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Target CDS Information

Gene Symbol (Gene ID) Gmpr (ENSMUSG00000000253)
Cross Reference
EMBL AC154521, AC154817
GO GO:0003920, GO:0005575, GO:0009117, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Gmpr-002
OTTP OTTMUSP00000027401
OTTT OTTMUST00000056910
UCSC uc007qha.1
UniParc UPI00015AA064
Uniprot/SPTREMBL F6VY18
Vega_transcript Gmpr-002, OTTMUST00000056910
Vega_translation 214407, OTTMUSP00000027401
Definition protein_id:ENSMUSP00000120825
translation:
LPAEPKGKGIKELWLGAGKCVEWFKVDLERTFTFRNSKQTYSGIPIIVANMDTVGTFEMA
VVMSQHAMFTAVHKHYSLDDWKCFAETHPECLQHVAVSSGSGQNDLERMSRILEAVPQVK
FICLDVANGYSEHFVEFVKLVRSKFPEHTIMAGNVVTGEMVEELILSGADIIKVGVGPGS
VCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGM
FSGHTECAGEVIERNGQKLKLFYGMSSDTAMKKHAGGVAEYRASEGKTVE

Chromosome 13
Length
Position(start - end)
32,057
45,513,840 - 45,545,898
Orient to Chromosome plus
Link Location : (13:45513840-45545898)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gmpr (ENSMUSG00000000253)
Transcript ID ENSMUST00000128873
Reports
substitution
cSNPs2
Insertion29
Deletion41
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num1
synonymous substitutions 45514418 (p.Thr33Thr),
non-synonymous substitutions 45520906 (p.Ile112Val),
B6 transcript
(ENSMUST00000128873)
LPAEPKGKGIKELWLGAGKCVEWFKVDLERTFTFRNSKQTYSGIPIIVANMDTVGTFEMA
VVMSQHAMFTAVHKHYSLDDWKCFAETHPECLQHVAVSSGSGQNDLERMSRILEAVPQVK
FICLDVANGYSEHFVEFVKLVRSKFPEHTIMAGNVVTGEMVEELILSGADIIKVGVGPGS
VCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGM
FSGHTECAGEVIERNGQKLKLFYGMSSDTAMKKHAGGVAEYRASEGKTVE
MSMv4 transcript
LPAEPKGKGIKELWLGAGKCVEWFKVDLERTFTFRNSKQTYSGIPIIVANMDTVGTFEMA
VVMSQHAMFTAVHKHYSLDDWKCFAETHPECLQHVAVSSGSGQNDLERMSRVLEAVPQVK
FICLDVANGYSEHFVEFVKLVRSKFPEHTIMAGNVVTGEMVEELILSGADIIKVGVGPGS
VCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGM
FSGHTECAGEVIERNGQKLKLFYGMSSDTAMKKHAGGVAEYRASEGKTVE
homology99.66 (290 / 290)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gmpr (ENSMUSG00000000253)
Transcript ID ENSMUST00000128873
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GAAAAGGTAACCATTTGGAGCCGGCTGGTTGAAGGCAGCGATTGTCTGTG
CTCGCAAACCAGGGTGCACGTAGGATTAAAGTTCAAACTTCTCCTAGTCAGTTCATCCTG
GCCACAGAGTCCAGTGAAAGCAATGAGTGATAGAGAGTATTTCAAAAAGGGAATCTATTC
ACATGCAGTGTGCGTGTGTGTCCACACACATGTACTTACCTGTGGGTAGTGTGTGCGCAG
TGTACATATGGAGGTCAGAGGACAACCTTCAGTATGGAGCCTCAGGGTCCTCCTATCTTT
TGTTTGACACAAAGTCTGTTGTTGGCCTGGAACCTCACCAAATTGGTCAGGCTAGCCAGA
CCACTTCCTGCATCCTCACAGCACGGATAAAGATAAAAGGTATGCGTGCGCCTGGCTTTC
CCGTAGTACGTTTTTATGCTTGCAAGGCAAGTTCTTTATTGACAATCTCCTTTACCAAGA
TTCCTCCTGACATGGCTGAGTGATTAGTAATACCAATGAATGTTAGTGGGAGGAACTGGA
CTTGGCCAAGAAAGCTGGAGCCAGGTATATGAGTAGATCCGAAGGGGCCAAGGCTGCCCT
GTAGAAGCTGTCCGAGGGAGAGGGGGTTCGGATCTCTCTTTCCCCTTGGTATCTCACTTG
GTATCTTCCTTTAGTCAAACCCAGGCAGACATGAATTTGAGAAATGGGAGTGGCTGCTCT
GTGATAAGCTCAAGCACAAGACCTTCCTGGGTCACAGGAGTAATTCTGACTCCCCCCAGC
TTCTTGGGGGCACCCAGGCAGCTCTGGCACGTGATTCTGCTAAGCCCACAGTCCTGCCTG
AGCACCTGACTGGATTCCTGACAGCTCACAGTCAAATTCGTGCTCAGGTTGGAGTTCCAG
GAGAGTTGGTGGGCCCTCCCTGCAGCTGTCTGCAAGGCAGAGGAACACACTTGTGTCTCT
GCAGAAACAGACGGCTGCATTGCGCTTCCCCACTGCTCATAGTTACAAAG
1 EXON 1 45,513,840 45,513,914 - 0 75
CTGCCTGCAGAGCCAAAAGGCAAAGGGATTAAGGAGTTGTGGCTCGGTGCTGGGAAATGT
GTAGAGTGGTTCAAG
INTRON 1 - 2 45,513,915 45,514,394 480
GTGAACAGGGAGATGGGAAGGACCT..........GGTGTCCCCCCCCACCCCCCAACAG
2 EXON 2 45,514,395 45,514,514 0 0 120
GTGGATCTTGAGCGAACTTTTACCTTTCGAAACTCGAAGCAAACCTACTCAGGGATTCCC
ATCATTGTGGCCAACATGGACACTGTGGGGACATTTGAGATGGCTGTGGTGATGTCACAG
INTRON 2 - 3 45,514,515 45,516,998 2,484
GTGAGAACTCAACCACTTTTGGGGA..........CTGACAATCTGGTTTTGTTTCCCAG
3 EXON 3 45,516,999 45,517,082 0 0 84
CATGCCATGTTTACAGCCGTTCACAAGCACTACTCCCTGGATGACTGGAAATGTTTTGCG
GAAACCCACCCCGAATGCCTGCAG
INTRON 3 - 4 45,517,083 45,520,851 3,769
GTATGACACGTTTTACAGGACATGG..........TTGTCTGTGCTACACCTTGCCACAG
4 EXON 4 45,520,852 45,521,025 0 0 174
CATGTAGCCGTGAGTTCTGGCAGCGGGCAGAATGATCTTGAGAGGATGAGCCGCGTCTTG
GAAGCTGTGCCTCAGGTGAAGTTCATCTGCCTGGATGTGGCCAATGGGTATTCAGAGCAT
TTTGTGGAATTCGTGAAACTGGTCCGATCCAAATTCCCCGAACACACCATCATG
INTRON 4 - 5 45,521,026 45,529,707 8,682
GTAAGTCTGATGGGATGCTCTCAAG..........GAGAGCCCTGTTCTTCCTGTCGCAG
5 EXON 5 45,529,708 45,529,789 0 1 82
GCAGGGAACGTGGTGACCGGAGAGATGGTGGAAGAGCTCATCCTCTCTGGAGCAGATATC
ATCAAAGTGGGAGTCGGACCAG
INTRON 5 - 6 45,529,790 45,532,293 2,504
GTGAGGCCTGTCAAGAGCACAGCAG..........TGAATCCACCTCTCTTTCCGCACAG
6 EXON 6 45,532,294 45,532,400 1 0 107
GTTCTGTGTGCACCACCCGAACCAAGACAGGAGTGGGCTACCCGCAGCTGAGTGCGGTGA
TAGAGTGTGCTGACTCCGCCCATGGCCTCAAGGGGCACATCATCTCT
INTRON 6 - 7 45,532,401 45,539,024 6,624
GTGAGTATTAGGGTCTGGGAGCCTC..........TATTCTCTCCTTCCTTCCTTTGAAG
7 EXON 7 45,539,025 45,539,067 0 1 43
GATGGAGGCTGCACATGTCCAGGAGATGTCGCCAAAGCCTTTG
INTRON 7 - 8 45,539,068 45,542,478 3,411
GTAAGTACTAGGGACACAGCTCTGC..........CTTCTGTCCACTCGTTGGCATGTAG
8 EXON 8 45,542,479 45,542,638 1 2 160
GAGCTGGTGCAGACTTTGTCATGCTGGGAGGCATGTTTTCAGGCCACACCGAGTGTGCAG
GTGAGGTGATCGAGAGGAACGGGCAGAAGCTGAAACTCTTCTATGGCATGAGCTCAGACA
CAGCCATGAAGAAACACGCAGGAGGCGTCGCCGAGTACAG
INTRON 8 - 9 45,542,639 45,545,872 3,234
GTATGGCTACTGCATGGCTTAGGCT..........TTATTCCTCTCCTTTCCCTCCTCAG
9 EXON 9 45,545,873 45,545,898 2 - 26
GGCCTCCGAGGGCAAGACCGTGGAAG
3' upstream sequence
TGCCTTACAAAGGGGACGTGGAGAACACCATTCTGGATATCCTTGGAGGACTGCGCTCCA
CCTGTACCTACGTCGGGGCTGCCAAGCTCAAAGAGCTCAGCAGAAGAGCCACGTTCATCC
GGGTGACCCAACAGCACAACACGGTGTTTGGTTAACCTCGGGGATGCAGACCTCAGTGTT
GAGCCGAGTGGAAGCCTTCTTTCACCATGCTTCGCCCCTCCCCTCCTTATCTGCCTTGGC
AGGCTGGCTGCTATCACAGATGCTGAGACTGAGTCCTTGTCCTGATCTTGTAGCCCGAGA
CCTTGGGGCTTGCCCTAGTGCCTGTGTGGGGCCCAGGAGCAGGGCGCTCGTGGGGCCCCG
GGTCAGCTCCTAGAACTCATTGCCTCCTGGTGTCAACCAGCCCTTGCACCCTCCTTTCTG
TCCGCCGTTAGTTTTCTTTCTAAAGGGCAATGGTTTCACTTTTAATATAATGCTATGATC
TTGACTGAGTGCTGGAGTTTGCGTGTTCAGGAGCACAATCCTATAGAGCTTCATAAGCAT
TGGGAAAGCCTGCCCAGTCAGGTAAGTGAACTTCAGTGGTTAACACACAAGGCCCTTGGT
TGGGGAGGGAGTGTGGTGTGGGGCTGAGCAAGAGCCTACAAAGCTCACAACCCACCTACT
GCTACCTGCAGCTTTTTGTTGCTGGGAAGCAAAAAAAAAAAAAAAAAAAAATGCAATGAG
CAGGGTCGCAGGCTCTCAGGTCGCAGGGTCAATGGACATGAATTGTCCAACCCTGTTAGC
TTATCTCCCAGCCTGTTCAGAGCTGCTAGCAAGCTCGACCTGTCCTGGGATTTTGTGTAG
TATGTCAGATACAAAGTTGATCTCCAACTTGTCAGGCTGGCTGGCCCTCTCTCTTTTTTA
AAGTCAGGATCTAGCTGTTAGCCCAGGCTGACTTCGAACTTGCAATCCTCCTGCTGCAGC
TCAGCCAGGCTGGCCCCTCTCCAAGTGTTTACAAACCATC..........

Sequence Detail Report

Gene Symbol (Gene ID) Gmpr (ENSMUSG00000000253)
Transcript ID ENSMUST00000128873
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 290 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information