MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Shc1 (ENSMUSG00000042626)

Cross Reference

EMBL	AC171273
GO	GO:0000165, GO:0000187, GO:0001525, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Shc1-007
OTTP	OTTMUSP00000024852
OTTT	OTTMUST00000052409
UCSC	uc008pzm.2
UniParc	UPI0000F22272
Uniprot/SPTREMBL	D3Z2I8
Vega_transcript	OTTMUST00000052409, Shc1-007

Vega_translation

187723, OTTMUSP00000024852

Definition

protein_id:ENSMUSP00000119293
translation:

MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCV
EVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGM
PITLTVSTSSLNLMAADCKQDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAF
ELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRL
REGAARPTLPSAQMSSHLGATL

Chromosome

3

Length
Position(start - end)

4,520
89,422,181 - 89,426,702

Orient to Chromosome

plus

Link

Location : (3:89422181-89426702)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Shc1 (ENSMUSG00000042626)
Transcript ID	ENSMUST00000128238

Reports
substitution
cSNPs	3
Insertion	5
Deletion	9
SNPs	-1kb 89413840(c.-8341A>G), 89413993(c.-8188A>G), 89414372(c.-7809G>A), 89414442(c.-7739C>T), 89414594(c.-7587C>A), 89414700(c.-7481T>C), 89414701(c.-7480C>T), 89415690(c.-6491G>A), 89415695(c.-6486C>T), 89415698(c.-6483G>A), 89415836(c.-6345G>A), 89415841(c.-6340G>A), 89415842(c.-6339C>A), 89416908(c.-5273G>A), 89417351(c.-4830A>G), 89417435(c.-4746A>G), 89417623(c.-4558C>A), 89418190(c.-3991A>G), 5'UTR CDS 89423556(c.285G>A), 89424866(c.573A>G), 89426656(c.741C>T), 3'UTR 89418613(c.-100G>A), 89418617(c.-96G>A), INTRON 89419175(c.-4+466T>C), 89419435(c.-4+726A>G), 89419481(c.-4+772C>T), 89419529(c.-4+820T>G), 89419574(c.-4+865T>C), 89419813(c.-4+1104T>C), 89419865(c.-4+1156C>T), 89420346(c.-4+1637T>C), 89420362(c.-4+1653T>A), 89420363(c.-4+1654T>C), 89420837(c.-3-1341T>A), 89420871(c.-3-1307G>A), 89420895(c.-3-1283C>T), 89421661(c.-3-517C>G), 89422438(c.165+93C>T), 89423635(c.301-62T>C), 89423693(c.301-4T>C), 89423894(c.420+78T>C), 89425765(c.600-750G>A), 89426009(c.600-506C>T), +1kb 89427121(c.419T>C), 89427300(c.598C>T), 89427988(c.1286A>T), 89428012(c.1310C>T), 89428084(c.1382C>A), 89428287(c.1585T>C), 89428481(c.1779T>C), 89428635(c.1933G>C), 89428712(c.2010C>T), 89428846(c.2144A>G), 89429088(c.2386T>A), 89429422(c.2720T>C), 89429510(c.2808C>A), 89429650(c.2948T>C), 89429703(c.3001T>A), 89429904(c.3202G>A), 89430031(c.3329T>A), 89430181(c.3479T>C), 89430193(c.3491G>C), 89430248(c.3546C>G), 89430533(c.3831G>C), 89430762(c.4060G>A), 89431388(c.4686G>A), 89431644(c.4942C>T),
Insertions	-1kb 89418067 (c.-4115_-4114dupCC), 5'UTR CDS 3'UTR INTRON 89424159 (c.420+347dupC), 89425675 (c.599+806_599+811dupGTGTGT), 89426204 (c.600-308_600-299dupTTTTGTTTTT), +1kb 89429156 (c.2454_2455insC),
Deletions	-1kb 89417274 (c.-4906_-4904delAAA), 89418118 (c.-4062_-4061delCT), 89418122 (c.-4058_-4057delCT), 5'UTR CDS 3'UTR INTRON 89424737 (c.473-27_473-26delTC), +1kb 89426919 (c.218delG), 89427806 (c.1105_1109delGTTTT), 89428588 (c.1887delA), 89428715 (c.2014delC), 89431279 (c.4578delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	3
non-synonymous num	0
synonymous substitutions	89423556 (p.Ala95Ala), 89424866 (p.Pro191Pro), 89426656 (p.Pro247Pro),
non-synonymous substitutions
B6 transcript (ENSMUST00000128238)	MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCV EVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGM PITLTVSTSSLNLMAADCKQDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAF ELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRL REGAARPTLPSAQMSSHLGATL
MSMv4 transcript	MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCV EVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGM PITLTVSTSSLNLMAADCKQDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAF ELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRL REGAARPTLPSAQMSSHLGATL
homology	100.00 (262 / 262)

Exon Detail Report

Gene Symbol (Gene ID)	Shc1 (ENSMUSG00000042626)
Transcript ID	ENSMUST00000128238


..........GAATGATCAAGTATTTGAAAGGTATCTACACACGGCCACAGTCTTCATGC
CACTCCAAGTCCTGTAAAAGCCTATCTAAAACAAGGCTGACAACTACTCATCTTTTTTAT
AAACTAAAAACCACCAACACTGAGGCTCTCTTAGAACCGTCCTTTCATCAAGAGCATGAA
ACTTTCAGTTCTGCACGGGCTACCTTCTTTCTCCCAGCAGACTTTGAGATTTCAGTAACG
CGAGCAGTTCCTATTAGGGAAATCGCCACAACAAAGTTGCTTTAGTGATGTGAATTCCCA
GAGGTAAAACTGATCAGAGCTACAAGACGCTTCAATTTAACAGCCGGCCAACTCTAAGTT
CCCTTTCATTGTTTTACATCCTCCGTCCACCTTTTGCGCATGTGCTTTGCTGCTGTACCC
AATCCCACCCCCACCCCACTCCCCGGTAATTCCTTGCGCACGCGCCCGTTCTACACTGTC
CCCCGCCCCCATCCCCCGCCTCCCACTCCGGCCTAGGTAACTAACTCCTCGCGTGCTCTC
TTTTGTCTGTAGTCCCCGCGCCGGCACTAACCGGTATTCGAACTCCTCGTCGTCGTATTT
GTCCGAGTAGTAGATTTGTTTGTGGGACATGATTGCTCTGTCCGAGGGCGCTCAGCCCCG
CGCCGCAGGCCTCCAGACAACTCCCAGCAGCACGCGCTCCCACCCTCTTTGGCCTCGCTT
TCAAACACACCGCCCGCACTTCCTATTGGTCTCTGCGGCCGAAGGCGGGACAGCTCCATT
TTGAAGTCCTCGATTGGCTTGCTTTGGCGTCTCTTCAAGTCGTAAATGGAGTGCTGTGCT
CAGGTTTCTGAAGAATGAGCTGGGTCAAACTAGGATTCTCATTGGCTCTCACTGCGCCCC
TTGAGCCTGCTGGCGCAGCCATTGGCCAACTTTGGAAAGCAGACGGGTAAAGGAGGGACA
GCGAGGTAGGGGGTCAGGGGTTAGTGAGGCCGGAAGTGAGTGTAATAAAG
TTTGTCTGGGGAGGCCCAGACTGAGGTGAAAGTTGGGGCGGTGACTTAAGCAGACAGTTGCGTGATCCGGAACCAGATCGGCCCGCGGTGCGGTGCGGAGACTCCATGAGACCCTG
GTAAGTCTAGACTTTCTTTCTGTGG..........CTCAGGCCTCTTGCCCCTCCTCCAG
GACATGAACAAGCTGAGTGGAGGCGGCGGGCGCAGGACTCGGGTAGAAGGGGGCCAGCTGGGGGGCGAGGAGTGGACCAGACACGGGAGCTTTGTCAATAAGCCCACACGAGGCTGGCTGCATCCCAACGACAAAGTCATGGGACCTGGGGTTTCCTACTTGGTTCGG
GTGAGTGCATACCCCCCTCCCACTC..........CCATTCTTCCCTCCTTCCCCTACAG
TACATGGGCTGTGTGGAGGTCTTACAGTCAATGCGAGCCCTTGACTTCAATACCCGGACTCAGGTCACCAG
GTTAGTGGGAAGGCGGGTATATTGC..........GGTCTGAGTACTCCTGTTTCTCCAG
GGAGGCCATCAGTTTGGTGTGTGAAGCTGTGCCTGGTGCCAAAGGGGCAACAAGGAGGAGAAAG
GTATATGTGGTGGTTGGGGCTGGGT..........TCTGAGACTCTGGGCCCTTTCCTAG
CCTTGTAGCCGCCCACTCAGCTCCATCCTGGGGAGGAGTAACCTGAAGTTTGCTGGAATGCCAATCACTCTCACTGTGTCTACCAGCAGCCTTAACCTCATGGCAGCCGACTGCAAACAG
GTAGGTAGGGCTGCTGAAAGGGACC..........GGTCTCCTGAATCTACCCTCTCCAG
GACACAGCTGAGTATGTTGCCTATGTTGCCAAAGACCCTGTGAATCAGAGAG
GTGAGGCTTGCGGGCAGCACTGGGT..........ACTGGTGGTCTCCACTGTGTCCCAG
CCTGCCATATCCTGGAGTGTCCTGAAGGGCTTGCTCAGGATGTCATCAGCACCATCGGGCAGGCCTTTGAGTTGCGCTTCAAACAGTATCTCAGGAATCCGCCGAAGCTGGTCACCCCCCATGACAG
GTGAGCTGGTGGGAGAGGGCGAGGC..........TCTTCTCTCATCCTTCTCTTTTCAG
GATGGCTGGCTTTGATGGCTCAGCTTGGGATGAGGAGGAAGAAGAGCCCCCTGACCATCAGTACTACAATGACTTTCCAGGGAAGGAACCCCCTCTTGGTGGGGTGGTAGATATGAGGCTTCGGGAAGGGGCTGCTCGACCTACTCTGCCTAGTGCCCAGATGTCCAGCCACTTGGGAGCTACACTGG
TAAGGAGCCAGGATGGAGATGCTTAAGACCAGGGTGGGAATGGCTGGCTAGGGCCTTGGT
CTCACCCAATTTTCTTCTTCTGTAGCCTATAGGGCAGCATGCTGCAGGAGACCATGAAGT
CCGTAAACAGATGTTGCCTCCGCCGCCTTGCCCAGGTGAGCACAGTTTGCTGATACGGAC
AGAGATGAGTACAGAAGGCGGGGCTGGGATTGATGCTGTCTTTTTTTCCTTAACAGGCAG
AGAACTCTTCGATGACCCCTCCTATGTCAACATCCAGAATCTAGACAAGGCCCGGCAGGC
TGGGGGTGGGGCTGGGCCCCCAAATCCTTCTCTTAATGGCAGTGCACCCCGAGACCTTTT
TGACATGAGTGAGTGAGTCTCTTGTAGCCCCACCTTCCGTTGTTCCTTCTTTTCTGCCCG
TTCTCCCCTACCTGGCTTCCCACACTGAGTCTGGGTCTCAGGTGATACTGGGGCACCTCT
CCCAGCTGTCTCTCTACACCCCTAGAGCCCTTTGAAGATGCACTTCGGGTGCCACCCCCA
CCGCAGTCCATGTCCATGGCTGAGCAGCTGCAAGGGGAGCCCTGGTTCCACGGGAAGTTG
AGCCGGAGGGAGGCCGAGGCGCTGCTGCAGCTCAATGGTGACTTCTTGGTGCGAGAGAGC
ACGACCACGCCTGGCCAGTATGTGCTCACTGGCCTGCAGAGTGGGCAGCCCAAGCACTTG
CTGCTGGTGGACCCTGAAGGTGTGGTAAGTGTGACAGAGGTGTGGCAGGGGCTGGTGTGG
TTTTGCTTTCTAGACTTCCTTTGCCGGAGGCTTCCTGTGGACTCCTTTGCCCTTGCTGGA
CACTTGCATCCACCTGCAGTGGCTCAGGGTTCCTTCCCTGCTGTCCTCGAGTCTGAGCTG
TGTTCTTCTCAGTTCTGACCAGTCCTCACATCCCAGTGAAGCCTGCCAGCCCCCAGAGAG
TGCTTACTTGATCTTTTGCTAAGTGAGGAAATGACACTGG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Shc1 (ENSMUSG00000042626)
Transcript ID	ENSMUST00000128238

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 262 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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