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Target CDS Information

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Cross Reference
EMBL AC115952, AC116695, AC162448, ...show all
GO GO:0003725, GO:0016020, GO:0044822
goslim_goa GO:0003674, GO:0003723, GO:0005575
MGI_trans_name Stau2-006
OTTP OTTMUSP00000044459
OTTT OTTMUST00000082854
RefSeq_peptide_predicted XP_011236690.1
UCSC uc007ajn.2
UniParc UPI00004761C8
Uniprot/SPTREMBL D3Z6D2
Vega_transcript OTTMUST00000082854, Stau2-006
Vega_translation 178771, OTTMUSP00000044459
Definition protein_id:ENSMUSP00000122410
translation:
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKP
FPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQ
NEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFV
TRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGP
DYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKI
AKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVY
QEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAI
GLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

Chromosome 1
Length
Position(start - end)
140,434
16,345,698 - 16,486,133
Orient to Chromosome minus
Link Location : (1:16345698-16486133)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000128957
Reports
substitution
cSNPs2
Insertion86
Deletion100
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 16440376 (p.Lys119Lys), 16463087 (p.Thr74Thr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000128957)
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKP
FPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQ
NEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFV
TRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGP
DYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKI
AKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVY
QEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAI
GLKGSSPTSPCSSVQPSKQLEYLARIQGFQV*
MSMv4 transcript
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKP
FPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQ
NEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFV
TRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGP
DYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKI
AKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVY
QEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAI
GLKGSSPTSPCSSVQPSKQLEYLARIQGFQV*
homology100.00 (512 / 512)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000128957
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTTTTTGGTACGGGCACACAACTTTAATATATTTATTATTCATTTTTTC
CTGATGAATGATGTGGGCCGTAGAGCAGGTGATGGGGGCTCGCTTGCGCTGCTTGCTACC
CTCCTCCCCCTTCTTCCTCCTCCAGTCTAGAAAGGTGCAGGATCCGCCGAATCCTACGTC
GCACCGCAGTGGAACGGACGCGGGATGGTCGCGCGTCCCCAGCTAGGCAGAGGCGGGCAG
TCAGCGAGCCGGGAAAGGTAGGAGCAGAGCGTCGGGGACAGGCTGCTAGAGAGCCCAGGG
GCAGCGGGTGCGGGAGAGGCTGAGCCGCCGGTGCTGGAGCACCTTCGCAGTTGCGGGCCG
GGCGCCCTCAGCGTGCTCCTGCAGCAGCTCCCGGGACGGGCCCCGGCGCGGCCCGAGACC
CCAGGCCTAAGCCCCGCAGCGCCCCGGGATGCGGGGGTCCCAGAAGCCGCCAGGGGGCGG
GAACGGCGCGGCGAACAATGGCCGCTCGACCGCGAAGGGAGGCGGGGAGAGGTGGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGA
GACACAGAGACACAGAGACACAGAGACACAGAGAGAGAGACAGAGACACAGAGAGAGAGA
CAGACAGACAGAGAGACACAGAGAGAGGAGAGAGAGAGACAGAGAAAGAGAGGGGGGAGA
GACACAGAGAGAGAGAGACAGACAGAGAGAGGAGAGAGACAGAGAAAGAAAGGGGAGAGA
GACAGAGAGACAGAGCGAGCTGGAGAGAGAGAGCGCGAGAGAGAGCTGGCGCGGGGGCGC
GCGGCGTGGCGCGGGCGCGGCGGCGCAGGCGGGGGCGCGCGGCGCGGGCCCGGGAGGGCG
CGGCGGGAGCGCAGGGCGGCAGGCGGAGGCGGGGGGCGGGAGCCGAGGAG
1 EXON 1 16,519,173 16,519,247 - - 75
GGAGCAGGCGGCGTCGGCGGAGCTCTGGAGCGCTCGCCCATGTGGAGCCGTCTGCCGGGC
GTCCGTGGCCCGCAG
INTRON 1 - 2 16,509,409 16,519,172 9,764
GTAAATCCTGGTGCGAGCGGCGCCG..........TTATTTCTTTGTTTTCATTTTCCAG
2 EXON 2 16,509,342 16,509,408 - - 67
TTTTGTGGAGCTGTGAGGGATACGGAAGTTTGATCAATATTGTCTTAACATGCTTCAGAT
AAATCAG
INTRON 2 - 3 16,486,151 16,509,341 23,191
GTGAGTATGATTAAGGCGTGTCTTA..........AACTTTACAGCCTTTTTATTTGCAG
3 EXON 3 16,486,020 16,486,150 - 0 131
CTTCTCTCCACGATAAAATGGCAAACCCCAAAGAGAAAACTCCAGTGTGTCTGGTAAATG
AGTTAGCCCGTTTCCATAGCATCCAACCCCAGTATAAGCTTCTGAATGAAAGCGGGCCTG
CTCATTCGAAG
INTRON 3 - 4 16,463,195 16,486,019 22,825
GTAAGGTTACAAAGAGAGGCGGTGA..........GTTTTCTCTATCTGGTCTTTCCAAG
4 EXON 4 16,463,035 16,463,194 0 1 160
ATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGAGCAGTATA
AAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACCCTTCCCAAACCA
GTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAG
INTRON 4 - 5 16,440,459 16,463,034 22,576
GTATGGCATTGGTTTGTTTCCTTCC..........GTGTATCTCTAATGTTTTTAAACAG
5 EXON 5 16,440,323 16,440,458 1 2 136
GTAGTATAACTCCAACTGTGGAACTGAATGGGCTCGCTATGAAAAGGGGAGAGCCTGCCA
TCTACAGGCCACTAGATCCAAAACCATTCCCAAATTATAGAGCTAACTACAACTTCCGGG
GCATGTACAATCAGAG
INTRON 5 - 6 16,394,211 16,440,322 46,112
GTTTGTATGTCTTCTTTGGTTTTGT..........TAATGCTTGTGCTCTCTTTCTATAG
6 EXON 6 16,394,051 16,394,210 2 0 160
GTATCATTGCCCAATGCCCAAGATCTTTTATGTTCAGTTAACTGTAGGAAATAATGAATT
CTTTGGTGAAGGGAAGACTCGACAAGCTGCCAGACACAATGCTGCGATGAAAGCGCTTCA
AGCCCTACAGAATGAGCCAATTCCAGAAAAGTCTCCCCAG
INTRON 6 - 7 16,392,625 16,394,050 1,426
GTGTGGCCCTGATGAGTGCGGCATT..........TTTTTTGCTTTTTGTTTTTACTTAG
7 EXON 7 16,392,517 16,392,624 0 0 108
AATGGTGAATCAGGAAAAGAAATGGATGACGATAAAGATGCAAATAAATCTGAAATAAGC
TTAGTGTTTGAGATTGCGCTGAAGAGAAATATGCCTGTCAGTTTTGAG
INTRON 7 - 8 16,390,034 16,392,516 2,483
GTATGTGTTCCTGTGCTTCTCTTTG..........TTAATATTTTGCTTGCATTTAATAG
8 EXON 8 16,389,821 16,390,033 0 0 213
GTTATTAAAGAAAGTGGACCACCACATATGAAGAGTTTTGTAACTCGGGTGTCAGTGGGA
GAATTTTCTGCAGAAGGAGAGGGAAATAGCAAAAAACTCTCCAAGAAGCGTGCCGCAACC
ACTGTCTTACAGGAGCTTAAAAAACTCCCACCTCTTCCTGTGGTAGAGAAGCCAAAACTA
TTTTTTAAAAAACGCCCTAAAACAATAGTAAAG
INTRON 8 - 9 16,374,812 16,389,820 15,009
GTAAGCATATACTTGTGACTATCCA..........TTCTGACGCTTTTCTTATGTTTTAG
9 EXON 9 16,374,674 16,374,811 0 0 138
GCTGGACCCGACTATGGTCAAGGAATGAACCCCATTAGCCGCCTGGCTCAGATCCAGCAA
GCCAGAAAGGAAAAGGAGCCTGATTACATCCTACTCTCAGAACGAGGAATGCCTCGCCGT
CGAGAGTTCGTAATGCAG
INTRON 9 - 10 16,369,887 16,374,673 4,787
GTATTCTTAATCTTCGTACTAAATG..........TCATGAATTTCTTTAACCTCAATAG
10 EXON 10 16,369,755 16,369,886 0 0 132
GTCAAGGTAGGCAATGAAGTTGCGACTGGAACAGGACCCAATAAAAAGATAGCCAAAAAA
AATGCTGCTGAAGCAATGCTGTTACAGCTTGGCTATAAAGCGTCCACCAGTCTTCAGGAT
CCGCTCGACAAG
INTRON 10 - 11 16,366,140 16,369,754 3,615
GTAAGTGTGGGCCTTAGTGGACATG..........TGTAATAATTGATTTAACCTTTCAG
11 EXON 11 16,366,079 16,366,139 0 1 61
ACAGGTGAAAACAAAGGATGGAGTGGTCCAAAGCCTGGGTTTCCTGAACCAACAAATAAC
A
INTRON 11 - 12 16,346,012 16,366,078 20,067
GTAAGTTACTATTTTGTGTGTGTGT..........CAGTGTACCTTTATTTTATTCATAG
12 EXON 12 16,343,486 16,346,011 1 - 2,526
CTCCAAAAGGAATTCTTCATCTTTCTCCTGATGTTTATCAAGAGATGGAAGCTAGCCGCC
ACAGAGTGACCTCTGGCACAACTCTAAGCTACTTATCTCCCAAAGATATGAACCAACCTT
CAAGCTCTTTCTTCAGTGTGTCTCCCTCATCAACTAGTTCAGCCACAGTTGCCAGGGAAC
TCCTTATGAATGGAACATCTCCTACTGCTGAAGCCATAGGTTTAAAAGGAAGTTCTCCTA
CTTCCCCTTGTTCTTCAGTACAGCCTTCAAAACAACTGGAATATTTAGCAAGGATTCAAG
GCTTTCAGGTATGATTTTAAAGAAAAAAACAAAAAGAGAAAATAAAACTCATTAGCCCCA
AATCCTTCATTTCTGTCCACCAGAAGGCTCATTCTTGCCTGCTAATGTGGCCTCCATGCC
ATTAACATTGTAAGTTATTTAGAAACACAAAAGACAGAAAAAAAGAGATTCATAGCACAT
GTCTTATTTTCTGTCACTACTGTCCAGGAACTCTGTTGCTGCCTGGCTTTCTGCCATATT
GATATTCACATCTGTACTCTCTGTCTCTCTCTTTCTCCCTCCCTCTCCCTCTCTTTCTTC
CCCTCCCTCTTCCTTTCCAATCCTGTCTACCTTCCTTTCTTCCCCTCCCTTCTCCCTCAT
GTCTCCATCCTTGCCTTCCTCCTGGGTCCTGTCTTTCAGTTGGTCTTGATTGGCACATCC
ATCTTCTCATTTTGTTTTGCACAACCAAGATTCTCCCAGGAGACATTTGGTGTTAGTGTT
TACATCACTTCCCCTTTTTACAGTCACGGTTGAGTCTTTCTGCTGTTGATTTGATTTTAT
AGCAGTTTTGAATTTCCCATCCTGCAGTTAGTAATGACACAGGTACATTTATAAGGTCCA
GCACCCTTGAAGTCTGTTACCTTAGGGGGCATTAAACATGGCACTGAGCAGTAGTGGAAC
ACTTTGTGGATGTTGGAGGTATAATGAGTATCTGTTGTACTGGATCGTGTGCTGGGCCAG
GGTGGAGAAGCATCTACCGCCACTGATACAGCAGCTGTCTCATGATGATCTCAGAGCAGC
ACACAGCTGTCATGAGTGTAGATTTGGGAATGGAGCTTCTTTCCCACTTATTCTTGTTCC
CTTTGGGGGGAAATACCCCATGAAACCAACAGGAGAGATTTTAAAGGAATTGTTAATTGT
GGGAAGGGAAGTTTATGTGTGCCGACTCCTAGTTGCCTTGAAAGCCAAGTACTGAAGCAT
AACTGTCAACCGACGGGATGAAACTGCAGCTTGCGTGTGCACAGGACACTCTGGCTCCCC
ACATTTCACTGCTTCACCTTCCATCTTAGTCTTCCTTCTTAAGACCAAACTCTGTAATTT
CTTGTAGAAATGTTCTAGATCTGTATTATGTAGAAGATATCATGTATTATAAATGTTTCA
TGGCATCAGTTATACAATGAGAAAGAAGATGATGTGTTGGGAGTATTTTGCATGTTTGGT
TTGGTTTTTCTACTTCACAGATCCCTTCTGATTCTTTCAATTCTATTGCCAGGTAGTCGC
TAGTGTTTCTAATCACACGATTGATTTAATTAATACGATGCTGAAGAAGCTGTACTAATT
ATTGACTCTGTCATCGGAAATTTAAATGATTAATTTCAAGTTATAATTTCAGAATTTGTT
ATTTACCTTAAGAATTACAATAAATCACTGTTTAAACAAAAGACTTTGATTCATATAGTG
AAAGCACTAGACTAATACTTAGTTCTACCAATAATCTGCATAGTATAAATTAAAATAAAC
TGTGATGAAAAGTGACCCACTGCTCATTTATAAATGTCTGCAAGTGATGGCTCGGCTCTG
TGCACGCAGTACATGTTGCACTCTGGCTTTTGGCTGAGTTTTGAAGTTTCTGAGTTCCTT
ATGCATTAGTCCTCGGCCATGACAGCAGCTATAATCTTATCCTATCTTCACTTTAACCGA
ATTAGAGTCTACTACCCCTATTGCTGGGCTCGCTGCTTACACCTATCTCAAAAGCTTGCT
CTGTGGTAATATTCTCTTCCTCATGGACAAGGTAAACATCTCCAGATCTGTGACAGTGGT
GGTTACACATTGCTGTGCTGTGTCACTGGAGTGAGCGGGTGCTGCTCGTGGACCACAGCC
TGCAGCCGCAAGGCAGTCTCTGGAGAGTGGCCTCTGGTCTGCGATGAGTGCACACATCAT
CATGTCACCCTAGATGGTTCTTGTGATAAGAGTTTTAAAGTGTATTTCTTTCTTGGTAAT
TTTCTCAGGTAGGAAAATATACGGATTTTTTTTTTGTTTGTTTCTTACATGATTTAATTA
GACTGTAGCTAGAAAGTGGAAGACCAGCTTGTTAGAAATTATATGCTCTTCTGTTACTTT
TATTTCTGGAATTTGAAAACAATAAATTCATTTTCTTTGTAGGTCAGTAGCTTTTCATCT
CATTCCACATTGAACAGTTGTCATTCCTACTGAATGTGTAGGCTCTGCTTAGGCCTTCCA
TTGCCC
3' upstream sequence
ACTGTGGTATGATTTAAGCCTAACTAAGCTACTGCGCTCTCTTGTAGTGCCAAATTAAGT
CAGATGAGTCTGTGGAAAAAGAAGTTGCTGTAACTTAATTTTATTTTCATTTCCCAGTCT
TTAATTGAAATTTACAAATGACAAAAAGGTAATTTGCTCAGGCACATGTAGGTATTAAGT
TCACTTTCTTCTGTATAAACCTACAAAATAAAATTATTACACAGTGAGTTCTCTTAACAA
AACTGATTTCATAAATCAGAGTGTGACTGACACCCACTCCTAATCATCCTTTCATTCTCA
GGAATTCCCATTGAAGGTTTTTACAAAGAGTGTATGTGTGTGTATGTATATGTGTATGTG
TGTGAGAGTGTATGTGTGTATGTATATGTGTATGTGTGTGAGAGTGTATGTGTGTGTATG
TATATGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTATATGTGTATGTGTGTGAGAG
TGTATGTGTGTGTATGTATATGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTATATG
TGTATGTGTGTGAGAGTGTATGTGTGTATGTATATGTGTATGAGTGTATGTGTGTGAGAG
TGTATGTGTGTGTATGTATATCTGTATGTGTGTGAGTGTATGTGTGTATGTATATGTGTA
TGAGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTATGTCTGTATGTGTGTGAGAGTG
TATGTGTGTATGTATATGTGTATGAGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTA
TGTCTGTATGTGTGTGAGAGTGTATGTGTGTATGTATATGTGTATTGTGTGAGAGTGAAT
GTGTGTATATGTGTATGTGTGTGAGAGAGAGAGCATATGTATGTGTGTGTGAGTGTGTGT
GCGTGCGCGTGTTTGTGCAGATGCTCTTGGAGGCCAAAGGCATCAGATCCTCTGGAACTG
GATCACAGGTGTGTACTGTTTCTTTTAGAAACAATGTCTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000128957
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 512 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information