top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Cross Reference
CCDS CCDS48219.1
Clone_based_vega_transcript AC103635.1-002
EMBL AC102654, AC103635, AC110029, ...show all
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name A830018L16Rik-002
OTTP OTTMUSP00000046229
OTTT OTTMUST00000085550
protein_id AAI37904.1
RefSeq_mRNA NM_001160369.2
RefSeq_peptide NP_001153841
UCSC uc011wij.1
UniParc UPI00017479C4
Uniprot/SPTREMBL B2RQF6
Vega_transcript AC103635.1-002, OTTMUST00000085550
Vega_translation 178716, OTTMUSP00000046229
Definition protein_id:ENSMUSP00000117421
translation:
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGSLKMEPKTKGLKQQ
QQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLENLDDLRMEGVTTLVLSG
SKFNQGRPTHPAEPQAKVTLNICSRCARLQGDNLMERTEDTLQILHTPDEIIPDSLDSLP
GTEETLMEEGEDFEKTSNLTEPGEASSGAHSLKSYMEEDESLKQLQVVHQPWLLPSDTES
EGIEAEQDKRSADLLCVPCSSCPTLIYSGLSVKPAKEVASGP

Chromosome 1
Length
Position(start - end)
560,396
11,414,569 - 11,974,966
Orient to Chromosome plus
Link Location : (1:11414569-11974966)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000137824
Reports
substitution
cSNPs3
Insertion266
Deletion368
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 11518591 (p.Thr77Thr), 11588451 (p.Ala195Ala), 11588532 (p.Ser222Ser),
non-synonymous substitutions
B6 transcript
(ENSMUST00000137824)
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGSLKMEPKTKGLKQQ
QQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLENLDDLRMEGVTTLVLSG
SKFNQGRPTHPAEPQAKVTLNICSRCARLQGDNLMERTEDTLQILHTPDEIIPDSLDSLP
GTEETLMEEGEDFEKTSNLTEPGEASSGAHSLKSYMEEDESLKQLQVVHQPWLLPSDTES
EGIEAEQDKRSADLLCVPCSSCPTLIYSGLSVKPAKEVASGP*
MSMv4 transcript
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGSLKMEPKTKGLKQQ
QQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLENLDDLRMEGVTTLVLSG
SKFNQGRPTHPAEPQAKVTLNICSRCARLQGDNLMERTEDTLQILHTPDEIIPDSLDSLP
GTEETLMEEGEDFEKTSNLTEPGEASSGAHSLKSYMEEDESLKQLQVVHQPWLLPSDTES
EGIEAEQDKRSADLLCVPCSSCPTLIYSGLSVKPAKEVASGP*
homology100.00 (463 / 463)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000137824
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCAGATCTTAACCTTGAAAAGTCGTCTCATAGTAAGAAGGTATGAGGTAA
AGTTGATGTGCTTCTGAAGTATCTGGAGGAATAACTGTTGGGTGGGAGCTCAGAGCCCCT
GAGCTGTAGCCAGAGGTGTAGCAGACAGAGCTGAAGGTGTAGGCAAACTTGGAAGCAGAG
AGAGCTGGCTTGCTTTTGTTTCATCTCCCTGCCAAATGCCTAAGGGTTGCTTCCAGCCTT
TGGGTGTCTGTACTTCGGGAATTTTCAATCAGTTCTCAGGCAGCAACGCCGGTTGTGGCT
GACTTGCTCAAGGCCAAGATAGATATATCTGTTCCTTTCTTTTTTCTTTTTAACATAAGC
AACTTTGTTTTCGCGGCAAAACCCACCCATAGTTCTCATCTCCGGCTTTTTCTCATCCCA
GGCTAGTGAAGGCAGAGCGCTGGGCCAGGAGAAGATCAAGCTGAGTGGTTTGGAACTGCG
GGTGTAGCTGCCAAGGAGTAGCCAACAAGCACCAGATTTATGTGCACTTTGAAAGAAGCA
CCTTTACCATTGGCTTTTTGAGCGGCTCTGTCGCTAGGGAGCGAGCACCGCCTCGGGGAG
CAGCTTGGGTGCTGGTTCCTGGCAGCCAGGAGCTGGGCGCACACCCTGGCGCGCTCTGGG
CGGTTCCGCGCGCTGTCGCCCCTGCGGCCCGCGCGGTCCCCCGCTCGGCTCGCGGAGGCG
CTGCACAGACACTCGCCTTCGGCCACCGGCTCCTGCTGCTGCTGCCGCCCAGAGGACAGA
CCAGCCTCTGCCCGCGATTTCGCCTCGGCGGCGGCGCTGCGGAAAGCGGAGAGCGGGTGG
GCGCGAGCTGCAGGATGCGATGTAGTTCTCTCCTTGCCTCGGAGTTGTCTGAGTTGGTAG
AGCCTCGCCCGGGTTCCCTGAGCCCTGCTCCCTTCGGGCTCGCTGCTAACGGAGTTGCTA
GCCATCGCTGTGCCAGAAAGCTCAGGCTCGGAGCTCCTGCCCTGGGGTAG
1 EXON 1 11,414,509 11,414,637 - 0 129
AGTAGAGCTGTCCCCAGCCGAGGCGCATTGTCTTCTCTCTGCTGACCCATCTGTTTTCTC
ATGGCATCTCGTCAACAAACCCGAATCCAGGCTTACCTGGAGAAAAACAAGATCGGTCCT
CTGTTTGAG
INTRON 1 - 2 11,414,638 11,511,917 97,280
GTAAGGAGCCCTGGTGGGGAATGGT..........AATGCTTGTCTTGTTCTGTCTTTAG
2 EXON 2 11,511,918 11,512,065 0 1 148
GAATTAATGACCAAGTTAATAACTGAGACACCTGACCAGCCAATTCCATTTCTCATTGAC
CATCTTCAATCTAAACAAGGAAACCAAGGACAACTGCAAAGAGCTTTGTCAGGGTCAGCA
GCTCTCTGGGCAGAAAGTGAATCATCAG
INTRON 2 - 3 11,512,066 11,518,577 6,512
GTAATTGGGTGGAGGAAACCAAACT..........ATCTGTTTATATTTTGTTTTAACAG
3 EXON 3 11,518,578 11,518,709 1 1 132
AACCCAAAGGAACAAGAAGGGATTTTAGAAGCTATGATAAACCTTGGCAGATGAATGCAA
AGAAGCCTAAAAAATCAAAAAGTGATCTGGCTGTATCTAATATTTCTCCTCCATCACCAG
ACTCCAAATCAT
INTRON 3 - 4 11,518,710 11,545,153 26,444
GTAAGTTTGTTACTTAAATGTTATT..........AAATAACCGTTTCTTTTAAACATAG
4 EXON 4 11,545,154 11,545,282 1 1 129
TGCCAAGGTCAGTAGACCATCTTAAGTGGAACTGGCGGACTAAACCACAAAGCCGTGATT
TTGATGAATTGAACCACATCCTTCAAGAGAGCAAGAAGCTGGGGAAAGCCCTTGAGAATC
TCTCTCGAA
INTRON 4 - 5 11,545,283 11,562,962 17,680
GTAAGTTCGTTTTCTTGACAATAAT..........CTTGTAAATCTCTTTTGAATCCCAG
5 EXON 5 11,562,963 11,562,991 1 0 29
GTATCGCGATTTCAGATGAACTTGATAAG
INTRON 5 - 6 11,562,992 11,588,373 25,382
GTAAGCTGTGCTCTGTATCTAAAGA..........GCTTTTTCTCTCTTTGCACCTGCAG
6 EXON 6 11,588,374 11,588,546 0 2 173
GAAACATTGGCTTTCAATTCCTCTCTTCTGAGACCTCGTGTGATTGGGGAGTGGATCGGC
AGGGCAGAAAATGATGCCGATCCCCTTGCAGCTGAAATGCTGCAGCCGCCGGTTCCGCGG
AGTAAGAATGACTCATGGGAAAGTGAAGACAGCAGCTCTAGTCCAGCAGGAAG
INTRON 6 - 7 11,588,547 11,596,150 7,604
GTGAGGATCTCCTTCGTGAATCCGT..........AACTAACCTATCAATATTTCTTCAG
7 EXON 7 11,596,151 11,596,317 2 1 167
CTTAAAGATGGAGCCCAAGACGAAAGGATTAAAACAGCAGCAGCAGCAGCACAAGAAACT
CCTGGCTGCAATGCTTTCCCAGGACTCCTTCGAGTCCATCCATAGCCCCACACCATCTGT
AATAGAAGAAGACATTGATAATGAAGACGATGCAATGGAGTTGCTGG
INTRON 7 - 8 11,596,318 11,747,964 151,647
GTAATTTTAAAAATTAATAACTTCT..........TCTGTCACTGTTTGTGTTGTTGCAG
8 EXON 8 11,747,965 11,748,100 1 2 136
AAAATCTGGATGACTTAAGGATGGAGGGTGTAACCACTCTGGTACTTTCGGGGAGCAAAT
TTAACCAAGGTCGTCCTACTCACCCTGCCGAGCCACAGGCCAAAGTCACACTGAACATCT
GTTCAAGGTGTGCCAG
INTRON 8 - 9 11,748,101 11,798,480 50,380
GTAAAACTTATTCTTGTTGTGTGTA..........CCAATGATGATTTTTAATTATTTAG
9 EXON 9 11,798,481 11,798,566 2 1 86
GCTTCAAGGAGACAACTTGATGGAAAGAACAGAAGACACACTACAAATACTTCATACTCC
AGATGAGATAATCCCAGACTCATTAG
INTRON 9 - 10 11,798,567 11,829,814 31,248
GTAAGTTTTAAATTCAAAAGTGTTT..........CTTTTATTTTTAAAAATTAAAATAG
10 EXON 10 11,829,815 11,829,891 1 0 77
ATTCTTTACCTGGGACAGAAGAAACTCTTATGGAGGAAGGTGAAGATTTTGAGAAAACAT
CAAACTTAACAGAACCA
INTRON 10 - 11 11,829,892 11,933,543 103,652
GTAAGTATATTAATTTGTTTTTGTT..........CTCTCCAACCTCTGTTTGCCTCTAG
11 EXON 11 11,933,544 11,933,591 0 0 48
GGAGAAGCCTCTAGTGGAGCACACTCTTTGAAATCCTACATGGAAGAA
INTRON 11 - 12 11,933,592 11,950,962 17,371
GTGAGTTTCTAGGGACTCTACCATA..........TCTAAAATAATCTTTTCTCTGACAG
12 EXON 12 11,950,963 11,951,056 0 1 94
GATGAGTCTTTGAAGCAATTGCAGGTTGTGCATCAGCCATGGCTTTTACCAAGTGACACA
GAAAGTGAAGGAATTGAAGCAGAGCAAGACAAAC
INTRON 12 - 13 11,951,057 11,972,045 20,989
GTAAGTAGATTCCACGTTCAAATCA..........TACCCCTTCTCTTTCAATTTCACAG
13 EXON 13 11,972,046 11,972,102 1 1 57
GTTCTGCTGATCTTCTCTGTGTGCCATGCTCGTCCTGTCCTACCCTGATCTATTCAG
INTRON 13 - 14 11,972,103 11,974,922 2,820
GTATGTTTGCTCAGGGAATTTGTAG..........ATTTTTATTTTTTATTCCTCTACAG
14 EXON 14 11,974,923 11,975,397 1 - 475
GTCTGTCTGTGAAACCGGCAAAGGAAGTTGCAAGTGGTCCTTAAGAATATTATAGCTGAC
TGAATCCTTACTTATTGTCCTAATTTGATGTACTAAATGTAATATCTAAAGAAATGTCAT
TTTCCTAATGTCAATAATAAACAAGAACTCTTGTAAGTAGGGCGTGCACTAATGTATAGT
ACAAGAACACTAATTCAGGCACAGCAGTCTGTTGTCTATGGGATTTGATACTCTTTGATC
TGGTCAGTGTCTTGGGTTTATGTTACTTTATATGTAGTTATTAAAATAGTGCTTAAAATT
TTCTGGATTTTAATTTAGCTAGGGTTTTCTACTTCTATTTTTATAATAATAGCTCATATT
TTGGATTAATACACATTATACTTGCCCACATGTGCCACATTAGTCCTGTGCAGCAGTTGA
CTGCTTAGTGTTAACCTCTTTGCATCAGGAAGAAATTTATCCCCCACAACTGTCC
3' upstream sequence
CAATATGATTATATTACCTATTCCTATTTAAATATGATGGGTATGTTACTTCAGTAAAGC
AAACTAATGAATAATGAAATGCATGCCCTCAGGACACTTGCAAGGAAAAATCACTTGATT
ATGTATGCAATTATTGAGCTACACCTTACTTTTGGAATGTGCTTTGTACTTATTCTAAAT
GAATTGATATCAGTCAATCTATTGACTATATCTGCTATATTTTATCTTATTTGTCTTAAT
GCAAGTTTTTTTTGGTGGGCTTTAATGAATTAAGGCTAAATTATACAACTCTGTATAACT
GTAAAAGAAACAATTGTTAAAGACTCGACCATAGCTAAGGAATAAACAAGCAGTTTCTGA
CTTCTGAATTAAGTCATGTTTAAAATATAAATACAGAAATTAGAAATGATGTAATAAATT
TTCTTACATTTTTTTCTTGTATGATGAAACTAATTTTAGTAATAAGTATTTTTATAAATG
GCAATAAATTAAAGGTTATGTATCAGTTGCTGTTCTTGGAGGTGACAACGTGACTGAGTA
CCATCAACCTAAAGGAGAAGGTTTTATTTTGATCCATGTTTTTGGAGGTTTCAGAGCATG
GTCTACTAGCTTCTTTGCCTGTAGTGAAGCAGATTGTCATGGCAGAAGGAATATGTGACA
TGAGATAACTTACTTCATGAAGGCCCAGAAGCATAGAGAGTGACAGGCAGGAGCAACATA
TACCTTTCAGTGACCCACTTCCTCCAGTCAGGTCCACCTTTTAAGTTCCACTACGTTCCA
ATAACCCATTAACTGTCCTTTCATAAATAGATCACCCCACTGATAAAGGTCTGAGAACTT
AAGAGCCAATTGCTTCTCTAAAACCTTACTTATGGAAATGTAATTGGGAACCCTACAAAT
CTTGGAGTGGGGACATTTTTATGCAAATTATAACAGCTTGGAAAACAATTTTTAAGCAAA
AAGCCAGAAAGTAGGAGATTGGGATTATAGGATCAGATGC..........

Sequence Detail Report

Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000137824
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 463 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information