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Target CDS Information

Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Cross Reference
EMBL AC140415, AC154505, AC164878, ...show all
GO GO:0003779, GO:0008157, GO:0008599, ...show all
goslim_goa GO:0003674, GO:0007010, GO:0008092, ...show all
MGI_trans_name Phactr1-005
OTTP OTTMUSP00000033850
OTTT OTTMUST00000065152
RefSeq_mRNA NM_001302636.1
RefSeq_peptide NP_001289565
UCSC uc007qfr.1
UniParc UPI0000214DA4
Uniprot/SPTREMBL B1B1B8
Vega_transcript OTTMUST00000065152, Phactr1-005
Vega_translation 214392, OTTMUSP00000033850
Definition protein_id:ENSMUSP00000123346
translation:
MRSDSLVPGTHTPPIRRRSKFANLGRIFKPWKWRKKKSEKFKHTSAALERKISMRQSREE
LIKRGVLKEIYDKDGELSISNEDDSLENGQSLSSSQLSLPALSEMEPVPMPRDPCSYEVL
QASDIMDGPVSEESPSASESGVLLSQDPSAKPVLFLPPKKSAAFPGDHEETPVKQLSLHK
QPPALPPKPTARIANHLTDPGAPVKLPCLPVKLSPPLPPKKVLICMPVGGPELTLASYAA
QKSSQQAVAQHHHTVLPSQMQHQLQYGSHGQHLPSSTGTLPMHPSGCRMIDELNKTLAMT
MQRLESSEQRVPCSTSYHSSGLHSSDGITKAGPMGLPEIRQVPTVVIECDDNKENVPHEP
DYEDSPCLYGREEEEEEEDEDDDASLYTSSLAMKVCRKDSLAIKLSNRPSKRELEEKNIL
PRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQEEKREIKRRLTRK
LSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKST
EMEVHELSRHLTRFHRP

Chromosome 13
Length
Position(start - end)
178,545
42,956,643 - 43,135,189
Orient to Chromosome plus
Link Location : (13:42956643-43135189)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Transcript ID ENSMUST00000131942
Reports
substitution
cSNPs2
Insertion189
Deletion241
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 42956756 (p.Ser38Ser), 43096669 (p.Val395Val),
non-synonymous substitutions
B6 transcript
(ENSMUST00000131942)
MRSDSLVPGTHTPPIRRRSKFANLGRIFKPWKWRKKKSEKFKHTSAALERKISMRQSREE
LIKRGVLKEIYDKDGELSISNEDDSLENGQSLSSSQLSLPALSEMEPVPMPRDPCSYEVL
QASDIMDGPVSEESPSASESGVLLSQDPSAKPVLFLPPKKSAAFPGDHEETPVKQLSLHK
QPPALPPKPTARIANHLTDPGAPVKLPCLPVKLSPPLPPKKVLICMPVGGPELTLASYAA
QKSSQQAVAQHHHTVLPSQMQHQLQYGSHGQHLPSSTGTLPMHPSGCRMIDELNKTLAMT
MQRLESSEQRVPCSTSYHSSGLHSSDGITKAGPMGLPEIRQVPTVVIECDDNKENVPHEP
DYEDSPCLYGREEEEEEEDEDDDASLYTSSLAMKVCRKDSLAIKLSNRPSKRELEEKNIL
PRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQEEKREIKRRLTRK
LSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKST
EMEVHELSRHLTRFHRP*
MSMv4 transcript
MRSDSLVPGTHTPPIRRRSKFANLGRIFKPWKWRKKKSEKFKHTSAALERKISMRQSREE
LIKRGVLKEIYDKDGELSISNEDDSLENGQSLSSSQLSLPALSEMEPVPMPRDPCSYEVL
QASDIMDGPVSEESPSASESGVLLSQDPSAKPVLFLPPKKSAAFPGDHEETPVKQLSLHK
QPPALPPKPTARIANHLTDPGAPVKLPCLPVKLSPPLPPKKVLICMPVGGPELTLASYAA
QKSSQQAVAQHHHTVLPSQMQHQLQYGSHGQHLPSSTGTLPMHPSGCRMIDELNKTLAMT
MQRLESSEQRVPCSTSYHSSGLHSSDGITKAGPMGLPEIRQVPTVVIECDDNKENVPHEP
DYEDSPCLYGREEEEEEEDEDDDASLYTSSLAMKVCRKDSLAIKLSNRPSKRELEEKNIL
PRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQEEKREIKRRLTRK
LSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKST
EMEVHELSRHLTRFHRP*
homology100.00 (558 / 558)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Transcript ID ENSMUST00000131942
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTCCCTTGGGAGACGTGGATGGAGGGTCAAGGAGGGGAATTCAGAGACT
GCAGTTACCGACTATTCCCAAAGAAAAGCGAGGATCCTTTTCAAGTCCAGCCCAGAGCTT
GCAGCAGGCAAGGCCCAGCTAACCTGGGAGCCTGGAGGGACCAGAGCCCACCCCTGCATA
AAAATCATCTTGGCATCTTGTGAACTAGACCAACAGGCTGGGGTTTTGTAAATCTGGTCA
TTTTGCAAAGAGCCTCGCTACATTCTCAGACATTTCTCAGTGGCCCCTGGGCATTATTCA
GCAAGACAAGGCATATGTAAATCAGGTAAACTGGAACAGAATGGAATGGGGTGAAAGGTT
AAGGTTTCACTTTCCATATCAAGCTTGGAGCTTTTCCTTGGCCACCATATGTCTTTGAAG
TGGTTGGGGAAGGGTGTAGACAGATCAGGTTAGGGGTGATGGAGGGTGGGAGGTGGCTGA
AGACCCCTCAAGTCCAACTACCTTTTGACTCCTAGAATTAAGTGATGTGGCAACAGTAAC
AAACACTACAGCCTTTAGAATTTGCGCATGTGTTATAAAGCTATATGAGACTTTTCAACT
CTGGGTTCAGACACTTATCTGAAACCGTTCAGTCCTTAATCTCAAGAAAGCTACCGTCGT
TACACCCTGAGAAATCTCTTCTTGAACAGCATTTAAGGGGTTCTGTGCCCATGGCCGAAA
AGGCTGTCCCCAAACGAAAATTCCGGAAAAGGTTAATTGTCAGAGTCTGATGTTTTGAGT
ATCTTTGAGGATGTAGATGATGCGTGGGGGTTTGGGCTGGGGACCTAAGGTGAGGGAGCG
TTGCTGTTGGATCAGTTTAATTATACAATGGAGCCAGGAGAGTCGGGTGATGGGATTGCT
AATTCCTTTTAGAAGGAACAAACTGCATATTAAAAAGCTCAACAAATATTCAAAAAAAAA
GGAGGAAAAAAAAAAAAAAAACCAGCAGCTCAGGCGGTGACTGAGAGTTC
1 EXON 1 42,866,247 42,866,487 - - 241
CAGACTTCTCTATGGTTGAGTCCTTGGGATCCTCCCAAGCTGAGCCTGTGGAGCTGAGCT
GCGGGGCGGCTGAGTCTCAAGACTCCCAGAGCTTGGGGCTGGTCAAGTGCAGGTCCAGGG
TCTGGGTTGGATCCCCAGGCTACTTTCTGTTTCACTTCGAGATGTTCCTTGCTTCCCAAA
CCGGTGGCCTCCCAATTCCAGTGAAAGGCTGGACTCCTTGGAGACCTCCCGCTCTGTGAA
G
INTRON 1 - 2 42,866,488 42,956,616 90,129
GTAAGAGGTCACCGCGGCTAGCCTC..........CCATCACTTTCTTGGGAAAAACAAG
2 EXON 2 42,956,617 42,956,781 - 1 165
CCGAGGAAGTGGAGAGGCTGGCAGCCATGCGTTCCGACTCGCTGGTCCCAGGTACGCACA
CCCCGCCCATCCGGAGGAGGAGTAAGTTTGCCAACCTGGGGAGGATTTTCAAACCCTGGA
AATGGAGGAAGAAGAAAAGCGAAAAGTTCAAGCACACGTCAGCAG
INTRON 2 - 3 42,956,782 43,037,449 80,668
GTAAGGTGGCTGCTGGCCTTGTTTC..........CTCTCTCTCTGGCTCTTGCTTGCAG
3 EXON 3 43,037,450 43,037,530 1 1 81
CTCTGGAAAGGAAGATTTCGATGAGGCAGAGCAGAGAGGAGCTGATCAAGAGAGGGGTCT
TGAAGGAGATCTACGATAAAG
INTRON 3 - 4 43,037,531 43,057,178 19,648
GTAAGGGGCTGTCTGCTGGCCACAG..........TACTACCATCTCTTCCTTCCCACAG
4 EXON 4 43,057,179 43,057,346 1 1 168
ATGGAGAACTCTCTATATCAAATGAAGATGACTCCCTGGAGAACGGACAGTCCCTGAGCT
CCAGCCAACTCTCTTTGCCTGCTCTGTCGGAAATGGAGCCTGTCCCAATGCCCAGGGACC
CATGCTCATATGAGGTGCTCCAAGCTTCAGACATTATGGATGGACCAG
INTRON 4 - 5 43,057,347 43,059,570 2,224
GTAATGACATGGCACAGGCCTGGGG..........GTGTATCATGTGGTTGTCCCCTCAG
5 EXON 5 43,059,571 43,059,777 1 1 207
TGTCTGAAGAGAGTCCCTCTGCCAGTGAGTCTGGAGTCCTCCTGTCCCAAGATCCTTCAG
CCAAACCAGTTCTGTTCCTGCCCCCCAAAAAATCTGCTGCTTTCCCTGGAGACCATGAGG
AGACCCCAGTGAAACAGTTGTCCCTTCACAAGCAGCCCCCGGCCCTGCCTCCCAAACCCA
CTGCCCGGATTGCCAACCACTTAACAG
INTRON 5 - 6 43,059,778 43,077,654 17,877
GTAAGTCCAACATCTTCCGAGGCGC..........CTTCTCAACCCTCCTTCTGCCGCAG
6 EXON 6 43,077,655 43,077,976 1 2 322
ATCCTGGCGCCCCTGTGAAATTGCCTTGTCTGCCAGTGAAACTGTCGCCTCCGCTACCTC
CAAAGAAAGTCCTGATCTGTATGCCTGTAGGGGGGCCAGAGCTCACTCTGGCATCCTATG
CAGCCCAGAAGAGCAGCCAGCAGGCCGTGGCCCAGCACCACCACACCGTCCTACCATCCC
AGATGCAGCACCAGCTGCAGTATGGCAGTCACGGCCAGCATCTCCCATCCTCCACCGGCA
CCTTGCCCATGCACCCCTCAGGCTGCAGGATGATCGACGAGCTGAACAAGACACTCGCCA
TGACGATGCAGAGGCTGGAAAG
INTRON 6 - 7 43,077,977 43,094,748 16,772
GTAACGGGGGGGGCGGGGGCTTGCT..........TCCCCTTTCTTTTCTTTTCATGCAG
7 EXON 7 43,094,749 43,094,996 2 1 248
CTCCGAGCAACGAGTCCCCTGTTCCACGTCTTACCACAGTTCTGGTTTGCACTCAAGCGA
CGGCATCACAAAAGCAGGACCCATGGGCCTTCCGGAAATAAGACAAGTGCCAACTGTTGT
GATTGAATGTGATGACAATAAGGAAAATGTGCCTCATGAACCCGACTATGAAGACTCGCC
CTGCCTGTATGGCCGGGAGGAGGAGGAAGAGGAGGAAGATGAAGATGATGACGCCTCTTT
GTACACCA
INTRON 7 - 8 43,094,997 43,096,649 1,653
GTACGTGCAGGCAGGCTGTCCGTGA..........ACTGACTGATTTCTCCCTCCTCCAG
8 EXON 8 43,096,650 43,096,806 1 2 157
GCTCACTGGCCATGAAGGTCTGCAGGAAGGACTCCTTAGCCATCAAACTCAGCAACAGGC
CCTCTAAGCGAGAGCTAGAAGAAAAGAACATCCTCCCCAGACAGACGGATGAGGAACGGC
TGGAGCTCAGACAGCAGATTGGCACCAAGCTCACCAG
INTRON 8 - 9 43,096,807 43,122,998 26,192
GTAAGAAAGCAGCAGCCCCGCCCGT..........AACTTTTCTTGGATTTTTTCCGTAG
9 EXON 9 43,122,999 43,123,054 2 1 56
GCGGCTGAGCCAGAGACCAACTGCAGAGGAACTGGAACAGAGGAACATTTTGAAGC
INTRON 9 - 10 43,123,055 43,128,137 5,083
GTAAGTCGGTGAAGCCCAGGGTGAC..........AGAGGTATCTTCCATTTATTTTCAG
10 EXON 10 43,128,138 43,128,199 1 0 62
CTCGGAATGAACAAGAAGAACAGGAGGAGAAGCGGGAAATCAAGAGGAGGCTGACTCGCA
AG
INTRON 10 - 11 43,128,200 43,132,919 4,720
GTAAGGCGGTCCCCCTTCCCCGGAG..........GCCCCACTTTTTCCCCTCCCTGCAG
11 EXON 11 43,132,920 43,133,060 0 0 141
CTCAGCCAAAGGCCCACAGTGGAAGAACTCCGGGAGAGGAAGATCCTTATCCGCTTCAGT
GACTACGTGGAAGTGGCAGATGCCCAAGACTATGACCGAAGGGCAGACAAGCCATGGACC
CGCCTCACCGCTGCAGACAAA
INTRON 11 - 12 43,133,061 43,133,926 866
GTAAGCAGAGGCCAGGAGAAAGGGA..........TGACCAGCTGCTATTATTCTTCCAG
12 EXON 12 43,133,927 43,134,003 0 2 77
GCTGCCATTCGGAAGGAACTCAATGAGTTTAAAAGTACCGAGATGGAAGTCCACGAGTTA
AGTAGACACTTAACCAG
INTRON 12 - 13 43,134,004 43,135,173 1,170
GTTAGTTCTGACGATGTCTGGCTCC..........CTTGACAACATTTCTTGTTCCCCAG
13 EXON 13 43,135,174 43,135,304 2 - 131
GTTTCATCGACCTTAACAGTGGGATTACTCTTGAGTGCTCTGCTGTCTTCAAAACATAAA
TTTCTAAGAACCATAAGTGCTGGCGTCTGTCCACTTCCCCGTTACCATGTAAATCCGAAC
TGCCTTTTTTT
3' upstream sequence
AAAAAAGAGCGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGGAAGGAAAAAGGAAGAAGAAAGGAAAGGAAACACAGCCAGGATTCTGTG
TGCAGGAACACCATGGTGAGCACTCCTCAGCATTGCTGGCACCATTTCTGCTACAGAAAG
GTGACCCGGCCCCCCGAGACAGGGACCTACCTGAGGATTGTCCAGAAACCACCTTGTCCC
CTCCATCCAGACCCAGCAAGCACCACATTGGTTCAGTCTTCGGTGAATCCCTTCCTCACA
AGGGACTGTTGCCTGAGTCCAAAGAAGCCCAGGGCTTGACATGGGAATGGCTAGGGTGAC
AGTCATAATCCAACTGCCCTTCTAGACGTGGTCAGACACATGGGCTCCAGATGGGGCATC
TGCTTTGGGGGCCCTTGGGAAGGGGGTGACGACCTCTCAGTCTCCTCCACACATACACAG
GCACACCCACGCACGAACATGTGCACACACAAACACACATGCTTTCTTTTCAGATTTGTC
CTGGAGGAGCCTGTGTTGGCACTTCAGTCATACCCATGTGTGCTGTGGGCATAGGAGGCT
AAACCTGAGCGTCCACTTTGACCCCCATCCCAAACTGAACTGCCTTCCAGAAGACTCTGG
TAAGGATAGTAGACATCTGCTCAGTTCACATTCATTGACCAGTTTGTGTTCACAAAGCCC
AGGGCTATGGGTGATCTAATGCTTTAATGCCCTTGCCAAGGTTCCCTGTGATATTCATGA
GTGTGAACTGACCAGGGAGCCATCAACCCCATGGGCCACAGTTTTCTTTGACCCTGTAGC
ACACCTGGGCCAGTGGTGATGTGGCTTGGTAGTTGATAGCTTCTGAGTACCAGTGTATGG
AGGCCAGTGCAGGGGACCAATGTCCCACTGTCATTCCAGAGCCTTCCACTCTTCTGTCTT
TGCAACTGAAGAGTTTCTGCAGAGAGATGCACATCTCAGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Transcript ID ENSMUST00000131942
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 558 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information