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Target CDS Information

Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Cross Reference
EMBL AC117789, AC122026, AC132381, ...show all
GO GO:0003690, GO:0003700, GO:0005634, ...show all
goslim_goa GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name Aff3-004
OTTP OTTMUSP00000040347
OTTT OTTMUST00000076584
UniParc UPI000164C5AD
Uniprot/SPTREMBL D6RHR2
Vega_transcript Aff3-004, OTTMUST00000076584
Vega_translation 179073, OTTMUSP00000040347
Definition protein_id:ENSMUSP00000116289
translation:
MNRTGMRYGGKSEKEEVKKHSRTVAALTPVTRSSANPTRRTRGMNSPTGSRIH

Chromosome 1
Length
Position(start - end)
1,262
38,535,678 - 38,536,941
Orient to Chromosome minus
Link Location : (1:38535678-38536941)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Transcript ID ENSMUST00000134963
Reports
substitution
cSNPs0
Insertion89
Deletion84
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000134963)
MNRTGMRYGGKSEKEEVKKHSRTVAALTPVTRSSANPTRRTRGMNSPTGSRIH*
MSMv4 transcript
MNRTGMRYGGKSEKEEVKKHSRTVAALTPVTRSSANPTRRTRGMNSPTGSRIH*
homology100.00 (54 / 54)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Transcript ID ENSMUST00000134963
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TAATCCAAGCAAGAGGGAGGTGAAGATGGAAAACTTTGGAGCAACCTGGC
TAGCTAGACTAACCTAAGCCCCAGCTCAACCAGAGACCTTGCTTCAGTGTGGAAAGTAGA
GAGAACACTTGAGGAAGACAGCTGACATTAGCCTCTGACGTCAGCCTCTGATCTCCACAT
GTGTGATGGTTTGACTATGCTTGGCCTAGCAAGAGGCACTATTAGGTGGTGTGGCCTTGC
TGTAGTAGGTGTGGGTGTGGCCTTGTGGGAATGGGTCTGGCTTTGATGGAGTGAGTGTGG
CCTTGTTGGAGGAAGTGCCACTGTGGGGGGTGGGCTTTGAGACCCTCCTCTCCTAGCTGC
CAGAAAGACAGTTTGCTCTTGGCTTTCTTTGGATGAAGATATAGAACTCTCAGCAGTTCC
TGCACCCTGCCTGCCTGGATGCTGCCAACCTTCCTGCCATGATGATAATGGACTGAACCT
CTGAATTGTAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGAGTTACCTTGGTCATTGT
GTCTGTTGACAGAAATGTATGTGCCTGACCTCCACGTAAATGCACAGGCACCTATATATA
CACATGCATGTACACACACAAACACACACACACACACACACACACACACATACAGAGGAG
GAAAAAAAGGATGCTAAATAGCCTACTAAGATCAGTACCTGGTAAGAGTATAAGGGATTC
TAGAATGTTCCAGGATATTTTTTCAACATTCCTTTTAGGGTTAGGTGGGAGTGAAAAAGA
CCTTTGCCCCTGGCCACCATGACTGTGTATCTCAATCTATGTTCTTGTCAGGAGATCTCT
CAAGCTGTGTGTCCAGGCTCTGTTACCAGTCTGCCCTGGGGCGGGTAGGAGCAGGGGGCT
GGGTGTCTGCCGTAGTCCGTCGCCTCCACACTTTCACATCCTCTATCAACACCTGCACAC
TTGGGTGGTGACCACACAAGCTCTTCCTGTTTGTGCAGAAAGTGCCATTC
1 EXON 1 38,664,858 38,664,955 - - 98
AGAACGCTTGCCAGCGAGGAGGAATCCGTACACAGAAGAGAGAAGCCGAACAATTTATTT
GGAACAGGAAAAAAATAAAACCAAGAGTGTGTTGAGAG
INTRON 1 - 2 38,536,947 38,664,857 127,911
GTAAGTGGGTCTGTGTCTCGGTACT..........TTCTCTTTCCTTTCTCCTGGTGCAG
2 EXON 2 38,536,826 38,536,946 - 2 121
TGTCTATGAACCGGACAGGAATGCGTTACGGAGGAAAGAGCGAGAAAGAAGAAGTCAAGA
AACACAGCAGGACAGTGGCAGCTTTAACTCCGGTTACTCGCTCTTCAGCGAACCCTACAA
G
INTRON 2 - 3 38,535,724 38,536,825 1,102
GTAGATGGTTTTCAGCTGTTCACCT..........TCCTTGGATATTTTTCTTTCTCCAG
3 EXON 3 38,535,411 38,535,723 2 - 313
ACGAACAAGGGGGATGAACTCTCCAACCGGATCCAGAATACATTAGGAAATTATGATGAG
ATGAAAGACTTTTTAACTGATAGATCCAACCAGAGTCATCTTGTTGGCGTCCCCAAGCCA
GGTGTCCCTCAGACTCCCGTGAACAAGATAGATGAACATTTTGGGGCAGAGTCGAGAGCC
CAGCCCCAGCCCTCATCCGTCTGCAGCACTGCGTCCTCTACACCTGCAGCTGTCCCTGTG
CAGCAGGGCAAGAGAGGTGCCATGGGCTGGCAGAAGGCTGGTCACCCACCGTCCGATGGC
CAACAGAGAGCAG
INTRON 3 - 4 38,535,292 38,535,410 119
GTAAGGAGGGGCATGAGGCAGTTGC..........TCACTGCCTTCTTCTTCCAACTCAG
4 EXON 4 38,535,159 38,535,291 - - 133
CGCAACAGGGCTCTCTCAGGACCTTGCTTGGAGATGGTGTTGGCAGACAGCAGACAAGGG
CCAAGCAAGTGTGCAATATGGAGGCGGGGCTTCAGACCCAGGAGAGGCCACCTGCAATGG
CAGCCAAGCACGG
3' upstream sequence
CAGCAGTGGACACTGTGTTCAGAACTTTCCCCCATCCCTGGCTTCAAAACCCAGCCTGGT
GCAGCAGAAACCAACTGCCTACGTGCGGCCAATGGATGGCCAGGACCAAGCTCCTGACGA
ATCTCCTAAGCTGAAGTCATCCACAGAAACTGCTGTGCACTGCACAGCCTACAGAGGGGT
CCCGGCCAACAAACCAGAGTCAGCCCGAGCCAAGGCCAAGCTTGCCAAGTTCAGCATCCC
CAAGCAGGCAGAGGTGAGTTCATTGTCATTGCCTGACTTGAAAATGCAAGTCTTATGTTT
CTGCCCCTCCCACCTCCCCAGCGATGTGGTTAGATTCATAGCCCGCAAATAGAAGTTGTA
AATTTTGATATTTTCAAATTCATTATAATAGGGTTGTCTTATACTGAAATGCATATATAT
ATGTTTGTGGTTGTGTAGGAATTACTTAGCGATGGAATGCCTCCTTCAGTTGAGGTCATG
GGATTTCATGAACAAGATGGCTTTGACTAAGGTATAAAGCAGCAATATAAGACACTTCAA
AGGCCGTATGGACTTCACTTTCAAGGAGGCAAAATATTTCCATAAAATAATTCAGAACTC
TGAACGTTTTAATCAAATTTGAAAAGTTTTATGATAAACTTCTTAATGGAATTTGAATTT
GTACAGTGTATAAGTAAGAATTTGTCAAGTATTAAATCAATATTAAGTCTGGTCAACATT
CCCATATATTAGGTGTCCCACCCACTCTATAAAGCTTATGATTCCAAGTCATTCCTATTC
ACCAGAGTCCTTACTTGGGCGCTTGTGTTAGGCCGTGTAGACGTATTCTCAGAAGGAAGT
ACTTCAGTTCATATGCCCCTGCTTTGCGCTTTGATTTTGTTCTACCACATTTGTGCATTG
CATTACAGAATGGAGTGGATAGTGTTGAGAATCCACATTTGCACATTGCATTACAGAATG
TGTGGAGTGGATACATTGAGTGTTGAGAATCCCCCACAAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Transcript ID ENSMUST00000134963
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 54 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information