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Target CDS Information

Gene Symbol (Gene ID) Sncb (ENSMUSG00000034891)
Cross Reference
CCDS CCDS36670.1
EMBL AF348162, AF348163, AF348164, ...show all
GO GO:0005509, GO:0005654, GO:0005737, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Sncb-004
OTTP OTTMUSP00000043435
OTTT OTTMUST00000081258
protein_id AAH19409.1, AAK83238.1
RefSeq_peptide_predicted XP_006517078.1, XP_006517079.1
UCSC uc007qpc.1
UniParc UPI00000298C2
Uniprot/SWISSPROT Q91ZZ3
Vega_transcript OTTMUST00000081258, Sncb-004
Vega_translation 214523, OTTMUSP00000043435
Definition protein_id:ENSMUSP00000116296
translation:
MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTSGVVQGVASVAEKTKE
QASHLGGAVFSGAGNIAAATGLVKKEEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYED
SPQEEYQEYEPEA

Chromosome 13
Length
Position(start - end)
6,173
54,759,509 - 54,765,683
Orient to Chromosome minus
Link Location : (13:54759509-54765683)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Sncb (ENSMUSG00000034891)
Transcript ID ENSMUST00000134110
Reports
substitution
cSNPs0
Insertion5
Deletion4
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000134110)
MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTSGVVQGVASVAEKTKE
QASHLGGAVFSGAGNIAAATGLVKKEEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYED
SPQEEYQEYEPEA*
MSMv4 transcript
MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTSGVVQGVASVAEKTKE
QASHLGGAVFSGAGNIAAATGLVKKEEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYED
SPQEEYQEYEPEA*
homology100.00 (134 / 134)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Sncb (ENSMUSG00000034891)
Transcript ID ENSMUST00000134110
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCAGCATTTCTCTGTCTTCCTAACTACTCTCACAGGCTGAAGTAACCCTG
TATGATTCAAGTGTGGATACATTGATTTTGTTTCCTGCCTCTTGTCTCTGCACAGCCATG
AGCGCGTCTTCCTGAGATACGAACCCTGCTTTTCTTTAGCACTGTTTCCACCCAACCTGC
ACCACCCATCCAAGCGGTGCCTAGAAGGGCATTGACTCCCTCCATTGGTTCTACAGAAGA
GGAACCTGGCGTTTCAAAAGGTGAGGTAGGTAGTTCAAGATCCCGCAGCTACTAACAAAC
GCAGCTAGGATTGGAATCGCTCTGAACTTCCAAGCCAACCGCATAATTTCTACACCAGTC
CTCTCTCGCCGCATTGCCACCTCCCACCATCCTCAAAGACTACTCTTCTCCAACACTAGG
GTCCCCGGCTGCACGTCAGAGGCCCTCCCCTGGAGGCTCGCCTGCTCTGGGGAGATGTCA
CCCTCCCCGCCCCCTGTCAGTCAGGCGGAGGGGGCGGCGCGGCCACCAGGGGGGAGTGCT
GAGCTCAGAGCTGCCGCAGCGCCGGAGCAGGAGCCGGAGCGGAGCCGGAGCGTGCGAGTA
GCATCCTTGGTGGCAGAGCACCCAAGGCCAGAGCACTGCTGCGCTCCAGCTCAGGAAAGG
TGACTCAAGAGCCTGACCACGGCAGGACCCCACTGGCCCCGAGTCCATCCATACCCAGCG
TAGCCCAGCCCCGCGCATCTGCTCGCAGTAGCAGCCGCTGCCGCCACCACAGCTCCATCC
CCCAGCCCGGCCCCGAAACCCAGGTGAGGCTCCGGAAAGAGCACCGAACTGGGGATCCAG
GGGGATCTGGGGTAAGATGAGGAGCGGGATGGAGACTGTCCTGGGAGAAACGTGGGCACA
GAAAAGGAAAGCGCTAAGCGGGCGCGGGCAGGTGCACTGCAGGATGCGCGTCTGTCCGCT
CTGATTGCTACAGTCTGGGTGGACGTGCGGACGTGCGTCCGTGCCCGTGT
1 EXON 1 54,765,915 54,766,097 - - 183
GCCGGAGTGTCCATGCGCTTCTAAACGCCCCGTGTTCTGTGTGTGTGCACGTGAGCATGT
CCATGGTGTGTGTTTGTATGCAGACCGTGTGACTGTTGTGTGTACAGACAGGCCCCGGTG
TTCGCGCCGAGCCTAGCTTCCGGTTCTGCGGGCCTGCAGGTTGCAGATCTCCGGATAACT
GAG
INTRON 1 - 2 54,765,693 54,765,914 222
GTGCTGGCCCCTCCCCGCATCCCGG..........GCACTTGTGTGTTCGCCCTCCCCAG
2 EXON 2 54,765,563 54,765,692 - 1 130
GCCGCCAGGATGGACGTGTTCATGAAGGGCCTGTCCATGGCCAAGGAGGGCGTTGTGGCT
GCAGCTGAGAAAACCAAGCAGGGGGTCACCGAGGCAGCAGAGAAGACCAAGGAAGGCGTC
CTCTATGTCG
INTRON 2 - 3 54,762,961 54,765,562 2,602
GTGGGCAAGGGGCTGCAGGGCTGGG..........ATATGTTCTTCTTTCTTCTCCATAG
3 EXON 3 54,762,922 54,762,960 1 1 39
GAAGCAAGACCAGTGGAGTGGTACAAGGTGTAGCCTCAG
INTRON 3 - 4 54,762,762 54,762,921 160
GTACCAGACCAGTACTAATGCTTTA..........TTCCTCAAACTCCTCCCTGCTCCAG
4 EXON 4 54,762,643 54,762,761 1 0 119
TGGCTGAGAAAACCAAGGAGCAGGCATCGCATCTGGGAGGAGCTGTGTTCTCTGGGGCTG
GGAACATTGCAGCAGCCACGGGCCTGGTGAAAAAGGAAGAGTTCCCCACAGACCTGAAG
INTRON 4 - 5 54,759,958 54,762,642 2,685
GCAAGTGCCTACCCCCACCCCCATG..........CAGCCCTGCCTTTCTCTGTTCACAG
5 EXON 5 54,759,868 54,759,957 0 0 90
CCAGAGGAGGTGGCCCAAGAAGCCGCTGAGGAGCCCCTGATTGAGCCTCTGATGGAACCA
GAAGGGGAAAGTTATGAGGACTCACCCCAG
INTRON 5 - 6 54,759,542 54,759,867 326
GTGAGGGGGCTGCAGGGCTGGGGTA..........GTCTCCAACCCTTCCTTTGATGCAG
6 EXON 6 54,759,381 54,759,541 0 - 161
GAGGAATACCAGGAATACGAGCCAGAGGCGTAAGGGGTCCAGGAGGGCCTCGCACCAGCA
GCACAATTCCTTCTGTCCCTGTCCCTGTCCCTGCCCCATCCCTCTCCCTCCCAACCCCCC
ACCCCCACCCCCCAGAGCCAGGGCTGTCCTTCTACCTTTTC
3' upstream sequence
CCCCAAACACGAGATCTTCCTTCGGCTCTGAGGCACTTCCTCAGGGCCTGTGTTAGTGTC
TGCCCTGCCCTTCCGTCTGTCCTACTTGCCCGCGTTCATCCCTGAGGCGTGGACTGGAGT
CGGGCAGAGAGGTCCGGCTGGGAGCCCCGCCCTACCAGTGTTGCCCCTCACCCTCCGTTT
GGTCCAGTGTCTGCTCGGATGTAGCATGTTCTATGTATTTTTAAACCAAGATGGGAAAAC
TATGGCTCCTTCCCCATCCTAACAGAGGTTCTTCAATGGGCTCCCCCCCCCCCGCAGCCC
CAATTCGACCCCTAAAATGTTTTGTTTTGTTTTGTTTTTTAACCCAAACCAGGAGCCAGG
TCGTGCCATGCCCCCTCCCTCAGCCCGCTCGGTCCGAGCGCGGGCGTCGTTTGTTGTGAT
TGTGGCATGGAGAGTCCCCCCACCCACCGTGTGAGCGTGTCCCGGGGTGGGCGGCCAAGC
CGCTCCCCAGTGTGTCCATGAATAAAGCCAATCTGTCTGTAGCTGGCGCCGCCTAGGCAG
GACTGGGCTTCTGGGCCCCAGACTGCCCCTTCGTTCCTTGAACTCTGACACACTAAACCC
AGGTACAAGGCTAGCTACCTGGGATCTCAGCTTCTCCATCTCCACACTGGCCCAGGACCC
AGAGGGTGACAGCCCCCACCACCACCCACACTGAGATTGAAGTTGACTGGGAGGTGGGAA
GTTAGCATCAGGCGCCACCTCCTGGCAGGAAAGGGAGTGCAGGACCAGAAGAAGAAACGA
CAGCACCGACATCACGAATACGCATGCACGCGCGAGAACCGGCGCCAGTCTCTACGCGCG
AGCTCGCATGTCAGCACCAAGGCCAGAGCGCACTTGCAGACCTGCGCACTTTGGCCCGCT
TGCAGACGCGCCGCAGAAAAACGTCCTAAACCGTTGTCAGACCCCTCCCACTCCAGTCCT
GTCCACACTCATTTACTCACACCCGCCCAACACAAACAAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Sncb (ENSMUSG00000034891)
Transcript ID ENSMUST00000134110
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 134 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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