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Target CDS Information

Gene Symbol (Gene ID) Adgrb3 (ENSMUSG00000033569)
Cross Reference
EMBL AC116556, AC117221, AC121828, ...show all
Fantom A930003C21
MGI_trans_name Adgrb3-006
OTTP OTTMUSP00000030756
OTTT OTTMUST00000062410
protein_id BAC31839.1
UCSC uc007amy.1
UniParc UPI00000EB75E
Uniprot/SPTREMBL Q8BJ13
Vega_transcript Bai3-006, OTTMUST00000062410
Vega_translation 178858, OTTMUSP00000030756
Definition protein_id:ENSMUSP00000115442
translation:
MESSGTPSVTLIVGSGLSCLALITLAVVYAALWRYIRSERSIILINFCLSIISSNILILV
GQTQTHNKSICTTTTAFLHFFFLASFCWVLTEAWQSYMAVTGKIRTRLIRKRFLCLGWGL
PALVVATSVGFTRTKGYGTDHYCWLSLEGGLLYAFVGPAAAVVLVNMVIGILVFNKLVSR
DGILDKKLKHRAGQMSEPHSGLTLKCAKCGVVSTTALSATTASNAMASLWSSCVVLPLLA
LTWMSAVLAMTDKRSILFQILFAVFDSLQGFVIVMVHCILRREVQDAFRCRLRNCQDPIN
ADSSSSFPNGHAQIMTDFEKDVDIACRSVLHKDIGPCRAATITGTLSRISLNDDEEEKGT
NPEGLSYSTLPGNVISKVIIQQPTGLHMPMSMNELSNPCLKKENTELRRTVYLCTDDNLR
GADMDIVHPQERMMESDYIVMPRSSVSTQPSMKEESKMNIGMETLPHERLLHYKVNPEFN
MNPPVMDQFNMNLDQHLAPQEHMQNLPFEPRTAVKNFMASELDDNVGLSRSETGSTISMS
SLERRKSRYSDLDFEKVMHTRKRHMELFQELNQKFQTLDRFRDIPNTSSMENPAPNKNPW
DTFKPPSEYQHYTTINVLDTEAKDTLELRPAEWEKCLNLPLDVQEGDFQTEV

Chromosome 1
Length
Position(start - end)
158,651
25,068,168 - 25,226,820
Orient to Chromosome minus
Link Location : (1:25068168-25226820)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Adgrb3 (ENSMUSG00000033569)
Transcript ID ENSMUST00000126626
Reports
substitution
cSNPs3
Insertion76
Deletion132
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 25068237 (p.Pro630Pro), 25117303 (p.Leu188Leu), 25128833 (p.Tyr137Tyr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000126626)
MESSGTPSVTLIVGSGLSCLALITLAVVYAALWRYIRSERSIILINFCLSIISSNILILV
GQTQTHNKSICTTTTAFLHFFFLASFCWVLTEAWQSYMAVTGKIRTRLIRKRFLCLGWGL
PALVVATSVGFTRTKGYGTDHYCWLSLEGGLLYAFVGPAAAVVLVNMVIGILVFNKLVSR
DGILDKKLKHRAGQMSEPHSGLTLKCAKCGVVSTTALSATTASNAMASLWSSCVVLPLLA
LTWMSAVLAMTDKRSILFQILFAVFDSLQGFVIVMVHCILRREVQDAFRCRLRNCQDPIN
ADSSSSFPNGHAQIMTDFEKDVDIACRSVLHKDIGPCRAATITGTLSRISLNDDEEEKGT
NPEGLSYSTLPGNVISKVIIQQPTGLHMPMSMNELSNPCLKKENTELRRTVYLCTDDNLR
GADMDIVHPQERMMESDYIVMPRSSVSTQPSMKEESKMNIGMETLPHERLLHYKVNPEFN
MNPPVMDQFNMNLDQHLAPQEHMQNLPFEPRTAVKNFMASELDDNVGLSRSETGSTISMS
SLERRKSRYSDLDFEKVMHTRKRHMELFQELNQKFQTLDRFRDIPNTSSMENPAPNKNPW
DTFKPPSEYQHYTTINVLDTEAKDTLELRPAEWEKCLNLPLDVQEGDFQTEV*
MSMv4 transcript
MESSGTPSVTLIVGSGLSCLALITLAVVYAALWRYIRSERSIILINFCLSIISSNILILV
GQTQTHNKSICTTTTAFLHFFFLASFCWVLTEAWQSYMAVTGKIRTRLIRKRFLCLGWGL
PALVVATSVGFTRTKGYGTDHYCWLSLEGGLLYAFVGPAAAVVLVNMVIGILVFNKLVSR
DGILDKKLKHRAGQMSEPHSGLTLKCAKCGVVSTTALSATTASNAMASLWSSCVVLPLLA
LTWMSAVLAMTDKRSILFQILFAVFDSLQGFVIVMVHCILRREVQDAFRCRLRNCQDPIN
ADSSSSFPNGHAQIMTDFEKDVDIACRSVLHKDIGPCRAATITGTLSRISLNDDEEEKGT
NPEGLSYSTLPGNVISKVIIQQPTGLHMPMSMNELSNPCLKKENTELRRTVYLCTDDNLR
GADMDIVHPQERMMESDYIVMPRSSVSTQPSMKEESKMNIGMETLPHERLLHYKVNPEFN
MNPPVMDQFNMNLDQHLAPQEHMQNLPFEPRTAVKNFMASELDDNVGLSRSETGSTISMS
SLERRKSRYSDLDFEKVMHTRKRHMELFQELNQKFQTLDRFRDIPNTSSMENPAPNKNPW
DTFKPPSEYQHYTTINVLDTEAKDTLELRPAEWEKCLNLPLDVQEGDFQTEV*
homology100.00 (653 / 653)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Adgrb3 (ENSMUSG00000033569)
Transcript ID ENSMUST00000126626
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGCCAGTGACCTCAGGCATTAAAAACTGTTACAGGCAAAACCAAAGGTAC
ATAGAAACTAACACTAATCAATGTGAGGTTTCCCCTTCAAGTTTTAGAGTCACTTTTTAA
CACATATAGTAACTTGGCTAAAATATTTAAGTACACTCACACATACAGGTTTCCTAGCTG
GAGAGTTTCCATGCCTGGGGGGAGGGGAGGTGACAATTGGTGCATTCTATACAGAGCACG
TGTAAGGATAATAAAGTTGATTGGTTGAGCCTTGCAGCTCGCCCTTTTCCTCTCTGTCTA
CAGAGTAGTTCAGCAGGGGGGCGGGGGCGGGGGGGGGTGACAGGGTTCTCCCCCATCACC
ACCAGCTCTACTAACGAGACGTAGGTTGATACCATTTTTATTGTTCTGCTGGGGTGGGAA
AGAAACCATATGCTTTAGCATTTTAAATGGCTACACCAAAGAGAAAACTGAACCAGACCC
CCTCCCCCATCCTGCTGGACTTTGGGGTGGGCTTATTCTAAATATTCGGTGGACTTGGAA
TTAGCTTAATGTTTCTGTGCTTGGACAAAGAGGCAGTTGAGGGCAAGTAATATTAAGGGG
CTTTAGAAGAGCGTTCGAATAAGTGAAGTGTGGAGTGGGAGCTTAATCTGAAGCCCACCC
CTCCCTGGATACCAGGCAAAGGCAGTGAGAGTCGGAACCAGCTGATACCTCTTCCCGTTT
CCAGGGTGAAATTTTCACAGCAGCTAATTCTAAAGGGAAGAAAAATCCCTTACCAGCAGC
GGAGAAGATCATATCACCCAACCCAAGCTATGTAACCTTTTAGGCAGGCTTTTCAGAGAA
ATCCGCATTTTAAAAGACAGCATTCACGGTCCAAACCACGGGCCTGGAATCAGAGCTGGT
ATGAAAATATGAAAAGCCTCTTTACACTCTGAGTGTTTGAAACGATCCGATGAGCATAGC
AAGTGTCTGCCAACGCTCGGCGGCTGCTGGTGCCGCTGCCGCCGCCGCTA
1 EXON 1 25,228,655 25,228,826 - - 172
TTTCTCGCAGAGGGCTGGACAGAGCTAGTCCTGATTTCAGCACCTCCGGCGCTGGACAGC
TCTCTGCACGCCGCACCACCGCCTGCTTGCTTTTTTCCCACTCTCGCTTTGCATTACTGG
AGATGCATCTAAATTACGTCCTGTTCAACAACAAGTAGATTTTTTTTTTCCT
INTRON 1 - 2 25,228,548 25,228,654 107
GTACGGGAATTACAGTAGGCGATTC..........GATCTCCCCTCCACCCCCTTTGCAG
2 EXON 2 25,228,421 25,228,547 - - 127
GAACGAGTCTTTGGGAACGTGGTCCACCCAGGGATGTAAAACTGTGCTTACCGATGCATC
CCATACGAAATGCTTATGTGATCGGCTCTCTACCTTCGCCATTTTGGCTCAGCAACCTAG
AGAAATA
INTRON 2 - 3 25,226,824 25,228,420 1,597
GTAAGTAACAAAGGGAAAACACGGC..........TTCTTCCCCTCCCCCCAACTTACAG
3 EXON 3 25,226,720 25,226,823 - 2 104
GTCATGGAATCCTCTGGTACCCCCTCAGTTACCCTCATAGTAGGCAGTGGCCTCTCCTGC
CTGGCCTTGATAACTCTAGCAGTTGTGTACGCAGCACTATGGAG
INTRON 3 - 4 25,221,863 25,226,719 4,857
GTATGTAATTAGTGGGTAGACCTGA..........AAATTTATCACATTTCTTTCACTAG
4 EXON 4 25,221,760 25,221,862 2 0 103
GTATATTCGCTCTGAGAGGTCCATCATTCTAATTAACTTCTGCCTGTCTATCATCTCATC
CAATATCCTCATACTGGTTGGACAGACTCAGACACACAATAAG
INTRON 4 - 5 25,131,402 25,221,759 90,358
GTATGACAGCTGACTCCTCCCATCC..........GCGCTTCCTCCTTCTGTCTCCACAG
5 EXON 5 25,131,251 25,131,401 0 1 151
AGCATCTGCACGACCACCACCGCGTTCCTGCATTTTTTCTTCCTGGCTTCATTCTGTTGG
GTCTTGACAGAGGCGTGGCAGTCGTATATGGCTGTGACAGGAAAAATCAGGACCCGGCTT
ATAAGAAAACGCTTTTTGTGCCTTGGATGGG
INTRON 5 - 6 25,128,889 25,131,250 2,362
GTAAGCTTATTAATAGGCCCTTTAC..........AAGTGTCACCTTGCTTTTCTTGCAG
6 EXON 6 25,128,819 25,128,888 1 2 70
GGCTGCCAGCTTTAGTAGTGGCCACATCTGTAGGCTTCACTAGGACGAAAGGATATGGCA
CGGATCACTA
INTRON 6 - 7 25,126,708 25,128,818 2,111
GTAAGTCCATCTATAATGCTACCTT..........TAGTTTTATCTAATGCTATTTTTAG
7 EXON 7 25,126,641 25,126,707 2 0 67
CTGCTGGCTGTCTCTAGAAGGAGGACTGCTCTATGCCTTCGTTGGACCTGCAGCGGCTGT
TGTCCTG
INTRON 7 - 8 25,117,375 25,126,640 9,266
GTAAACTCGGAATTCGCTTACTTGA..........GGTCAACTTTGTTTCTGTTTGACAG
8 EXON 8 25,117,289 25,117,374 0 2 86
GTCAACATGGTGATTGGCATTTTGGTATTTAATAAACTTGTTTCCAGAGATGGGATCCTA
GATAAAAAGCTCAAACACAGAGCCGG
INTRON 8 - 9 25,112,276 25,117,288 5,013
GTAAGCTGCCATTGGTGGATTTTGA..........TTGTGGGTGTTCTGTTTGTTTGCAG
9 EXON 9 25,112,177 25,112,275 2 2 99
TCAGATGAGTGAGCCTCATAGCGGTCTGACGCTCAAATGTGCCAAGTGTGGAGTAGTTTC
TACAACAGCTTTGTCAGCCACCACCGCCAGTAACGCCAT
INTRON 9 - 10 25,111,864 25,112,176 313
GTTAGTCTCAAAAATTTACATCTTC..........GTCGCTTTCTTTTCCCTTTCAACAG
10 EXON 10 25,111,692 25,111,863 2 0 172
GGCCTCTCTTTGGAGCTCCTGTGTGGTGCTACCGCTTCTGGCTCTGACATGGATGTCTGC
AGTTCTGGCCATGACAGATAAACGCTCCATATTGTTTCAGATACTTTTTGCCGTGTTTGA
TTCATTACAAGGCTTTGTGATAGTCATGGTCCACTGCATTCTTCGGAGAGAG
INTRON 10 - 11 25,101,529 25,111,691 10,163
GTGAGACATAGATTTCCTCTGTAAA..........AATGTTTTTTTTTTCCTCCCCACAG
11 EXON 11 25,101,433 25,101,528 0 0 96
GTTCAAGATGCATTTAGATGCCGGTTGAGAAACTGCCAGGATCCAATCAATGCTGATTCT
TCAAGTTCTTTTCCTAATGGACATGCTCAAATCATG
INTRON 11 - 12 25,098,916 25,101,432 2,517
GTGAGCTTTTATTTTCCTTCTGGTT..........TATGCCTTATTATTTCTTGTTACAG
12 EXON 12 25,098,876 25,098,915 0 1 40
ACAGACTTTGAAAAGGACGTAGACATTGCTTGCCGATCAG
INTRON 12 - 13 25,094,409 25,098,875 4,467
GTAAGAGTATTTTGATCTTTAAGAT..........TTAACTACCCTGCTCCAATTTGCAG
13 EXON 13 25,093,765 25,094,408 1 0 644
TGCTTCATAAGGATATCGGCCCCTGCCGCGCAGCAACCATAACAGGAACACTCTCCAGGA
TTTCTCTAAATGATGATGAGGAAGAAAAGGGAACAAACCCTGAAGGGCTAAGCTACTCAA
CATTGCCTGGAAATGTCATTTCCAAAGTCATCATTCAACAGCCCACAGGCCTGCACATGC
CTATGAGTATGAACGAGCTAAGCAATCCGTGTCTGAAAAAAGAGAACACTGAACTGCGGA
GAACTGTGTACTTATGCACGGATGACAATCTGAGAGGGGCCGATATGGACATTGTCCACC
CCCAAGAACGAATGATGGAAAGTGACTATATTGTGATGCCTAGAAGTTCTGTAAGCACCC
AGCCATCAATGAAAGAGGAGAGCAAGATGAATATTGGCATGGAAACCTTGCCGCATGAAA
GGCTATTACACTACAAAGTAAACCCTGAATTCAATATGAATCCCCCCGTAATGGACCAGT
TTAATATGAACTTAGATCAGCATCTTGCACCCCAGGAACATATGCAGAATTTACCCTTTG
AGCCTCGCACAGCTGTGAAGAATTTCATGGCCTCTGAGTTGGATGATAATGTGGGACTGT
CAAGAAGTGAAACTGGATCAACGATATCAATGAGTTCTCTAGAG
INTRON 13 - 14 25,084,280 25,093,764 9,485
GTGAGTCAGAAGAGGTTAACTAGTT..........CCTTCCTCTAAAAACAAACTCACAG
14 EXON 14 25,084,244 25,084,279 0 0 36
AGAAGAAAATCGCGGTATTCTGACCTTGACTTTGAG
INTRON 14 - 15 25,074,790 25,084,243 9,454
GTGAGTTCCTATGTATTACTTTGTA..........AGAGCCGCCCTCTTCTCTCTTACAG
15 EXON 15 25,074,685 25,074,789 0 0 105
AAGGTCATGCACACAAGGAAGAGGCACATGGAATTGTTTCAGGAACTAAATCAGAAGTTT
CAGACTTTGGACAGATTTCGGGACATACCAAACACAAGCAGTATG
INTRON 15 - 16 25,068,357 25,074,684 6,328
GTGAGTATATTCTGCATCCACAATG..........CTATTCTTTTTTTTTTCCTCAACAG
16 EXON 16 25,067,476 25,068,356 0 - 881
GAAAACCCAGCACCAAACAAGAATCCATGGGACACTTTCAAACCCCCCAGTGAATACCAA
CATTACACCACAATCAATGTCTTAGACACGGAGGCAAAGGATACTCTGGAGCTGAGGCCT
GCCGAGTGGGAGAAGTGTCTGAATTTGCCTCTGGATGTGCAAGAGGGTGATTTTCAAACA
GAAGTGTAAGGCAATCAAAAAGAACTTAGGTAGAGACACAGTCAAATACACTGACACTGA
GACTTGGGAAGCCTGACATTTCCACCTGGACAGTGTGACTTTCCTCTGTCAGGACCCTTC
TTGTGCCAACATCAGTGTTTTCTTATGGCAATTTCTCACTGGTCAGGCTAGTGGAGAGAG
ATGGCCAAGTGTACAGTTCTCACCACCCCGTGTTGTAAGTACCCGTGGAATGGATTTGTA
AGGTAATCTTTATAGATAAACCTCAAGCAAGGATTTCATGTTGTAACAGCTTCATGTGGT
TTAGTTTTCAGAAAACTTCACCATGAAGCACAATGTATATATTTATGCAGTTTTTAAAGT
TTATAACAGTCTGTTTGGCCATTACTACACTTTTTACTTTATAATATAAAAGCAAAGTTT
TTGTCATTAAATGAATGTTTGTTGAGCTACATTCTTCATTGCTTTAAATGCAATAAAGTA
ATAATCTCACTTTTATATGAATAATATATTTCACATCTTTATTATTGCAGTTTTCTCTAG
AAGGCTCTGAGTAGCTTTCTCTGCTGCAGCTGTGTATAAAATATTTAAAATGTTGTATGG
TGTAAATAAACTTTTGTCTACATATCAGTTTTTTAGTGCATTTTATTTTGGATTTGTTGA
ACAGAAATTTACATATTTATAACGTTTTCTTTTTCAATACC
3' upstream sequence
GACACTAAAATGTATTCAGAGTTTTAACGGCATACCATTATTACTCCTTTGAGCCTAATG
ATTTCTCAGTGTAATAATAGGTTTGTATAGTGCTTCTCTATGTCCTACTTAAACGCCCTT
CGGAATAATGTACCATGTAAATGGGGTTTGTCAGAAATCTGTGACTATCATCTTCGTCAT
ATCATCATCTTCCCTTCTGTCTTGAGTCAAAATGACAAGTGGAAGGAAACCCTAGGCTAC
TCAACAGAAGATGATGCAGGGGAATGATTTAGGTGATTAAGTTTGCTGCATGTTTCCCAG
AAAATGAGTTCTACTGGAGTTCTTCATAATATAAGCATCAACGAACTTATCTGAGACCTT
AAATATCTGATCTGCATACTCACTGGCAGAAGGAAAAGGATAATCGATGTGGTTGTCTCT
GGTTTGAAAGTAAAGAACCCAAGATGAGCCAACTGCACAAGCAGTTCCCAGTGCCCTCTC
TCATGGCGATGTCTCTCGCTTCCTCAGATGTCTGTTCAACGAAGGCCAAGAGGGAATTGA
GCAACCGCCAGGGCTTTGGAGAGTGTATCCTTGTTTTGTTTTTTGTTTTTTTTTAACTAG
ATATTTTCTTTATTTACATTTCAAATGCTATCCCGAAAGTTCCCTATACCCTCCTCTGAC
CCCGCCCTGCTCTCCTACCCACCCACTCCCACTTCTTGGCCCTGGCGACCCCCTGTACTG
GGGCATCTTGCAGATCGAAGGTAATGGAGAGAAGATTGGAGGTGTGTCCTCGTGTGTCCC
AGAATGCTTCATTGGATTCGCTTCCAGCTAAGTCTGAGCTGTGTGGTCTGTGTTTGGAAC
TTATGTAGATCAGTTTGTTCTCCTGGTGACCTTGGGGGACTCTGACATGCAGGATGGAAG
GAAGAGACCACACCATGGTGCTTCAATCTTCAAGTGCACCCCTGAGCTGGAGCCTTAGCC
ACACAGCTCAGGCAGAATCCCGTCCCGTGCTGAAATGTGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Adgrb3 (ENSMUSG00000033569)
Transcript ID ENSMUST00000126626
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 653 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information