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Target CDS Information

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Cross Reference
EMBL AC115952, AC116695, AC162448, ...show all
GO GO:0003725, GO:0016020, GO:0044822
goslim_goa GO:0003674, GO:0003723, GO:0005575
MGI_trans_name Stau2-015
OTTP OTTMUSP00000047066
OTTT OTTMUST00000086843
UCSC uc007ajq.2
UniParc UPI0001DD36E6
Uniprot/SPTREMBL E2QRQ3
Vega_transcript OTTMUST00000086843, Stau2-015
Vega_translation 178763, OTTMUSP00000047066
Definition protein_id:ENSMUSP00000121410
translation:
MFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTV
ELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFF
GEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALK
RNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPL
PVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRR
EFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPK
PGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSS
TSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

Chromosome 1
Length
Position(start - end)
117,495
16,345,698 - 16,463,194
Orient to Chromosome minus
Link Location : (1:16345698-16463194)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000131257
Reports
substitution
cSNPs2
Insertion86
Deletion100
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 16440376 (p.Lys81Lys), 16463087 (p.Thr36Thr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000131257)
MFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTV
ELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFF
GEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALK
RNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPL
PVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRR
EFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPK
PGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSS
TSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV*
MSMv4 transcript
MFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTV
ELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFF
GEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALK
RNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPL
PVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRR
EFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPK
PGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSS
TSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV*
homology100.00 (474 / 474)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000131257
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GAGTGTGGTCTGCTGGAAGGAATTAGCTTCCCCGGGAGGCATTTTCTGAC
AGCTTTTTTTTTTACATTTTTTCATAATCTGTTCATTGAGTGAAGAGAGAATAGATTGAA
GGCAGAGCGAACGAACTTGTGGAAAGAACAGCCATGGAAGGCTTGTTTCCCTGATGTGAA
GGGCCTGTAGTCGTTTGTATCACTGAACACCTGAATGAGGCCTAAGTAGCTAGAAACCAT
TAATTAAGGGGTGGTCCCCATTTAAGAAGGAATCCACATATTTGAGAAAACTAGTGGAAG
TGAAAAGTGAGAAAGGCACACGGGAAACATGAGAGACAAACGAAGAGCTTGCCTACACTG
TATCACCGGAAACTACCATGTCAGGCTCTAGCTAGAGAGCTTTACAGGTATCTCGCCTAT
ACATACAGTATCACGTTTTTGTCTCTTTAAAAATTGTAAATCAGTGTATAAGGTAATAGA
TCCACAAATACTGCCTCATTTGTAGAGTTGGTTTTAAAATATGACTGAAATCACAGGGCT
CACAGACATATCCCAGGCAGACAAGCCATACCAAGGAAACCCCAGGAAGAATAATGCCAG
TCAGAATACACTAATAGTTCTATTTCTAGACTTCTTTTTCATATGATTTTTGGTGCCACT
TATTTAAAATCCATTGGTCTTAACTAGGCTGACGTTATCTGGCCATACCTAACCCATATC
TAAACCAGGACAAAAGAACAAGTAATTTGAGTTTTTTAGCACTCTTCAAAAACCAAGGAT
CTAGGACAGTGTTTTAAGACGATCCTCATTTTTGGCTCTAAAGATTTTTTTTTTTTTGGT
ACGGGCACACAACTTTAATATATTTATTATTCATTTTTTCCTGATGAATGATGTGGGCCG
TAGAGCAGGTGATGGGGGCTCGCTTGCGCTGCTTGCTACCCTCCTCCCCCTTCTTCCTCC
TCCAGTCTAGAAAGGTGCAGGATCCGCCGAATCCTACGTCGCACCGCAGT
1 EXON 1 16,520,001 16,520,067 - - 67
GGAACGGACGCGGGATGGTCGCGCGTCCCCAGCTAGGCAGAGGCGGGCAGTCAGCGAGCC
GGGAAAG
INTRON 1 - 2 16,463,195 16,520,000 56,806
GTAGGAGCAGAGCGTCGGGGACAGG..........GTTTTCTCTATCTGGTCTTTCCAAG
2 EXON 2 16,463,035 16,463,194 - 1 160
ATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGAGCAGTATA
AAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACCCTTCCCAAACCA
GTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAG
INTRON 2 - 3 16,440,459 16,463,034 22,576
GTATGGCATTGGTTTGTTTCCTTCC..........GTGTATCTCTAATGTTTTTAAACAG
3 EXON 3 16,440,323 16,440,458 1 2 136
GTAGTATAACTCCAACTGTGGAACTGAATGGGCTCGCTATGAAAAGGGGAGAGCCTGCCA
TCTACAGGCCACTAGATCCAAAACCATTCCCAAATTATAGAGCTAACTACAACTTCCGGG
GCATGTACAATCAGAG
INTRON 3 - 4 16,394,211 16,440,322 46,112
GTTTGTATGTCTTCTTTGGTTTTGT..........TAATGCTTGTGCTCTCTTTCTATAG
4 EXON 4 16,394,051 16,394,210 2 0 160
GTATCATTGCCCAATGCCCAAGATCTTTTATGTTCAGTTAACTGTAGGAAATAATGAATT
CTTTGGTGAAGGGAAGACTCGACAAGCTGCCAGACACAATGCTGCGATGAAAGCGCTTCA
AGCCCTACAGAATGAGCCAATTCCAGAAAAGTCTCCCCAG
INTRON 4 - 5 16,392,625 16,394,050 1,426
GTGTGGCCCTGATGAGTGCGGCATT..........TTTTTTGCTTTTTGTTTTTACTTAG
5 EXON 5 16,392,517 16,392,624 0 0 108
AATGGTGAATCAGGAAAAGAAATGGATGACGATAAAGATGCAAATAAATCTGAAATAAGC
TTAGTGTTTGAGATTGCGCTGAAGAGAAATATGCCTGTCAGTTTTGAG
INTRON 5 - 6 16,390,034 16,392,516 2,483
GTATGTGTTCCTGTGCTTCTCTTTG..........TTAATATTTTGCTTGCATTTAATAG
6 EXON 6 16,389,821 16,390,033 0 0 213
GTTATTAAAGAAAGTGGACCACCACATATGAAGAGTTTTGTAACTCGGGTGTCAGTGGGA
GAATTTTCTGCAGAAGGAGAGGGAAATAGCAAAAAACTCTCCAAGAAGCGTGCCGCAACC
ACTGTCTTACAGGAGCTTAAAAAACTCCCACCTCTTCCTGTGGTAGAGAAGCCAAAACTA
TTTTTTAAAAAACGCCCTAAAACAATAGTAAAG
INTRON 6 - 7 16,374,812 16,389,820 15,009
GTAAGCATATACTTGTGACTATCCA..........TTCTGACGCTTTTCTTATGTTTTAG
7 EXON 7 16,374,674 16,374,811 0 0 138
GCTGGACCCGACTATGGTCAAGGAATGAACCCCATTAGCCGCCTGGCTCAGATCCAGCAA
GCCAGAAAGGAAAAGGAGCCTGATTACATCCTACTCTCAGAACGAGGAATGCCTCGCCGT
CGAGAGTTCGTAATGCAG
INTRON 7 - 8 16,369,887 16,374,673 4,787
GTATTCTTAATCTTCGTACTAAATG..........TCATGAATTTCTTTAACCTCAATAG
8 EXON 8 16,369,755 16,369,886 0 0 132
GTCAAGGTAGGCAATGAAGTTGCGACTGGAACAGGACCCAATAAAAAGATAGCCAAAAAA
AATGCTGCTGAAGCAATGCTGTTACAGCTTGGCTATAAAGCGTCCACCAGTCTTCAGGAT
CCGCTCGACAAG
INTRON 8 - 9 16,366,140 16,369,754 3,615
GTAAGTGTGGGCCTTAGTGGACATG..........TGTAATAATTGATTTAACCTTTCAG
9 EXON 9 16,366,079 16,366,139 0 1 61
ACAGGTGAAAACAAAGGATGGAGTGGTCCAAAGCCTGGGTTTCCTGAACCAACAAATAAC
A
INTRON 9 - 10 16,346,012 16,366,078 20,067
GTAAGTTACTATTTTGTGTGTGTGT..........CAGTGTACCTTTATTTTATTCATAG
10 EXON 10 16,343,571 16,346,011 1 - 2,441
CTCCAAAAGGAATTCTTCATCTTTCTCCTGATGTTTATCAAGAGATGGAAGCTAGCCGCC
ACAGAGTGACCTCTGGCACAACTCTAAGCTACTTATCTCCCAAAGATATGAACCAACCTT
CAAGCTCTTTCTTCAGTGTGTCTCCCTCATCAACTAGTTCAGCCACAGTTGCCAGGGAAC
TCCTTATGAATGGAACATCTCCTACTGCTGAAGCCATAGGTTTAAAAGGAAGTTCTCCTA
CTTCCCCTTGTTCTTCAGTACAGCCTTCAAAACAACTGGAATATTTAGCAAGGATTCAAG
GCTTTCAGGTATGATTTTAAAGAAAAAAACAAAAAGAGAAAATAAAACTCATTAGCCCCA
AATCCTTCATTTCTGTCCACCAGAAGGCTCATTCTTGCCTGCTAATGTGGCCTCCATGCC
ATTAACATTGTAAGTTATTTAGAAACACAAAAGACAGAAAAAAAGAGATTCATAGCACAT
GTCTTATTTTCTGTCACTACTGTCCAGGAACTCTGTTGCTGCCTGGCTTTCTGCCATATT
GATATTCACATCTGTACTCTCTGTCTCTCTCTTTCTCCCTCCCTCTCCCTCTCTTTCTTC
CCCTCCCTCTTCCTTTCCAATCCTGTCTACCTTCCTTTCTTCCCCTCCCTTCTCCCTCAT
GTCTCCATCCTTGCCTTCCTCCTGGGTCCTGTCTTTCAGTTGGTCTTGATTGGCACATCC
ATCTTCTCATTTTGTTTTGCACAACCAAGATTCTCCCAGGAGACATTTGGTGTTAGTGTT
TACATCACTTCCCCTTTTTACAGTCACGGTTGAGTCTTTCTGCTGTTGATTTGATTTTAT
AGCAGTTTTGAATTTCCCATCCTGCAGTTAGTAATGACACAGGTACATTTATAAGGTCCA
GCACCCTTGAAGTCTGTTACCTTAGGGGGCATTAAACATGGCACTGAGCAGTAGTGGAAC
ACTTTGTGGATGTTGGAGGTATAATGAGTATCTGTTGTACTGGATCGTGTGCTGGGCCAG
GGTGGAGAAGCATCTACCGCCACTGATACAGCAGCTGTCTCATGATGATCTCAGAGCAGC
ACACAGCTGTCATGAGTGTAGATTTGGGAATGGAGCTTCTTTCCCACTTATTCTTGTTCC
CTTTGGGGGGAAATACCCCATGAAACCAACAGGAGAGATTTTAAAGGAATTGTTAATTGT
GGGAAGGGAAGTTTATGTGTGCCGACTCCTAGTTGCCTTGAAAGCCAAGTACTGAAGCAT
AACTGTCAACCGACGGGATGAAACTGCAGCTTGCGTGTGCACAGGACACTCTGGCTCCCC
ACATTTCACTGCTTCACCTTCCATCTTAGTCTTCCTTCTTAAGACCAAACTCTGTAATTT
CTTGTAGAAATGTTCTAGATCTGTATTATGTAGAAGATATCATGTATTATAAATGTTTCA
TGGCATCAGTTATACAATGAGAAAGAAGATGATGTGTTGGGAGTATTTTGCATGTTTGGT
TTGGTTTTTCTACTTCACAGATCCCTTCTGATTCTTTCAATTCTATTGCCAGGTAGTCGC
TAGTGTTTCTAATCACACGATTGATTTAATTAATACGATGCTGAAGAAGCTGTACTAATT
ATTGACTCTGTCATCGGAAATTTAAATGATTAATTTCAAGTTATAATTTCAGAATTTGTT
ATTTACCTTAAGAATTACAATAAATCACTGTTTAAACAAAAGACTTTGATTCATATAGTG
AAAGCACTAGACTAATACTTAGTTCTACCAATAATCTGCATAGTATAAATTAAAATAAAC
TGTGATGAAAAGTGACCCACTGCTCATTTATAAATGTCTGCAAGTGATGGCTCGGCTCTG
TGCACGCAGTACATGTTGCACTCTGGCTTTTGGCTGAGTTTTGAAGTTTCTGAGTTCCTT
ATGCATTAGTCCTCGGCCATGACAGCAGCTATAATCTTATCCTATCTTCACTTTAACCGA
ATTAGAGTCTACTACCCCTATTGCTGGGCTCGCTGCTTACACCTATCTCAAAAGCTTGCT
CTGTGGTAATATTCTCTTCCTCATGGACAAGGTAAACATCTCCAGATCTGTGACAGTGGT
GGTTACACATTGCTGTGCTGTGTCACTGGAGTGAGCGGGTGCTGCTCGTGGACCACAGCC
TGCAGCCGCAAGGCAGTCTCTGGAGAGTGGCCTCTGGTCTGCGATGAGTGCACACATCAT
CATGTCACCCTAGATGGTTCTTGTGATAAGAGTTTTAAAGTGTATTTCTTTCTTGGTAAT
TTTCTCAGGTAGGAAAATATACGGATTTTTTTTTTGTTTGTTTCTTACATGATTTAATTA
GACTGTAGCTAGAAAGTGGAAGACCAGCTTGTTAGAAATTATATGCTCTTCTGTTACTTT
TATTTCTGGAATTTGAAAACAATAAATTCATTTTCTTTGTA
3' upstream sequence
GGTCAGTAGCTTTTCATCTCATTCCACATTGAACAGTTGTCATTCCTACTGAATGTGTAG
GCTCTGCTTAGGCCTTCCATTGCCCACTGTGGTATGATTTAAGCCTAACTAAGCTACTGC
GCTCTCTTGTAGTGCCAAATTAAGTCAGATGAGTCTGTGGAAAAAGAAGTTGCTGTAACT
TAATTTTATTTTCATTTCCCAGTCTTTAATTGAAATTTACAAATGACAAAAAGGTAATTT
GCTCAGGCACATGTAGGTATTAAGTTCACTTTCTTCTGTATAAACCTACAAAATAAAATT
ATTACACAGTGAGTTCTCTTAACAAAACTGATTTCATAAATCAGAGTGTGACTGACACCC
ACTCCTAATCATCCTTTCATTCTCAGGAATTCCCATTGAAGGTTTTTACAAAGAGTGTAT
GTGTGTGTATGTATATGTGTATGTGTGTGAGAGTGTATGTGTGTATGTATATGTGTATGT
GTGTGAGAGTGTATGTGTGTGTATGTATATGTGTATGTGTGTGAGAGTGTATGTGTGTGT
ATGTATATGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTATATGTGTATGTGTGTGA
GAGTGTATGTGTGTGTATGTATATGTGTATGTGTGTGAGAGTGTATGTGTGTATGTATAT
GTGTATGAGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTATATCTGTATGTGTGTGA
GTGTATGTGTGTATGTATATGTGTATGAGTGTATGTGTGTGAGAGTGTATGTGTGTGTAT
GTATGTCTGTATGTGTGTGAGAGTGTATGTGTGTATGTATATGTGTATGAGTGTATGTGT
GTGAGAGTGTATGTGTGTGTATGTATGTCTGTATGTGTGTGAGAGTGTATGTGTGTATGT
ATATGTGTATTGTGTGAGAGTGAATGTGTGTATATGTGTATGTGTGTGAGAGAGAGAGCA
TATGTATGTGTGTGTGAGTGTGTGTGCGTGCGCGTGTTTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000131257
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 474 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information