MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

4833439L19Rik (ENSMUSG00000025871)

Cross Reference

Clone_based_vega_transcript	RP23-452K4.2-005
EMBL	AC155262
GO	GO:0003674, GO:0008150
goslim_goa	GO:0003674, GO:0008150
MGI_trans_name	4833439L19Rik-005
OTTP	OTTMUSP00000043422
OTTT	OTTMUST00000081240
UniParc	UPI0001889CE5
Uniprot/SPTREMBL	D3Z1U8
Vega_transcript	OTTMUST00000081240, RP23-452K4.2-005

Vega_translation

214488, OTTMUSP00000043422

Definition

protein_id:ENSMUSP00000121916
translation:

MSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKY

Chromosome

Length
Position(start - end)

133
54,561,708 - 54,561,842

Orient to Chromosome

minus

Link

Location : (13:54561708-54561842)
/

Detail Map

name	4833439L19Rik (ENSMUSG00000025871)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : 4833439L19Rik note : RIKEN cDNA 4833439L19 gene [Source:MGI Symbol;Acc:MGI:1921162]

name	4833439L19Rik (ENSMUSG00000025871)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000026989

name	4833439L19Rik (ENSMUSG00000025871)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000153065

name	4833439L19Rik (ENSMUSG00000025871)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000143144

name	4833439L19Rik (ENSMUSG00000025871)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000132136

name	4833439L19Rik (ENSMUSG00000025871)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000126295

name	4833439L19Rik (ENSMUSG00000025871) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26529.1 Uniprot/SWISSPROT:Q9DBN4 RefSeq_peptide:NP_598558 RefSeq_mRNA:NM_133797.4 RefSeq_mRNA_predicted:XM_006517478 RefSeq_peptide_predicted:XP_006517541.1 Vega_transcript:OTTMUST00000081236 Vega_transcript:RP23-452K4.2-001 UCSC:uc007qof.3 Fantom:1300002B20 Fantom:4732438K03 Fantom:4833439L19 Fantom:4930558H15 Fantom:G830027I08 Fantom:I420039I05 Fantom:I530025E03 Fantom:I920194N11 Clone_based_vega_transcript:RP23-452K4.2-001 EMBL:AK004845 EMBL:AK014792 EMBL:AK016176 EMBL:AK028697 EMBL:AK145025 EMBL:AK159945 EMBL:AK167616 EMBL:AK169399 EMBL:AK173126 EMBL:BC033445 EMBL:BC039775 EMBL:BC043040 EMBL:BC054417 GO:GO:0003674 GO:GO:0005737 GO:GO:0008150 GO:GO:0016491 GO:GO:0055114 MGI_trans_name:4833439L19Rik-001 Vega_translation:214484 Vega_translation:OTTMUSP00000043419 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0008150 goslim_goa:GO:0016491 protein_id:AAH33445.1 protein_id:AAH39775.1 protein_id:AAH43040.1 protein_id:AAH54417.1 protein_id:BAB23611.1 protein_id:BAB30137.1 protein_id:BAC25449.1 protein_id:BAC26072.1 protein_id:BAD32404.1 protein_id:BAE26191.1 protein_id:BAE35501.1 protein_id:BAE39669.1 protein_id:BAE41145.1 OTTP:OTTMUSP00000043419 OTTT:OTTMUST00000081236 UniParc:UPI000000B2D7
definition	note : transcript_id=ENSMUST00000026989 protein_id : ENSMUSP00000026989 translation : MASRQPEVPALAPSGPLGKMSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKYQHLDKTEEGAASVSSLAVTPSPATDSSDKAPVVKAKATHVIMSSLITKQTQESIQRFEQQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGETAKEEKHPASAQSTPSSTPHASPKQKSRGWFPSGSSTALPAPNPHTMDPGSGNDRNSADKWSLFGPRPLQKSDSGFAIQAYKGAPRPSPMEVMRAQATRVGEDPATFKPPKMDVPMVEGKKQPLRTHNLKPRDLNVLTPTGF

name	4833439L19Rik (ENSMUSG00000025871) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS56882.1 RefSeq_peptide:NP_001239574 RefSeq_peptide:NP_001239575 RefSeq_mRNA:NM_001252645.1 RefSeq_mRNA:NM_001252646.1 Vega_transcript:OTTMUST00000081237 Vega_transcript:RP23-452K4.2-002 Uniprot/SPTREMBL:D3Z1F7 UCSC:uc029sbj.1 Clone_based_vega_transcript:RP23-452K4.2-002 EMBL:AC155262 EMBL:CH466546 GO:GO:0003674 GO:GO:0008150 MGI_trans_name:4833439L19Rik-002 Vega_translation:214485 Vega_translation:OTTMUSP00000043420 goslim_goa:GO:0003674 goslim_goa:GO:0008150 protein_id:EDL41141.1 OTTP:OTTMUSP00000043420 OTTT:OTTMUST00000081237 UniParc:UPI00001E82A1
definition	note : transcript_id=ENSMUST00000153065 protein_id : ENSMUSP00000119874 translation : MSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKYQHLDKTEEGAASVSSLAVTPSPATDSSDKAPVVKAKATHVIMSSLITKQTQESIQRFEQQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGETAKEEKHPASAQSTPSSTPHASPKQKSRGWFPSGSSTALPAPNPHTMDPGSGNDRNSADKWSLFGPRPLQKSDSGFAIQAYKGAPRPSPMEVMRAQATRVGEDPATFKPPKMDVPMVEGKKQPLRTHNLKPRDLNVLTPTGF

name	4833439L19Rik (ENSMUSG00000025871) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081239 Vega_transcript:RP23-452K4.2-004 Uniprot/SPTREMBL:D3YXF2 UCSC:uc007qof.3 Clone_based_vega_transcript:RP23-452K4.2-004 EMBL:AC155262 GO:GO:0003674 GO:GO:0008150 MGI_trans_name:4833439L19Rik-004 Vega_translation:214486 Vega_translation:OTTMUSP00000043421 goslim_goa:GO:0003674 goslim_goa:GO:0008150 OTTP:OTTMUSP00000043421 OTTT:OTTMUST00000081239 UniParc:UPI0001889CE4
definition	note : transcript_id=ENSMUST00000143144 protein_id : ENSMUSP00000120615 translation : MASRQPEVPALAPSGPLGKMSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKYQHLDKTEEGAASVSSLAVTPSPATDSSDKAPVVKAKATHVIMSSLITKQTQESIQRFEQQAGLRDAGYT

name	4833439L19Rik (ENSMUSG00000025871) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081319 Vega_transcript:RP23-452K4.2-009 Uniprot/SPTREMBL:D3YTM8 Clone_based_vega_transcript:RP23-452K4.2-009 EMBL:AC155262 GO:GO:0003674 GO:GO:0008150 MGI_trans_name:4833439L19Rik-009 Vega_translation:214487 Vega_translation:OTTMUSP00000043481 goslim_goa:GO:0003674 goslim_goa:GO:0008150 OTTP:OTTMUSP00000043481 OTTT:OTTMUST00000081319 UniParc:UPI0001889CE6
definition	note : transcript_id=ENSMUST00000132136 protein_id : ENSMUSP00000121083 translation : MASRQPEVPALAPSGPLGKMSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKYQHLDK

name	4833439L19Rik (ENSMUSG00000025871) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081240 Vega_transcript:RP23-452K4.2-005 Uniprot/SPTREMBL:D3Z1U8 Clone_based_vega_transcript:RP23-452K4.2-005 EMBL:AC155262 GO:GO:0003674 GO:GO:0008150 MGI_trans_name:4833439L19Rik-005 Vega_translation:214488 Vega_translation:OTTMUSP00000043422 goslim_goa:GO:0003674 goslim_goa:GO:0008150 OTTP:OTTMUSP00000043422 OTTT:OTTMUST00000081240 UniParc:UPI0001889CE5
definition	note : transcript_id=ENSMUST00000126295 protein_id : ENSMUSP00000121916 translation : MSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKY

name
type	misc_feature
link
xref
definition	note : contig AC155262.2 75073..168429(1)

name	4833439L19Rik (ENSMUSG00000025871)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081238 Vega_transcript:OTTMUST00000081238 UCSC:uc007qoi.3 Clone_based_vega_transcript:RP23-452K4.2-003 MGI_trans_name:4833439L19Rik-003 OTTT:OTTMUST00000081238
definition	note : processed_transcript note : transcript_id=ENSMUST00000153708

name	4833439L19Rik (ENSMUSG00000025871)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081318 Vega_transcript:OTTMUST00000081318 Clone_based_vega_transcript:RP23-452K4.2-008 MGI_trans_name:4833439L19Rik-008 OTTT:OTTMUST00000081318
definition	note : retained_intron note : transcript_id=ENSMUST00000143173

name	4833439L19Rik (ENSMUSG00000025871)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081317 Vega_transcript:OTTMUST00000081317 Clone_based_vega_transcript:RP23-452K4.2-007 MGI_trans_name:4833439L19Rik-007 OTTT:OTTMUST00000081317
definition	note : retained_intron note : transcript_id=ENSMUST00000150938

name	4833439L19Rik (ENSMUSG00000025871)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081316 Vega_transcript:OTTMUST00000081316 Clone_based_vega_transcript:RP23-452K4.2-006 MGI_trans_name:4833439L19Rik-006 OTTT:OTTMUST00000081316
definition	note : retained_intron note : transcript_id=ENSMUST00000147318

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	4833439L19Rik (ENSMUSG00000025871)
Transcript ID	ENSMUST00000126295

Reports
substitution
cSNPs	0
Insertion	7
Deletion	13
SNPs	+1kb 54565433(c.-3591A>T), 54565451(c.-3609C>G), 54565939(c.-4097A>T), 54565964(c.-4122C>G), 54566618(c.-4776C>T), 54567055(c.-5213A>T), 54568557(c.-6715G>A), 54568756(c.-6914T>G), 54568796(c.-6954G>C), 54568807(c.-6965T>C), 54568960(c.-7118C>T), 54569120(c.-7278T>C), 54569213(c.-7371G>T), 54569457(c.-7615G>A), 54569537(c.-7695G>T), 54569612(c.-7770T>C), 54569867(c.-8025C>T), 54569881(c.-8039T>G), 54569885(c.-8043T>G), 54569888(c.-8046T>C), 54569984(c.-8142G>A), 54570235(c.-8393A>G), 5'UTR CDS 3'UTR INTRON 54561885(c.-29-14A>G), 54562010(c.-29-139A>G), 54562087(c.-29-216T>C), 54562244(c.-29-373C>G), 54562309(c.-29-438T>C), 54562484(c.-29-613G>A), 54562499(c.-29-628T>A), 54562571(c.-29-700A>G), 54562694(c.-29-823G>T), 54562696(c.-29-825G>A), 54562711(c.-29-840C>T), 54562720(c.-29-849A>G), 54563010(c.-29-1139C>T), 54563294(c.-30+1216T>C), 54563509(c.-30+1001T>C), 54563600(c.-30+910T>C), 54563766(c.-30+744T>C), 54564085(c.-30+425G>C), 54564343(c.-30+167G>A), 54564870(c.-141-249T>C), 54565060(c.-142+122G>A), 54565103(c.-142+79T>C), -1kb 54556789(c.4919G>A), 54556817(c.4891G>A), 54557109(c.4599A>G), 54557165(c.4543C>T), 54557348(c.4360C>T), 54557392(c.4316G>A), 54557474(c.4234A>G), 54557485(c.4223T>C), 54557487(c.4221A>G), 54557494(c.4214C>T), 54557670(c.4038T>C), 54557733(c.3975T>C), 54557916(c.3792T>C), 54558080(c.3628G>A), 54558427(c.3281C>T), 54558483(c.3225T>C), 54558531(c.3177T>C), 54558535(c.3173A>G), 54558619(c.3089A>G), 54559053(c.2655A>G), 54559080(c.2628A>T), 54559404(c.2304C>T), 54559596(c.2112C>T), 54559806(c.1902A>G), 54559833(c.1875C>T), 54560111(c.1597G>T), 54560302(c.1406C>A), 54560316(c.1392C>T), 54560348(c.1360C>T), 54560568(c.1140T>C), 54560637(c.1071A>T), 54560710(c.998A>G), 54560722(c.986G>A), 54560728(c.980A>G), 54560765(c.943T>C), 54560823(c.885C>G), 54560904(c.804C>T), 54560915(c.793G>A), 54561070(c.638T>C), 54561093(c.615G>A), 54561097(c.611C>G), 54561160(c.548T>A), 54561268(c.440A>G), 54561499(c.209A>G), 54561627(c.*81C>G),
Insertions	+1kb 54565904 (c.-4063_-4062insGG), 54568372 (c.-6531_-6530insAG), 5'UTR CDS 3'UTR INTRON 54564507 (c.-30+2_-30+3insCT), -1kb 54558658 (c.3049_3050insTTCTTC), 54558688 (c.3019_3020insG), 54558694 (c.3013dupG), 54560034 (c.1673_*1674insTTTTT),
Deletions	+1kb 54566981 (c.-5141_-5140delTT), 5'UTR CDS 3'UTR INTRON 54561917 (c.-29-48_-29-47delAA), 54562466 (c.-29-599_-29-596delTAGC), 54563445 (c.-30+1063_-30+1064delCC), 54563568 (c.-30+940_-30+941delAA), 54563719 (c.-30+790delA), -1kb 54557255 (c.4452delG), 54557645 (c.4061_4062delGT), 54558674 (c.3023_3033delTGTTGTTGTTG), 54559919 (c.1786_1788delTGT), 54560648 (c.1057_1059delTGT), 54561079 (c.625_628delCTCT), 54561318 (c.389delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000126295)	MSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKY
MSMv4 transcript	MSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKY
homology	100.00 (45 / 45)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	4833439L19Rik (ENSMUSG00000025871)
Transcript ID	ENSMUST00000126295

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CTCTCATGGAGCAGAGCAGGGAAGTGTTTTTGAGACCTCTGAGTGGCTAC CTCTCCAGGTCCACTTTTCTCATAGTTATTATCCATTTCCGGGGAGGCGGATGCTCCTGT ATTTAGTCCTGTACTAGTGTGGAGCCCGCCTGACTCCACTGCTAATTAAAGGGAGAAAGA TTAACTATCAGATCCTCTCTGTGTGTGGGAGGTATGGTAGTGGTTCTTAACCTGTGGGTC ACGACCCACGAAGGCGCCTACCTGGCTTCATGGTTCATTGAACTGTGCCCTTCCCCCCAG CCTTGAGCAGGCAGAATCAGACTTTGTTTCTGCCACAGTTGGCTAGCCCACCTAGGGTGG AGTCTTCCAATGTAGGTAAAGTCTATTGTGTGCCACTTCTGCAGCTTCCTGCAAGAAGCC ACCACCTGCTAACAGGCTGCCTGAGCTTGCTTTCCTGATAAAGCAATGAGAGTCTGGCAA AGTGGGGGATGGGTCTCCCCCCTTTAAATTCAAGTATGTGGGAATGGGAGACCGACTGCG GTGTCCTTGGGAGCCAGAAGAGGGCAGCAGACCCTGGGAGCTGTACTACAAGAGGTTGTG AGATACCAAACCTGGGTGCTGGGAACAAACCCAGGTCATCTGCAAGTGCAGTAATTACTG TTTTAACTGAACCATCTCCAGCCATCAATCTTCATTCTTTCCCCCCTTCTCATCCTCAGC CCCCACCACACTCCTTGATTCAGGCAATGCTCCTGCCTCAGCCTCCAAGTGCCACAATTC TGTAATCAAGTAAAAAGCGCAGAGGAAGTGCTGGAAACAGGTGACCTCCTTTCTGGGAAC CCCGTGGAATTCCCTTTTAGAGTTCAACCTACAGGGAGGTGTTCGGGTGGTGGTGGGTAC GGTGGCACGCTCAGATCTCGGACTACAACTCCCAGCATGCCCCGCGGATCTTCGAGTCAG GTCTCGCGCGACCTGCGACAGTCTCGGGGTGGTTTGGGGGTTCGGTTGCC
1	EXON 1	54,565,182	54,565,325	-	-	144	GGCCGGCGACTGTCCTCCGTAGGGGAGCGTTCGTCGCGCTCTCACGATGGCTCTGCTCTG TTCAGCCCAGCAGCCTCTTGGGCCATCTGGAGCCTCGGAGCCTCTTTAGTGCGGGAAGTC GGGCCGCAGGCGGCGGGCGAGCAG
	INTRON 1 - 2	54,564,622	54,565,181			560	GTAACCGACCGCGGCCTGGCGGAGC..........ACCTTGCTTGTTTATTGTTACTTAG
2	EXON 2	54,564,510	54,564,621	-	-	112	AGCCTCTGGATGGACCCTTCCTCAGAAGCTTCGCTAATTTGCAGAAGCTGGGCAATGCTC CTCATTAACATCTGTCTGTCTGCATAGTCCGGCGTCATTTCACTGTGGTAAG
	INTRON 2 - 3	54,561,872	54,564,509			2,638	GTGTCTGTCTAAACTGAGGTTTGGC..........TATTGACAGGTGTCTCTGTTCTTAG
3	EXON 3	54,561,708	54,561,871	-	-	164	CTCTTGCTCCCAGCGGGCCTCTAGGCAAGATGTCCCTGCCCATCGGGATGTGCCGTCGGG CATTCAGCTATGATGATGCCCTAGAGGACCCTGCGCCCATGACTCCTCCTCCATCGGACA TGGGCAGCATCCCCTGGAAGCCAGTGATTCCAGAGCGCAAGTAT
	3' upstream sequence						CAGCATCTTGACAAGGTACCTCACCCTGCTCACGGCTTCTGGCAAACTCACCCCATTTTT CTTCCTGTTCCAGAAGCTTCGGTGGTTCTCAGTCCCTACAAAACCAGGCAGCAGTTGTTC CCTTTGTACATCTTCTGTCCCTTTTTCCAATCCAAAACTTGAATAGTAGTGTTATCTACA AGAGATTCTTCTAGACTCTGCTTCCCCAGCTAAGAAGCCAAACTCCAGAACCTGCATACC TGAGTTCTGATGAGTCCTGCTTGTCTCTTTATAGCTTCTCTGTTATCCAGCTATAGTATT ATTAGAATATTTGCATAGACACAATGAGGTAGTGGGGGAAAGGACCAAGTCTAAATATGA AATTAATTTATGTTGTATGCATACCTTTTCCCTTATGTAGTCAGATTTTTATGCACTAAA TGAAATTTTACACCGGGAAGTTTTACTGTCTCTTGTGTCATGGCAGTGTGCAAAAGTTTC AGATTTTGGGGCACTTGAGAGTTTAGGTTTTTGAGTAGTGATTCTCGGCCTATATTGTAT TGCAGCAATAAAATGAAGGTCTGGCATAGAGTTCAAAAACCCTTTAAGTGGTTCGTTTTG TGATTGGCATGAGCGCAGGTCTCTCTCTAGTGCCTGCTGTGTTGTTGCTCGGGCATGGGT CACCCTGATGCCCGTCACCCAAAGAAGGTCAGCCTGGTGCCCGAGTCAGCGGGGAGCTGA GGTAAAGCCATTTCCCTGCAGCCTCTGTGGGCCTGAGAGGAAGCGTGCAGTGAGGGTCTG TGTAAGCAAACTAGGGTAGATCCTTCAGAGTCGTACCAGGGCACAGTGCCTCTGTCTGAG TGGATGTTGAGGGAGTAAAGTAGGAGACTTAGAGGCTGGGTTGGGGTGGGCGGTAGCTGA GCTGGGTGCTGTCTGAGCTTTCCTTTCTGTTTTCCTGTTACACTCTCAGAACAGGGACTT CTTCCTGTGGTCTGTCTGCGCTGCTATGTGGAGAAGAGCT..........

Sequence Detail Report

Gene Symbol (Gene ID)	4833439L19Rik (ENSMUSG00000025871)
Transcript ID	ENSMUST00000126295

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 45 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information