MoG+ -Mouse Genome database with high added value-

Tutorials are available here.

BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Tpm3 (ENSMUSG00000027940)

Cross Reference

MGI_trans_name	Tpm3-008
OTTP	OTTMUSP00000038135
OTTT	OTTMUST00000073609
UniParc	UPI00016116DA
Vega_transcript	OTTMUST00000073609, Tpm3-008
Vega_translation	187790, OTTMUSP00000038135

Definition

protein_id:ENSMUSP00000115565
translation:

MKVIENRAL

Chromosome

3

Length
Position(start - end)

25
90,087,459 - 90,087,485

Orient to Chromosome

plus

Link

Location : (3:90087459-90087485)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000127955

Reports
substitution
cSNPs	0
Insertion	7
Deletion	8
SNPs	-1kb 90075657(c.-11802C>T), 90075866(c.-11593C>A), 90076048(c.-11411A>G), 90076143(c.-11316C>T), 90076310(c.-11149T>A), 90076448(c.-11011A>G), 90076465(c.-10994C>T), 90076691(c.-10768T>C), 90076761(c.-10698T>C), 90076848(c.-10611T>C), 90076893(c.-10566C>T), 90076987(c.-10472A>C), 90077022(c.-10437T>C), 90077222(c.-10237C>A), 90077240(c.-10219T>C), 90077307(c.-10152A>G), 90077405(c.-10054T>C), 90077420(c.-10039C>A), 90077441(c.-10018C>T), 90077591(c.-9868G>A), 90077632(c.-9827T>C), 90077650(c.-9809G>A), 90077856(c.-9603T>A), 90077999(c.-9460C>A), 90078203(c.-9256A>G), 90078207(c.-9252C>A), 90078267(c.-9192C>T), 90078392(c.-9067T>C), 90078518(c.-8941G>A), 90078785(c.-8674G>C), 90079005(c.-8454G>A), 90079009(c.-8450C>T), 90079202(c.-8257G>A), 90079420(c.-8039G>T), 90079487(c.-7972G>C), 90079540(c.-7919G>C), 90079542(c.-7917G>A), 90079548(c.-7911C>G), 90080028(c.-7431A>G), 5'UTR CDS 3'UTR INTRON 90081728(c.-139+1111G>A), 90082107(c.-139+1490T>C), 90082194(c.-139+1577A>T), 90082242(c.-139+1625T>G), 90082266(c.-139+1649G>C), 90082942(c.-139+2325G>A), 90083604(c.-138-2842A>G), 90083715(c.-138-2731T>C), 90083925(c.-138-2521T>G), 90084001(c.-138-2445A>G), 90084081(c.-138-2365G>T), 90084579(c.-138-1867C>A), 90085366(c.-138-1080A>C), 90085574(c.-138-872C>A), 90085585(c.-138-861A>G), 90085794(c.-138-652A>G), 90085863(c.-138-583G>A), 90085888(c.-138-558C>T), 90085944(c.-138-502T>C), 90085956(c.-138-490C>T), 90086049(c.-138-397C>T), 90086059(c.-138-387C>T), 90086093(c.-138-353G>T), 90086223(c.-138-223G>A), 90086270(c.-138-176C>A), 90086417(c.-138-29A>G), 90086944(c.-5+365T>A), 90087211(c.-4-244G>A), 90087375(c.-4-80G>A), +1kb 90087587(c.102C>T), 90087822(c.337T>C), 90087987(c.502T>C), 90088058(c.573G>A), 90088202(c.717T>G), 90088223(c.738A>G), 90088300(c.815C>T), 90089362(c.1877G>A), 90089895(c.2410G>A), 90089897(c.2412C>A), 90090122(c.2637C>T), 90090158(c.2673A>T), 90090313(c.2828G>A), 90090350(c.2865T>C), 90090416(c.2931C>T), 90090554(c.3069T>A), 90090579(c.3094A>G), 90090621(c.3136G>C), 90090680(c.3195C>T), 90090733(c.3248T>C), 90090841(c.3356T>C), 90090864(c.3379T>G), 90091186(c.3701T>C), 90091281(c.3796G>A), 90091334(c.3849C>T), 90091345(c.3860G>A), 90091470(c.3985G>A), 90091488(c.4003T>C), 90091494(c.4009T>C), 90091601(c.4116A>C), 90091887(c.4402A>G), 90092173(c.4688G>C), 90092203(c.4718A>T), 90092312(c.4827C>G), 90092355(c.4870A>T), 90092451(c.4966T>A),
Insertions	-1kb 90075769 (c.-11690_-11689insA), 90076153 (c.-11306_-11305insTTT), 90077816 (c.-9643_-9642insGT), 5'UTR CDS 3'UTR INTRON 90082277 (c.-139+1662dupT), 90084062 (c.-138-2383_-138-2382insTTT), +1kb 90089016 (c.1531_1532insCCCCCT), 90092060 (c.4575_4576insG),
Deletions	-1kb 90077271 (c.-10187delG), 5'UTR CDS 3'UTR INTRON 90081404 (c.-139+790_-139+792delCCT), 90081550 (c.-139+950_-139+957delTGTCTGTC), 90082589 (c.-139+1988delA), 90085814 (c.-138-629_-138-627delGAG), +1kb 90088067 (c.583_590delTTTTTTTT), 90089320 (c.1836delC), 90090436 (c.2952_*2957delAACAAC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000127955)	MKVIENRAL
MSMv4 transcript	MKVIENRAL
homology	100.00 (9 / 9)

Exon Detail Report

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000127955

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GTAGCCTTACCAAACCCCGCCCCCTTTACTGGACTAAGGAAAGACCGCCC TGAGTGGTCGCCTAGGGTTACTGGGAGGCTCCACCCTTCACTTTCTGCCGACTGCCGGAG TGGACTGCGTTCCCGCCTGCTTGGCAGGGGGAGGACGCGCGGTGGCGGCGGCGTCACATC CCGGCGTATGAGTGAGTTCCGGTATTTCAGGGCGGAGCAGGCGGAAGTAGGGTGAAAAGC GGCTACAACGCCGAGCGGAGGAGGTAGGAACCTGATTTCCAGAAGCAGCTTGTAGGCACC ATGGCCGGGACCACCACCATCGAGGCGGTAAAGCGCAAGATCCAGGTTCTGCAGCAGCAA GCTGATGATGCGGAGGAAAGGGCCGAGCGCCTCCAGCGGGAAGTGGAGGGAGAAAGGCGG GCCCGGGAGCAGGTACGCACGGAGAGCCGAGGCGCAGCAGGGAAGGGCTCGGCGTCCCTC TGCTGTGCTCAGCTCCATGGAGCCTTGGAAACCCGGACTAGTCATGGAGTCCTAAGGTTG GGTGGGACTCGATTACGATGGCCCGGTAAGCGGATGCGGAGGAAACTTAAGTGCTCGCGC GAGCAGGCTAGACCCTGGAAAGAATCGAGCCCCGCGCGGCGCGGGCTGCCCTCTCCCTTT TTCCCCCCAGCTCATTCATTCGGTCCCTCGGAGCCGGGCGCGGTCAGGGGAGGGGCTCGG CGGCCTTTCCCTCCCCCACTTCTCTGCGAAGGGTGGGGACCTTTTACTCTCGCCTGAGGT TTCCGGTCTGAGGGGTAGAAGTGAGCGCTCCTCTGGGCTGGGAGGGGCCGAGCGTAACCT GTGAAAAATGAGGGTGGGAGGTGGGAGCCGCCGGAAAGCCCCCGACCTGGCCCACTGGCG GCTTTTCCGCTCCCTCCTCCTCCTGCTCAGGAAATGAGCCAGCAGTTGGCTGAGAGGAAG CGCGGTTCCCTCCCTCACTGGTCGAGCTTAAGGCCGCGCCACCTCCTCGC
1	EXON 1	90,080,442	90,080,617	-	-	176	ATCCTCGAGCCTGGGGACCTTTCCTAACTAACTGGCACTCCCGCCCCTCACTTGTGAAGT GGGAGAGGAGCTGCTACTTCGCCCGTTGTTAGCAAATGTCGGAGCCAGCAAAGTTCCTAG ACCCTGCCCATCAGGACCTGGAAGGCAGGAACTTCTGCCAGATTCAGGCCTGAAAT
	INTRON 1 - 2	90,080,618	90,086,445			5,828	GTGAGCAGTACAAATTTGAACATTC..........GTTTTCCATTTCCCATTGATTGAAG
2	EXON 2	90,086,446	90,086,579	-	-	134	GCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGAC CGTGCGCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCAGAGAAGGCTGCT GATGAGAGTGAGAG
	INTRON 2 - 3	90,086,580	90,087,454			875	GTGTGTGAATCCCAAAAGAATAGGC..........CATTCTTTCATTCTGTTTCCGGCAG
3	EXON 3	90,087,455	90,087,485	-	-	31	AGGTATGAAGGTGATTGAAAATCGGGCTCTA
	3' upstream sequence						AAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAGCTAAAGGAAGCAAAGCACATTGCA GAAGAGGCCGATAGGAAGTATGAAGAGGTGAGTTGCCTCTGTAGTGCGTGCGGGCCCTGC AAAGACAGTCAAGAGGGGATAGCTATCGCCCTGGCTTGATTGAGCCGTACTGGGGTCTTT TCTTCTAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAAC GTGCTGAGCTGGCAGAGTCGTGAGTATTTTGTCTCCAGATCTTGTCAGCTCATCCTGCCT GCTTGGGCACTAATTCCGAGTAAACTAGCCTTCCTTCGACCTTGTTAAACAGGCCCTGGA GGGTGGTGGTCCTCTGTAGTGCTTTTAGCCTCCAAGAATGGCTTTGGGCTTTCTCTTACC TTGACTAGAAACAGGGAACAAAGCTTGCTTATTCTTGGGAAGATTCTCAAATAGAGGGAC CATAGAGACTAATATGGCCACCGGCTAGTTGGAAGATCCTATTGGGTCCTTCCTCCTGGA ATCTATTCCTCCTTGGCCTGTACCGATTTCGGGCCTGGTCTCTTTTTTTTTTTTTTTTTT TTTTTTTTTACAAACTTTGCCAATCTGCCTGGAAACTTGAGAGCAAAGGCTTTAGAGAAA TCACCTGCTGCCTTGGTACCAGCTTGGCCTTGTGTAACAAAGTCAGCGTGGATGTGGATG TGTTGTGCTTGCCTCGCGCACTCCCCGTCCTCTTCAGACATGACATATATCATGACCATG GCGGTGTTTCCTTTCCATCTGTTTGTTGTTTTGATCCACCCCACACCCCGTCTTGCGGCT TGTTTTCTTGCTCTTCCTTTTTTAACCTTTTCCCCACAACCTGGCTTGTGCCATTCCCGT GACTGTCACTAACAGCCGTTGCCGAGAGATGGATGAACAGATCAGACTGATGGACCAGAA CCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGGTACTAACC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000127955

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 9 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information