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Target CDS Information

Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Cross Reference
EMBL AC134435, AC163668
GO GO:0000045, GO:0001843, GO:0003924, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0003924, ...show all
MGI_trans_name Rab23-002
OTTP OTTMUSP00000062962
OTTT OTTMUST00000051908
UCSC uc007anw.2
UniParc UPI00000E9AF4
Uniprot/SPTREMBL M0QWL7
Vega_transcript OTTMUST00000051908, Rab23-002
Vega_translation 178886, OTTMUSP00000062962
Definition protein_id:ENSMUSP00000137896
translation:
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQYVPSALSL
GSDL

Chromosome 1
Length
Position(start - end)
193
33,723,851 - 33,724,045
Orient to Chromosome plus
Link Location : (1:33723851-33724045)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Transcript ID ENSMUST00000138024
Reports
substitution
cSNPs0
Insertion21
Deletion29
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000138024)
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQYVPSALSL
GSDL*
MSMv4 transcript
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQYVPSALSL
GSDL*
homology100.00 (65 / 65)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Transcript ID ENSMUST00000138024
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAAACCAAACGCCAAGCCAAACAAAAACAAAAAAACAAACCCCAAACTAA
AAAGGAAGGAGAAAACAATGGGTTTGGCATGCAGTGTGTGCTTTTGTGTACAGCACTTTG
TTTTAACCTTAAGCTTCTGTCATTGTGTGTTGTTAATGCTTACAGCTGCAGAGACTCCTT
TTCATGGCTGTGTAGTGGTTCCATTACACAACGGAGAGGTATTAGTTCGTTGACATCTTT
TGGGTTATTTCCATTTGGAGAGTATTAGGACAGATGCAGCTATGGGTGTCCTGACATCTG
TTTGCCTGTATATCATAAGGACAGTTCCTATCAGCTGTGTGACCAAGGAATGGGTGGATC
ACAGGGTGCACAAATGTAACAAACTCTCCTTCTCGTTCAAAGGAGTTGCTCCAGCACACA
AATTCAGCTAATTCACATTCTTTTCGACACTTGGTATTTTATATCACCCTCCCCTGTTTT
ATTTTGATGCATACAGAAACAACCAACGTTTATGTATTTTGAGACATAGTTTATTGTAGT
TCAGGCTGGCCTTGAAATCCTGATCTTCATGCCACACCATCTTTCCAAGTACTAGGATCA
CACACGTGTGTTTCCACGCCGCGTTTGAAGCGAGTTTGCTTTTTTGCAGGACCTTTTTAA
ATTTGTGGGTTAGTTCTCTGAGTTGTTAGCCATCACGGTCTTCTATTTTGTTCAGTCATA
CCCTGCAAACAAATTATTTGTCTTCATTCATCACTTTTTTTTTCACACTTCAGTGCTACC
ACGTGAGTCTCAGGTGGTGACAGACTTCTGAGGCCCCCGGATACCTGACCCTGTGTAGGG
AAACAAGGCGCACCTTCAGTAGGTTAGCACATCCTGCTCACCTTGGTCTCCTTGGGTACC
AAGGCCTGATGCTGTGCAAACCCAGCCCGCGCCTTCCCTGCCAGCGCAGGGCGGGGCCGG
TGCTGAGCATGCGCAGACCAGGTGGCGCATGCTCCTCAGCGCGGCGGGCG
1 EXON 1 33,719,909 33,720,173 - - 265
GGAGTCCGGCGCGCCCTCCATCCCCGGCGGCGTCGGCAAGGAGTAGCTCGGTGAACCCGG
ATACTAATAAAGTTCGCTAGAGACTCATAATCGTTCTGAAAGAGCGGAGCGGGTACGAGG
CGTCCGCGGGGAGGAGCCGGGCTCGGTGCTGCGGGCTGTGCGTTCCGGGCTCGGTGTTGC
GGGCTGTGCGTTCCGGGCTCAGCGCTGCGGGTTGTGCGTTCCGGGCTGCGGGCTCCGCGC
TGAGGGTTCCGGGCTGCGGGCAGAG
INTRON 1 - 2 33,720,174 33,721,607 1,434
GTGAGTGCGGCCTGCGCGGCCTCGG..........TTTTGTTTTTGAACTTTAATTGTAG
2 EXON 2 33,721,608 33,721,699 - - 92
GGTGAAGAATTGTTTAGATTGAGAAGAGGACGTCGACTTCCCAAAACTGAGCCAGTGTGA
AACACAAGCTGGATGAACACGGTCAGATCTTG
INTRON 2 - 3 33,721,700 33,723,785 2,086
GTAAGGAGTGTAGGTTTGTATTGTT..........GAAACGATTCTGTTTTAAATTACAG
3 EXON 3 33,723,786 33,724,102 - - 317
GTTTGAGGGAGACAGTGTGGTCTCCTGGAGTTAGAGCTGCTGCAGAAACTCTTCCTGTTT
CAAAAATGTTGGAGGAAGATATGGAAGTGGCCATCAAGATGGTGGTGGTGGGGAATGGGG
CGGTTGGAAAGTCGAGCATGATTCAGCGCTACTGCAAAGGCATTTTCACAAAAGACTACA
AGAAAACCATCGGCGTAGACTTTTTGGAGCGACAGATTCAGTACGTACCCAGCGCTTTAT
CCCTTGGTTCCGATTTGTAAAGTGTCTAAGCCTTGACGGGAAAGAGAAACAGCTGTGCCG
TCTAACCATGCCAGCCA
INTRON 3 - 4 33,724,103 33,724,933 831
GTGAGTAGCAGACGCTCATGTACAG..........GGAATAAACTCATCTCTTGTTTCAG
4 EXON 4 33,724,934 33,725,019 - - 86
GGTTAACGATGAAGATGTAAGGCTAATGTTATGGGACACTGCAGGTCAAGAGGAGTTTGA
TGCAATCACGAAGGCCTACTATCGAG
INTRON 4 - 5 33,725,020 33,734,701 9,682
GTGAAATGTTTCTTCTGGCTAGATA..........ACAGTTTCCTTTTGTGATCTTGCAG
5 EXON 5 33,734,702 33,734,858 - - 157
GAGCCCAGGCTTGTGTGCTTGTATTTTCTACCACAGATAGGGAATCTTTTGAAGCGATTT
CCAGCTGGAGAGAAAAAGTAGTAGCGGAGGTTGGAGATATACCAACCGCACTGGTGCAGA
ACAAGATCGATCTGCTGGATGATTCGTGTATCAAAAA
INTRON 5 - 6 33,734,859 33,736,799 1,941
GTAAGATGTCGCTCTTCTTGCCCGC..........TGCTTTGCTTTTGGTTGCTGTGCAG
6 EXON 6 33,736,800 33,736,882 - - 83
TGAGGAAGCGGAGGGACTGGCCAAAAGGCTAAAGCTGAGGTTCTACCGGACGTCCGTGAA
GGAGGACCTCAACGTGAGTGAAG
INTRON 6 - 7 33,736,883 33,738,287 1,405
GCAAGTACTGCAGCCCAAGTCTTCG..........TACTGACTGTGTGTGTGTTTTCTAG
7 EXON 7 33,738,288 33,738,380 - - 93
TTTTTAAATATTTGGCTGAGAAACACCTACAAAAACTCAAACAACAAATAACCGAAGATC
CAGAACAGACACACTCAAGTAGTAACAAGATTG
INTRON 7 - 8 33,738,381 33,739,252 872
GTAAGTGCGTGGTAAGAACCCAGCC..........ACTGTGCTTTCCCTCATTTACACAG
8 EXON 8 33,739,253 33,742,557 - - 3,305
GTGTCTTTAATGCATCGGTCGGAAGTCACTTGGGCCAGAATTCAAGTTCCCTTAATGGTG
GCGATGTCATCAACCTTAGACCTAACAAACAAAGGACCAAGAGAACCAGAAACCCTTTCA
GCAGCTGTAGTGTACCCTAAACTGTTTCATGGAGGACAAAGCTGAATTGCACCGTGCAGT
TAACGGCACCGTGTGCGGGCTGTCCTGCGTGTGTCGTGGGCCTCTCACCACGCTCTGAAA
GCTGACATTGTAAGGCTGCTCTGCTGTGCTTCTCAGAATGTAGATGGCGCCCTCTGCTGG
AGAATTACTGCTCTGTGGACTCACTCTAGCTTTTTACCTTAGACGAGGCTTCTCCTGTTT
TTGAACGGACACCAGTGGAAATGTCAAAAACAGGTTTTGCTGAATTTTAAATTCTGAAAA
CAAAAACAACATGACTAACTACATCGGTAACCATTTTACCCTGATGGACCATGAGGGATG
GCGAGCATTGTTCTGACACTGGGCGTCGAGCTTTTCTGGAATGTTCGGTCTGAATGCTTA
AAGAACATATGGAAGGGAAACCCGGACTATGTCAGACTGCCCTGGTGTGTGTGTTGTCAG
AGGTACTCGTGCAATATCCGTGATGTGCGGACTATGGGGGTGTGCATGCAGACTCCTGGC
TCAGGCAGTAGGCCTGTGCCCTGGGAAAGGGAATGCAGATTCTAGTCAGTTCGCTCGCTC
GTACAACCATTGCGTATGTTTCTGGTCTCACCTGAGGCGTCCGGACATACTTTACAGAAC
GAACTTGGACCCAAGTGTGCCAAACACTACCGCTAATTTTTACACTACTTTCCTATTCAA
ATTTGTATTTATGACATCTTGTAGAGGCAGTTTCCTCTCCGACAGGTAGATGACAGGAAT
GTAAATGTCTGACTGCTCGGGCCTGTCCCTCCTGGGATTCTCCCAGAGCCTTCTCCATAG
CCACTGTAAGCAATGTGCCCGGTACACACAGCAGCCTGCAGCCACTCAGAAGGCCCTGTG
GAGCGCGTGCACACCAGCTTCTGGCTGCTGACCTGAGACCAAACTCTAAATTTCCAAGCT
GAAGGGGACCATCTTTGCAGAGTGATGGTCTTTGGTCCTGATCACAGATTTTCTGAAGCC
CTGCAACTCTAAGGCATCCTTTTGTTTACACTCGTAGTATAACATTTACCATTATTGCTT
AAGTTTTTCTGTGGCCTTTGGGGTACGTGGACCTTATCAGGAAGGATCGGTAAGAAGCGC
CTGTAAAGACCCGGTATGGGAAAGAAGGGGAAACGTGTGAGCTGGACACCAGTCTGCCTG
CCAAAGAGATAATATCATGAGTTCTACTAAAAACTCATTATCCTTAATCAGTCATTTTAT
TTAGAAAATATCAATAACCCGTTTCCACAGTCCTGGTTTTCATGTACTTCAAAATATATA
AAAGTGATATTTCTTGGAATGTGTGCTTTTCCTTTCTTTTTTTTTCTTTTTTTTACTAAA
ATATATAAATAGTTCCTATATTTCTCTTGTCTTTTTTTTCTTTAAAGTTTACCCTTGGCA
TACCACCCATCCTGCCCAGCACAGGTTCCTGTTGCGAGCAGAGGTCGCTGAGCGCCCTCC
CTCCATGGTGGTCCACATGCTTGCTTTTCCCATTGGCATCCCAAGCAGTCAGGATCATCT
GTGTTGTCAGCTGTTAGCGCCCCTGGTGCAGGGTAAGGTGGGGGACTTGGATCCACACAG
TGGTGCCTGCTGTGAGACGTAATTTTTTTCCTCTTCAAACACAGACTCCTCAGTTTTTAC
ACAAAGTAAATTTGTTGGCAAATAAATTAGTTGACCCTTTTAATGGCATTGGCAGAAAAT
TCATTCCTTATAGAACATTGTAGCTTTATTTGTAGCCACTAAATGCATGGTAAAAAGGTG
TGTGGTCTGTCTCTTTAAAACAGTGTCTGGTGATGGCTGCCGTTTCCTTAATATTTGTTA
GTTTGTCTCCCCGTCCCCCTCCCTCTCCCTCTCCTGGAGCTGAGGACTGAACCCAGGTAA
GTGCTCTACCACTGAGCTAAACCCCAGCCCCTTCCTTAATATTTGTAACAGAAGTTTATG
TGTTTTGTTTTATCCATTTTTTATGGGAGCATTTGTTACACATTTGGTTTTTACTTTGCA
CCACTGTATTTTCTACCTAACTTAAAAAGGTCTAAAATCAGCCACAGGTAATATTAATTT
ATCAATATATTCAATTCTGAAACCCTCAAAGGCCACATTATTGGTTTCTTCTGTGACTGT
AACGTTTATGAACTCTGGGCCACCAGACCTTTGTGCTCTAAGTAACTTTTGCAGTGTCAC
CGGTTCTTAGTGGCGGGCACAGAGCTGTGAAGTCATTGCCATATCTAAGAGTTCCTCAGG
TTTCTGCAGTCTCGGCCTAAGAAGGAGATAGTTTATAAAACAGCCCATATACATACAGCA
GTTCAAATAAAAGCAGGTTGAACTGTTTCTTCTCCACTCAAGGTGACCATACACATGGAG
ATTTCAAATTCCAGCACTACCACAGGGAGCGTGTGTGACCCCTCCGCTGCCGAGTGAAGT
GGGGCGGATGCTCCTGACTTGTCTTGGCAGAGCTGAGAACTCGGGTGTGGCCCTCCTGTC
TTTCTGAGGGTTTAGGATGGGGAGTTGGCCTTAGAACCCGATGCTGCCCCCTGAGGCGCT
CTTGTAATCTGAGATGCTGCTTGCCTCTGGAGGATCCTGGTGGCTGTGGTGAGTGCCCTG
GGAGCACCTCAGAGAGATGTGTGGGCTGCAGGGAGCCCACAAGGGCAGAGCTTTGGCTTC
CATAGCCTTAGGTGAGCAGATGGCTTTAGTCACACTAACAGTCACGTCGAACGTGCTGTT
GCTCCTAAGAGTTTCACGTATAAAGCTGAAAAATACATCATACAAATGAAGCTGTCTGCA
CACAGGTAAACAAAACCCCAGCAGGGTCTGAAATGCCCAGGTAGCCAGCGCCCAGATGGC
AGACTGATTCGGCCAAAAGAGTCTTGGTTACTGCCACTTTTCTGTTGTCACTTGAAGTAT
CTATAGTAGGATGTTGATAAATGGTATTTTAAAAATAAAATCTTTGGGTCAAAGGAAAAA
CTTAACCCCTTCTATATTTTTGTTACTAATAAATAATGCTTTTGTAAATCCGAATAGAAA
ACTACTTGTATGTTTTCCTATTGAGTGGTACTTAACGCCTTTGGGGTTAATTTTAAAATG
TACTACTTGATTAAAATTTCCACAAAGTTGAATTCCAATAACTCAAAAAAATAAAACATT
TCAAA
3' upstream sequence
GCTAGAATGAATTGTGTGTGGTGTGTGTGATGTGAGCCAGCAGAGTGGGGTGGGATGCTC
AAAGGAGCCAGGTGTGGGGCAGTGGGAGGCCATCCTTGGCTACAGAGTTCACCAGCATGA
GAGCTTTCATTCATAAATTAGCAGATGGGACTCCCTCAAACATCAGAATATCCTAGAAAC
AAGTCCCACGGAGCTACTTTGAATATGAATACGCTCACCGTCTGGGCATCGGTTAGTGTC
ACCTAGTAGAGCCCTGCTTTAGGTGGTTTTGCTACAAACGCTTACTTTCACGACTAGTTG
TTAAAAGAGTCATGTTTTTGTCTTGAGGCCTTGGGTCTCCCACACTACTATTCTACCTTC
TGGTGTAAACTAACATAGAGCTTAGTCGGTGTGTCAGACACCTGGCTCAGCCACCCTCTC
CTTTACACCTCAAACCAGCATCACCTATGGGCAAGAGCTCAACCGCGCGCCCCCTGCTGG
CCAAAAGGTGCATTGGCTGCTCACACCGTCGTCTCTGCAGAACATTCTGCTCTGTGCAGC
TCATCTCATTTCCTTGTAGGAGCAAACTAAGCTTAAACACACTCATGTCCCCGTTGCTAC
CGCCTCCAAATCTGCAGCTGTTCCTACCTCATTTTGCATACTTGGGGACTTGTGTTGCTC
AGCTTTCCAAATAGCATCATATAGACTTGAGATGTATCAGCATTTTTCAGGATCAGTCAT
TTGAAAATGATCAATCATGTGGACTAGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGC
TCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTA
ATGGGATCCAGTGCCCTCTTCTGGTGTGTCTGAAGAAGCCAAGTGTACTCATAAATTAAA
ATTTTTTTTATTTTTTATTTTATTTTATTTTTTAAATCAATCGTGACTTTCAGGTCCCTC
TGTGCTTTCATTTCATCAAATATTCTGTTGCTGTAATAAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Transcript ID ENSMUST00000138024
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 65 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information