
CTACCGCGACCTGGGTTCGACTACAAAACTGCCCCCCTGGTGGCAGCTGCACCCCGAGGT
CCTTCACCCTTTCCTCTCGGGCCCGGGGTAGTCTTCTCTGCTTTCTGGCTTCCTCTTCAG
TTTAGCCCCTCCCTCTGCCCCGTGGATTCCACCTCCCCACCAGCAGGACACACACTTCGT
ACCTCTGTTGCCTCTGTTCCGTAACTATCTTCCTAAGTCGTGAACCTTTTCCACATTTGA
CCCCTTCTACAATATCATCCATGTTTGCCTTCCTCGCCGTTTGTGTTTCTGCTCACAAGC
CTCTTCCATGGACTCCGCCTTTATCCCTTTTCCTATTTTGCCCCACTCTTCCGAGTCTGT
GCAATCTCAGCACAGAGTTCTCATTTCCCTCAGCTACAGATTGTATCCCTCTCTTCTGCT
TCCAATTCCATGACCTCACCATGACCCACTCCCCCAGCTCCTGACTTCCAAGAATTGCCT
ATTCCCTTCTCCTTAAAGGATCTCAGACTACTGTCATCATACCCAGATACCATCCACTTT
GACCTTAGTCCTCAACCCCTCTCTAGGGTGCCTGATGATACCTGAAGCTGTCTTTGGCTT
CTCTTTCCCCTTTCTCAATCTCCAGCCCTCTGGAGGGCTTCCCGTAGGAGAAAGCTCTGC
CGTGAACACCCCTACAGATAGTGATTTCCAACTTTTGACATTCTCTCCAGGGATTTCCAA
CTTTTGACATTCTCTCCAGGATTCGGCTGATGTTTGTCTCCCTCGGCTCTGTTTTCCCTG
TGGTCTTTAAGTGTTCTCTATCATGCCTTTTATCTCCACATATGATTTCAGATCAGCTAA
AGCTTGAACTAAGAAGATGTGAGAGGATGGGGAGCCACAGTTGTCTCAAGCTTTTCTGGA
CAGATGTGTGTTTCTGAAGGATGAAGCAACTTTTAAAGAAGTCTATCAAT
1 EXON 1 94,976,117 94,976,196 - 2 80
CAGATTACATTTTGTTGAGTGTTTAAGAGCAACCACTAGGAAAGATGCTCAGAAACTGAG
CATGGAAACTGAATGAAGTT
INTRON 1 - 2 94,976,197 94,983,982 7,786
GTGAGAAATTTTGCTTTAGATTACT..........GTTCTTTTTTCCCTTCCTCCTCTAG
2 EXON 2 94,983,983 94,984,919 2 0 937
CTTGGAAGCTCGAAGTCTGGCTGTAGCCATGGGAGACATGGTAGTGGAGCCTGCCACCCT
GAAGCCAACTTCTGAGCCTACTCCTAGCCCATCAGGGAATAATGGGGGCTCCCTACTAAG
CGTCATCACGGAGGGGGTCGGGGAACTCTCAGTGATTGACCCTGAGGTGGCCCAGAAGGC
CTGCCAGGAGGTACTGGAGAAAGTCAAGCTTTTGCATGGAGGTGTAGCCATCTCTAGCAA
AGGCACCCCGCTGGAGTTGGTTAATGGGGATGGTGTGGACAATGAAATCCGTTGCCTAGA
TGATCCACCTGCCCAGATCAGGGAGGAAGAAGATGAGATGGGGGCTGGTGTGGCCTCTGG
CACAGCCAAAGGAGCAAGACGAAGACGACAGAACAACTCAGCCAAACAGTCTTGGCTCCT
GAGGCTGTTTGAGTCAAAACTATTTGACATCTCTATGGCTATTTCATACTTGTATAACTC
CAAGGAGCCTGGAGTGCAAGCCTACATTGGCAACCGGCTCTTCTACTTTCGCAATGAGGA
TGTGGACTTCTATTTGCCCCAGTTGCTTAACATGTATATCCACATGGATGAGGATGTGGG
CGATGCCATTAAGCCCTACATAGTCCACCGCTGTCGCCAGAGCATCAACTTTTCCCTCCA
GTGTGCCCTGTTGCTTGGGGCCTACTCTTCAGACATGCACATTTCCACTCAGCGACACTC
GCGAGGGACCAAGTTACGGAAGCTAATCCTCTCAGATGAGCTGAAGCCAGCTCACCGAAA
GAGGGAGCTGCCGACATTAAGCCCAGCCCCTGACACAGGGCTGTCTCCCTCTAAAAGGAC
TCACCAGCGTTCTAAGTCAGATGCTACGGCCAGCATAAGTCTCAGCAGCAACCTGAAACG
AACAGCCAGCAACCCTAAAGTGGAGAATGAGGATGAG
INTRON 2 - 3 94,984,920 94,989,302 4,383
GTAAAGCTGGGGGAGGGACAGATGG..........CCCTTGCCCTCTGGCCCTTTCCCAG
3 EXON 3 94,989,303 94,989,347 0 0 45
GAGCTCTCCTCCAGCACCGAGAGTATTGATAATTCATTCAGTTCC
INTRON 3 - 4 94,989,348 94,992,965 3,618
GTAAGTGGGGCCAGGCTGGGACTGG..........TTGGTTTAATCTTAACCCTCTGTAG
4 EXON 4 94,992,966 94,993,193 0 0 228
CCTGTCCGGCTGGCCCCTGAGCGAGAATTCATCAAGTCTTTGATGGCAATCGGCAAACGG
CTGGCCACGCTCCCCACTAAAGAGCAAAAAACACAAAGGCTGATCTCAGAGCTTTCCCTG
CTCAACCATAAGCTCCCTGCCCGAGTCTGGCTGCCCACGGCTGGCTTTGACCACCACGTG
GTCCGTGTGCCCCACACACAAGCTGTTGTTCTCAATTCCAAGGATAAG
INTRON 4 - 5 94,993,194 94,994,160 967
GTAAGTGGCTCTCACCCAGACCCTT..........GCAAATGCTCTCTCTTCTCACCCAG
5 EXON 5 94,994,161 94,994,388 0 0 228
GCTCCCTACCTGATCTACGTGGAAGTTCTCGAATGTGAAAACTTTGACACAACTAGTGTT
CCTGCCCGGATTCCTGAAAACCGAATTCGGAGTACACGGTCTGTAGAGAACCTGCCTGAA
TGTGGTATCACTCATGAGCAGCGAGCTGGCAGCTTCAGCACTGTGCCCAATTATGACAAT
GATGATGAAGCCTGGTCAGTGGATGATATAGGCGAGCTGCAAGTGGAG
INTRON 5 - 6 94,994,389 94,995,834 1,446
GTGAGGGATCTCCAAGGAGATAATC..........AGCATTTCTGACCTGCTCTTCCCAG
6 EXON 6 94,995,835 94,995,944 0 2 110
CTCCCTGAAATGCACACCAACAGCTGTGACAACATCTCCCAGTTCTCGGTGGACAGCATC
ACCAGCCAGGAGAGCAAGGAGCCTGTGTTCATTGCAGCAGGGGACATCCG
INTRON 6 - 7 94,995,945 94,996,579 635
GTATGGCCCAATCACCTCGTCCTTC..........AAATTGTGTATTTTCTTCCTGCTAG
7 EXON 7 94,996,580 94,996,684 2 2 105
ACGGCGCCTTTCAGAACAGCTGGCTCATACTCCTACAGCCTTCAAACGAGACCCTGAAGA
CCCTTCTGCAGTTGCCCTCAAAGAGCCCTGGCAGGAGAAAGTGCG
INTRON 7 - 8 94,996,685 94,996,851 167
GTGAGGAGGGTAGAGGGTAGACAGT..........CATCCTGTGACTTTTTTCTTCACAG
8 EXON 8 94,996,852 94,996,975 2 0 124
GAGGATCAGAGAAGGTTCCCCGTATGGCCATCTTCCCAATTGGCGACTCCTTTCAGTCAT
TGTCAAGTGTGGAGATGACCTTCGCCAGGAGCTGCTGGCTTTCCAGGTGTTGAAACAACT
GCAG
INTRON 8 - 9 94,996,976 94,998,847 1,872
GTAAAGAAATGGAAGCACAGAGCAG..........TCAATACCTTTGTGTCTCTTCACAG
9 EXON 9 94,998,848 94,999,113 0 2 266
TCCATTTGGGAACAGGAGCGAGTGCCTCTTTGGATCAAGCCATATAAGATTCTTGTGATT
TCAGCTGACAGTGGCATGATTGAACCAGTAGTCAACGCTGTGTCCATCCACCAGGTGAAG
AAACAGTCACAGCTCTCCTTGCTCGATTACTTCCTACAGGAACATGGCAGTTATACCACT
GAGGCATTCCTCAGTGCCCAGCGCAATTTTGTGCAAAGCTGTGCTGGCTACTGCTTGGTC
TGCTACCTATTGCAAGTCAAGGACAG
INTRON 9 - 10 94,999,114 95,004,239 5,126
GTAAGTGACTTGTGCCCTTCATCCT..........ACACTTACTGTTGCCTCTTCCTCAG
10 EXON 10 95,004,240 95,004,372 2 0 133
GCACAACGGGAACATCCTTCTGGACGCAGAAGGTCACATCATCCACATCGACTTTGGCTT
CATCCTTTCCAGCTCACCCCGAAACCTGGGCTTCGAGACATCAGCCTTTAAGCTGACCAC
AGAATTTGTGGAT
INTRON 10 - 11 95,004,373 95,004,633 261
GTGAGTCAAAAAAGAGAGGTGCTTC..........ACACAGACACTCTCCTTGCTTCCAG
11 EXON 11 95,004,634 95,004,754 0 1 121
GTAATGGGTGGCCTGAACGGTGATATGTTCAACTACTACAAGATGCTCATGCTGCAAGGG
CTGATTGCTGCTCGGAAGCACATGGACAAGGTGGTACAGATTGTGGAGATCATGCAGCAA
G
INTRON 11 - 12 95,004,755 95,005,758 1,004
GTGTGGCTCAGGAGGGCCCCGGCCT..........CTTAATTTCCACTGCTTCCCCCCAG
12 EXON 12 95,005,759 95,006,781 1 - 1,023
GTTCTCAGCTTCCTTGCTTCCATGGCTCCAGCACCATTCGCAACCTCAAAGAGAGGTTCC
ACATGAGCATGACTGAGGAGCAGCTACAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCA
TGAGGTCCATCACCACCAAACTCTACGATGGCTTCCAGTACCTCACCAATGGCATCATGT
GACACCATTTTCAGGCCTAGAAGTGGTGGGACTGAAGGCATCCTCCTTAGAAGGACCCTT
GCCTAAGAAAACCCAAATCACAAAACCCCACCTACCTAACCACCTACCCAAGGGAAATGG
AAGGCAAGAAATACAAAGGATCATGTGGTAACCATGAGAGCTTGCCAGAGGGTAGGAGAG
CCAACCTTGGGGTCCAGACTTGCTGGGGCTTCCCCACCTCTTGCTGTGTCAGTATTACCA
CCTGACAGATCCCAGGACTCACTGCCCTCCAGAGAACAGAGGTGATGAACATGAGGAGGA
CTGGAGTCTTCTTCCCCTCAGGGGTCTCAGAGGTTTTCTACAAACCATCTTTTATTTTCC
CTGGGTCCCAGTAAACTGGGAGGAGTAGGTTCTTGGTACTTAGGACTTAATCCTATGTTT
GGCCATGCTGCTGCCTAATTCAGTCCCCTCCTGGGGGCTGACCCCTGGCCCACATTCCCG
ACAAGTGGGTCCTGCACTTGCTGAGGTCCCCATCATGGGGGTAAGGAAGGGAGAACTGAC
AAAACCCTCTGATGTATTGAGGGTACTGGCTTAGCCATGGGGAAATTTCTTACCCTGATC
CTTTCCTCACATCCAGGGAAACAGCTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTGT
TTGAAATAAAATCCTTAGTTAGCCATCTGTCTTGTTGCTTCTGGGGGAGGAGTGCTTGGA
AAGGGTTAAGTCCAGCATACAAAAGGCACCAAACACACAAGATGAAGGAAGATTGCTTTT
TCCATCTGTCTTCGTCAATACTGCCTCTTCCCTGAGAAGGGCTTCCCCAGTTCTGACTCG
CCC
3' upstream sequence
CTCCCTATGAGTACACATTATCCAACTCACATAAAAAGAAAAGCCTGAATGGGGATTAAA
CCACAAGCAGTTTTAATGGTCTGGTTTTCTCCCTCCTGTTTCTCCCACTGTTAGTATTAC
TACTACTACAAGAATAAAGGATTCCTGAGAGCCTGTCCTCTCCTCTCCCTGGAACCTACT
TGACAGGACTCATCCCCACCAACCCCCCACCCCTAAATTTCTGGGGGAAAAGACAAATGG
AAGGCACTGCAGGGATTGGGGTGGGGGTGTTAGTGCCAATGAGTGTTGGAGGAGGGGATA
CTAGGACAGAACCCAGCCCAGAAGAAGAAATACTGGTCTGTGCCTGAAGAACTCTAGTAG
AGGGGTAGAAGCTAGACCCTGTACATCCTTCAGTCCATCCCTATGCCTGTCTAGCAGGCT
TGCCAAGGTCCCCTCCCCCCTCCCCCCACAGTTACTGGGAGTCTGCAGCAGGAGCATTAG
TGTTGGATTCAGAAAGGAAAAAGAAGGCCCACTTAAGTAGAACCTAGGGGCCAAACCCTA
GAGGGAAGGGGGTGCAAGTCACTAGAATCCTCAAAAGCCTGTCCCTCAGGGATAGAGAAA
GAAGTAAATGTTAAACTCCCAGCCCAGGGAGGTGACAGCAGCAGTGAAACCCAAGTCCCA
GGGAAGAGGCCTGGTCAGTCTGAGGCTGGGGACCTAGTTGTCCCCACTGCCTCCCTGCCG
GGCCCTGATGAATGCCATGCCATGCGTGCGGAAATGGGTCTTGAGGTTTAGAGGGCTGTC
ACAGCTCTTGCCACAGACCTTACAAGTCAGAGGGTCTCCAGGAGCAGGCAAAGGTGAGTC
TCCACCCTCTGGGTCAGAGCGTAAAGGAGGAGCTGCTTCTTCCCCATCCCCCAGCCCCAG
GACACTGGCCTTACCCCCGGCCCGTCTCTTCTTGTGGCTAATGAACCGGTGGCGGCTCAG
GGAACCAGGGGAAGCAAAGCACAAGCCACAGTCAAGGCAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Pi4kb (ENSMUSG00000038861)
Transcript ID ENSMUST00000125476
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 829 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information