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Target CDS Information

Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Cross Reference
GO GO:0000288, GO:0003723, GO:0003730, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0003729, ...show all
MGI_trans_name Auh-006
OTTP OTTMUSP00000032442
OTTT OTTMUST00000065173
UCSC uc007qnd.1
UniParc UPI0001611552
Uniprot/SPTREMBL F6RT60
Vega_transcript Auh-006, OTTMUST00000065173
Vega_translation 214471, OTTMUSP00000032442
Definition codon_start:2
protein_id:ENSMUSP00000121852
translation:
XKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFV
SKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGG
GGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREF
LPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQVIHHLVHLCGRILHSEKKGGAVK

Chromosome 13
Length
Position(start - end)
83,137
52,836,094 - 52,919,232
Orient to Chromosome minus
Link Location : (13:52836094-52919232)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000137064
Reports
substitution
cSNPs7
Insertion46
Deletion79
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num1
synonymous substitutions 52836163 (p.Val216Val), 52838131 (p.Val200Val), 52840952 (p.His157His), 52841003 (p.Ser140Ser), 52889161 (p.Asp81Asp), 52889185 (p.Pro73Pro),
non-synonymous substitutions 52836107 (p.Gly235Val),
B6 transcript
(ENSMUST00000137064)
KNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVS
KIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGG
GTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFL
PQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQVIHHLVHLCGRILHSEKKGGAVK*
MSMv4 transcript
KNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVS
KIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGG
GTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFL
PQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQVIHHLVHLCGRILHSEKKGVAVK*
homology99.58 (239 / 239)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000137064
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCCTCAGGCCCTGCAAGCTTGTCTCCACCCCGAGGGGCATCTGGACTCTG
GACGTGTGCATCTTGCTTTGATTTAAGTCAGGAACAGATAAGGCCCACACCCAGTGCTGG
AGAGGGCATTTCTGACTCCCAATGGACGTGTGTGCTTAGGGGGAAGGTCGAGTGCAGGTG
GATAGACCCGCAGAGCTAAGAGTTAAGGCCACTGAATTTGGGTATTTTGCAAATAAGGGA
TTTTACATAAGTGGTGAATCCTGTGCTCGGACCTGCTGCAGCTGGGGTGGCCAGCTTGGT
TTAGATGAGTGTTCAACAAGACAGGGAGTGAGCAGGGAGAGCCCGGGTCTCAGGGGAAAG
AAAATGAATTTCATTTTATTTGGGCCGAGTCCTCATTGCCTGTAGATCTGACTAGAAGTG
TTGATGGGCAGAGGTCAGGAGGAAGCCTGGCATAGAAGTACTAAGACTGGTTCATCAGCA
AGGAGCAAGGAGCTACCTGCAGCTGCAACAGTGCCAGAAAGCAGGACAGAGGCCTGCGTG
CACCCAGGCCCTGCTGAGCCGAGCCAGGAGCCAGGGGCAGGTGGGAGAGTGGCTGTCACC
AGAAGGACAATGGTGAATGAAGGCGGATCTGCCCGGCTCTCCTGCGGGCTCCCTGGTCTT
CTCAGAGATTCAAACCTGGAAAACATTGCAGAGGCCTTTGAACTGAAGGACCCATGACGC
TGGCATTCTCCCCTTAAAGTGCAGCGAGAATATTAAGCACCAGTTTAACCTGATAAGTCC
TTAGCTACCATATTAAAGAAATAGAAGTACTAGCTTTGAAAAGGAAGCTATAACTGAAAA
TAAAGTCCCGTCTTTGCCTTGGCTAGGAGGGCAGATCAGCTAGGTGCCATGTCCATCATT
CATCCCCACTCTGCAGTCTGCTTTCTGAGCGCCCCACTAACCCAAGCCTGTGTCCTTCTT
CTCCCTCCCTAACCAGGCATTGTGGTGCTCGGGATTAACAGAGCTTATGG
1 EXON 1 52,919,199 52,919,232 - 0 34
GAAAAATGCACTCAGTAAAAATCTCCTCAAGATG
INTRON 1 - 2 52,919,089 52,919,198 110
GTGAGTGGAAGACTACGCTGTTTGC..........CCCCCTCCCCCCTATCTTGGTTTAG
2 EXON 2 52,919,001 52,919,088 0 1 88
TTATCAAAAGCGGTGGATGCATTAAAGTCAGATAAGAAAGTTCGGACCATTATCATCAGA
AGTGAAGTCCCTGGGATATTCTGTGCTG
INTRON 2 - 3 52,898,737 52,919,000 20,264
GTAGGTAAAATAATCTCCTGTTGTC..........CTCATCTGAATACGATGTCTTGTAG
3 EXON 3 52,898,650 52,898,736 1 1 87
GTGCTGACCTTAAGGAACGAGCCAAGATGCATTCCAGTGAAGTTGGTCCCTTTGTCTCCA
AGATCCGATCGGTGATCAATGACATTG
INTRON 3 - 4 52,889,196 52,898,649 9,454
GTAAGCACAGCTATGCTGAGGGTGG..........AGGAGATAAACTTTGTCTGTTTCAG
4 EXON 4 52,889,103 52,889,195 1 1 93
CAAACCTCCCCGTGCCCACCATCGCAGCCATAGATGGCCTTGCCCTCGGAGGGGGTCTGG
AGCTGGCTCTAGCGTGTGACATTCGAGTAGCAG
INTRON 4 - 5 52,887,298 52,889,102 1,805
GTGAGAATTTAATCCTGTTAACATA..........CTTAATTCTCTTTATTTCTTTTTAG
5 EXON 5 52,887,241 52,887,297 1 1 57
CTTCCTCTGCAAAAATGGGCCTGGTTGAAACAAAGTTGGCAATTATTCCTGGCGGAG
INTRON 5 - 6 52,841,065 52,887,240 46,176
GTATGAATTGCTCACTCTTCGTCTC..........CTGTCTTTCTCCTCTCCCCCTTCAG
6 EXON 6 52,840,877 52,841,064 1 0 188
GAGGGACACAGAGATTACCACGTGCCATCGGGATGTCCCTGGCTAAGGAACTCATCTTCT
CCGCCCGAGTTCTTGACGGTCAAGAAGCCAAAGCTGTGGGCTTGATCAGCCACGTGTTAG
AACAGAACCAGGAAGGGGATGCAGCCTACAGGAAGGCGCTGGACCTGGCGAGAGAGTTTC
TACCTCAG
INTRON 6 - 7 52,839,609 52,840,876 1,268
GTACTGTGAGAGCACCTGTGTGTGT..........CTTTCTTCTTTACTTTGAATTTCAG
7 EXON 7 52,839,558 52,839,608 0 0 51
GGGCCTGTTGCAATGAGAGTGGCCAAACTAGCAATTAACCAAGGGATGGAG
INTRON 7 - 8 52,838,134 52,839,557 1,424
GTGAGTGCTGATGGGGAAGGTGGCT..........GAAATGAACTATGTTTTCTCCTCAG
8 EXON 8 52,838,086 52,838,133 0 0 48
GTTGACTTAGTAACAGGGTTAGCCATAGAAGAAGCCTGCTATGCTCAG
INTRON 8 - 9 52,836,166 52,838,085 1,920
GTATGTAACATGGTGACAGATCCAG..........TAAATAAAAAGAGGTCCTTGTATAG
9 EXON 9 52,835,987 52,836,165 0 - 179
GTAATACACCACCTGGTACATCTGTGTGGTAGAATATTGCACAGCGAGAAGAAGGGGGTA
GCTGTCAAGTAACAAAATGGCACAAAGCAACCTTGAACTCACAGTGCTCCAGGGAAGGTT
TCAGTCTGAAAGTACTGGCTACTGAGTGACTCCCGACGCCCAGTGACATTCTGGAAGAG
INTRON 9 - 10 52,835,552 52,835,986 435
GTGTTTGGCAGGTTGGGGATGAGTA..........GTGTGTGTCATGTTTTGTCTCTTAG
10 EXON 10 52,835,119 52,835,551 - - 433
ACCATCTCAACAAAGGACAGACTGGAAGGTCTTCTTGCTTTTAAGGAGAAAAGACCTCCT
CGCTACAAGGGAGAATAGGAGGAGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTT
CAGAGCCGCCCCGTGCCGCCACGGGAAATCGCAGTGACCAAAGTGGAGAGTGGGTTCTCA
CTACACCCGGAGCAGGCCCATCTGTACTCAAGCCACTGTGCGCCATGTCATATTTATTCA
GATTTATAAAGCTAGCAATGTCCGTGGTCAAAACACGTAAAAATTAGGTGTATGTTTTTA
ATATTTCCCGCATATCAGGCTTTGTCGTTAATTTTTTAATGTGAATAATTTATATTGCAC
ACTCTAGGGAATAATTGATTGTATGTCTACCATGCTGCATTAAGAAAATAAAACTATTTC
TGTATCCCAAAAA
3' upstream sequence
TGTGAAGTTATACCAAATGTAGTTGCTGAGTAATTATGTACATGCGAGCATACACATGTG
TGTACATAGGAACACACACGTGTGCATGCACAAACACACACACACACATGTGCTACGAGC
GTACAAATGCCCATCACCACCAGAGGACCTGGGTGGACAGTCTGAGGGAAACCCCTCTAG
TTTCAATAAAGCCAATGGAGAGTGATTTGAGAATCCGTGTCTTGCCCCTTGCCCAACATT
TCAGAACAGATTTCAGAGTAAAGTCTCTTTGCTGACCCTGCCGAGGAACCATGTGACACG
GTCCCAGAACAGGGGTGAAGGGTCAGCCCATCAGTGGTTCTGCTTGGCTTCAAGCCACAG
TGTCTTCGGCAGAGGTGTCCCGGGCTGGGCCTGGCTGTGCTTTCACAGAGCTTGATGCTT
GCTGAAGACTGCAGTGGGCCTCCTGTCCCGCCACACACATGCATCCTGCATTCCCTTCCC
TCCCACCACACACATGCATCCTGCATGCCCCTCCCTGCTGCCCTGCCCTCACATCCTCAC
CCTGAGCCTGCTCTGCTGTTTGGGAGTGCACTGATGTGATTCTTAAATTTCTCAAGAGAG
AACAATGGCACCAGCCACCACCTCTGCCACTGAGCTGCAGATCAGAACGTCTATCCGTCT
ATCTGCTAGCCCAGCTAACCAGCTGACCCCCCCCCACCCCCACCATCTGATGTCAGACTG
CCACACCCTTGATCTTCAGCCTGAAACCTTGGCCAGGGGGGTGACTGTCCTTCAGACTTC
CCAGGGTCATGTCTTGTCTGTCCACGACACGCTGAACATCTCACATTTATTCTAACTGAG
CTGGAAATGGTACTGGTAATGGGAGAAGATGAGGATTTGGGGACCAGGTCAGCAGTTGAT
GATTGGTCACCACTTGGTTTCCTAACAAGTTGTGAAGCGGAGAGCAAAGTCCTATAGCAA
CTTGAGACAGGGAGGCAGCAGGATCAGGTGCTGGTCCTTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000137064
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 239 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information