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Target CDS Information

Gene Symbol (Gene ID) Simc1 (ENSMUSG00000043183)
Cross Reference
EMBL AC155262, AC165145
GO GO:0005575, GO:0008150, GO:0032184
goslim_goa GO:0003674, GO:0005575, GO:0008150, ...show all
MGI_trans_name Simc1-003
OTTP OTTMUSP00000047380
OTTT OTTMUST00000068550
UniParc UPI0001DD34D5
Uniprot/SPTREMBL E0CY56
Vega_transcript OTTMUST00000068550, Simc1-003
Vega_translation 214483, OTTMUSP00000047380
Definition protein_id:ENSMUSP00000124474
translation:
MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVAASSQCQDSGVGLETAH
LCHGGRGTNSAWTSSLSTLRSANPGR

Chromosome 13
Length
Position(start - end)
33,266
54,503,876 - 54,537,143
Orient to Chromosome plus
Link Location : (13:54503876-54537143)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Simc1 (ENSMUSG00000043183)
Transcript ID ENSMUST00000138869
Reports
substitution
cSNPs0
Insertion21
Deletion45
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000138869)
MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVAASSQCQDSGVGLETAH
LCHGGRGTNSAWTSSLSTLRSANPGR*
MSMv4 transcript
MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVAASSQCQDSGVGLETAH
LCHGGRGTNSAWTSSLSTLRSANPGR*
homology100.00 (87 / 87)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Simc1 (ENSMUSG00000043183)
Transcript ID ENSMUST00000138869
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTTTTGAAGTTACTTGAGCATAAGCAGCAGGGTTTTGTCAGTATTGCAC
ATTTTTAAAATAGCCATGGGCCCTATTTTGATTTAATGTCCCTACCCTTCAACAAAACAA
CCAAAGAATTCACTACTTACCCATATTTCCCTCTGATGGGGATACAATTTTATCCCTATA
TTTTCTGCTTGCTCACAGCATTGGAGTATACGGGCACTCTGGGACCTCATAGCTCTCTGT
ATGTGCCTTTTCAGTGGTTTCCGTCAACTAGAAACTCAACAAACTCTTACATCTGACAGT
TTAAATTCCTGTGACACGTATTGTTGGTGAAACCGCAAATCGGCACAACTTAAGACAATT
TGGTACCATTTGTCAAAATAACAATAAAAACATAGATTTGATCCAATAAACCTGCTTCTG
GGAATTTATCCCACGGATTTACCTGCACACACAAGAGTGGGTATCTCTCCCTTATCTCAG
CCAGAAGCCCCAGTCAATAAAACCCTAGGTTCAGGTTACCCTTTTCAGCCCCTCAGGGCT
TCTTTAACCCGAAGGCGTCACTGCTCCTTCTGCCAGGTGCAGGCTCCACTACCGGGTCAA
TTAAATGCGCTATCAGAGGCTCCATCAGCTCACTCCAGTCCTCACACCTGCAGCCAGGGG
CTCGTCACCAGCACTGCCCACTGTGATCGGTTGAGAGCGGCGGCGGACAACCTCTCAACC
TCAGCGTTTTTCAAGCCCGCCGACCATGCGGCCCAGCCCCTCGGTTCTATCCCTCCCTTT
CCCTCTCTTCCCTCTCTCTCCTTCTCTGAGGGAAAGGGAGCCTGGCTCCTCCAGGGTTCT
GTGACACTGCCCTGACCCGGGCGCGCGGCTGCCCCCGAGATAGGCGGGGCTCCGAGCGGG
ACCGGTCCTCTGGAGGCGGGGCGCGGTGGGGGCGGGGCAATGGAGGGGGCGGGGCCGGCG
GGGTACTAACCCCGGTGTCGGCGACGCCTTCGCTGCAGTCGCTTCAGCAG
1 EXON 1 54,503,809 54,504,004 - 0 196
CTGGAACCGGAGTCGGAGTCGCCGGGGCCGCTCGCCGCTCGCGCGTGGCTCCGCCGGGCC
CGTAGCCATGGAGGACTTTATCGTGATCTCCGACGACAGTGGCTCCGAGAGCTCGGCCGG
GACCCGCTCGGGCAGGGCGCGGAGGCTGCGCCGGGCCCTGTCTCGGACCCCCGGCGCGCT
GCCCCGCCGAACCGTG
INTRON 1 - 2 54,504,005 54,529,153 25,149
GTGAGTGAATCCACTGCCGCTCGCC..........CTAATTGATGTCACTTGACTTTCAG
2 EXON 2 54,529,154 54,529,223 0 1 70
GCTGCATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCAT
GGAGGAAGAG
INTRON 2 - 3 54,529,224 54,537,081 7,858
GTAACATAAATTATAAGGACATATC..........TGACTTCTTATTCTTTTTTCCACAG
3 EXON 3 54,537,082 54,537,236 1 - 155
GGACAAACTCTGCCTGGACGAGTTCTCTTTCTACGCTACGTAGTGCAAACCCTGGAAGAT
GACTTCCAGCAGATCTTGAGGAGACAGCGGCAGCACCTACAGCAATCCATTGCAAACACT
GTTCTGTCATGTGACAAACAGCCTCACAATGTCAG
INTRON 3 - 4 54,537,237 54,539,703 2,467
GTAATGAGATACTAGAGCTCTGGTA..........CTTTTTTATCTCTTCTTTATTCCAG
4 EXON 4 54,539,704 54,539,856 - - 153
AGATGTTATTAAGTGGCTGGTCAAAGCAGTGACTGAAAATGAATTAACTCCACCCCAAGA
TGAGACTCAGACCTCTCCAAGAACAGGAGTCTTGAAAACTAGCAGTGACCATCTGTCTCC
CCGGCCTAACCAGAACAAGAACACCAATCAACT
3' upstream sequence
GTAAGGAGCAAGCAAAGAATTGTCTCCAGGGCTTTGAGGGTTTGGTATCTAGCAAATAGG
ACTGTCCTAAGAACAGATTGCTCCAAATTACCAACTCTTGTAACATAGACTTTTTCTCAA
AAAAAAAGAAAAAAAAAAAAGGAAAAGAAAAAAGGACTTATCTAGGTTAGGAGTGTAATT
TTGTAGAATTCGTGTGTGGCATACACTAGGACCTACATTCCATCCACAGAAAAGAAGGGG
CTCTCACTGCTAACCTTCCACCTTTGGGTTCTGATCAGAAAGGGTCCCCTCTTTCTAGCT
CCCTTTTGTGGATACTAACCCAAGTCCAGAGCCTGCTCTGCCGGACATTGCTTCCTCTAA
AGACACCCATCCCACGTAGCCATTCAGACTTACACTGAGGAGCAGTCCTGCCCCTTGAGA
CTTGTAACTCTGATCCATCTCCTACCTCCTAGCTGCTGAGACCTCCAGCTCTGTTGTCTT
CTTTTAAACACTAATGAAATTGACTTGATCAACTTGAACAGAGCCGGTATAGCAGCTCAC
AGGTGTCTTCATCGAAGTCAGAAGCTGGCCTGCCCTGTTCTGTTATCTGGTCACTGTCTG
CAGTTTCTCTGAAAACAACACACTTCCACCATATAATATGTGCTTAAGTGAGTGCTGTCA
AGCCAAGCTTACCCTTCTGAAGTGTTGCTTAGCCTCCCAGTGCTGTGTCTGCCTCTCTCC
CATATTTGTGTCTGATGGGAGAGAAGGTGAGGTCTACCACTGGAAATTCTGAGGCTAGTC
TTAGTAAGAAACCACTAATAGGACATATACATGATGAGGCTGGAGAGATGGCTTAGCAGT
GAGAGTACCGACTGCTCTTCCAGAGGAACTTGGTTCCCAGCACCCACACAGCAGCTCCGA
ACCATCTGTAACTCCATTTGCAGGAGATCTAGGGCCTTTGTTGGTCTGTGACAGCACCAG
GCATGCACATGAAGCATAGAAGTATTTAATATGTTAAAAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Simc1 (ENSMUSG00000043183)
Transcript ID ENSMUST00000138869
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 87 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information