MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cltb (ENSMUSG00000047547)

Cross Reference

EMBL	AC155262
GO	GO:0005198, GO:0005737, GO:0005802, ...show all
goslim_goa	GO:0003674, GO:0005198, GO:0005575, ...show all
MGI_trans_name	Cltb-004
OTTP	OTTMUSP00000043472
OTTT	OTTMUST00000081307
UniParc	UPI0001889CEA
Uniprot/SPTREMBL	F7BHJ0
Vega_transcript	Cltb-004, OTTMUST00000081307
Vega_translation	214497, OTTMUSP00000043472

Definition

protein_id:ENSMUSP00000122336
translation:

EANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEE
WNQRQSEQVEKNKINNSKHHCPARCPSRERPRSTWALLGQRSSCFRQSGTSSGSCHTQPV
LFL

Chromosome

Length
Position(start - end)

5,410
54,593,750 - 54,599,161

Orient to Chromosome

minus

Link

Location : (13:54593750-54599161)
/

Detail Map

name	Cltb (ENSMUSG00000047547)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cltb note : clathrin, light polypeptide (Lcb) [Source:MGI Symbol;Acc:MGI:1921575]

name	Cltb (ENSMUSG00000047547)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000091609

name	Cltb (ENSMUSG00000047547)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000140142

name	Cltb (ENSMUSG00000047547)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000049575

name	Cltb (ENSMUSG00000047547) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26533.1 RefSeq_peptide:NP_083146 RefSeq_mRNA:NM_028870.3 Vega_transcript:Cltb-001 Vega_transcript:OTTMUST00000081304 Uniprot/SPTREMBL:Q3TWZ9 UCSC:uc007qom.1 Fantom:I420020N05 Fantom:I920061D20 EMBL:AK146816 EMBL:AK159480 GO:GO:0005515 GO:GO:0005737 GO:GO:0005886 GO:GO:0030118 GO:GO:0042277 GO:GO:0043231 MGI_trans_name:Cltb-001 Vega_translation:214496 Vega_translation:OTTMUSP00000043470 protein_id:BAE27455.1 protein_id:BAE35117.1 OTTP:OTTMUSP00000043470 OTTT:OTTMUST00000081304 UniParc:UPI00000E91C3
definition	note : transcript_id=ENSMUST00000091609 protein_id : ENSMUSP00000089198 translation : MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR

name	Cltb (ENSMUSG00000047547) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cltb-004 Vega_transcript:OTTMUST00000081307 Uniprot/SPTREMBL:F7BHJ0 EMBL:AC155262 GO:GO:0005198 GO:GO:0005737 GO:GO:0005802 GO:GO:0005886 GO:GO:0006886 GO:GO:0008150 GO:GO:0030125 GO:GO:0030130 GO:GO:0030132 GO:GO:0032050 GO:GO:0043231 GO:GO:0060170 GO:GO:0072583 MGI_trans_name:Cltb-004 Vega_translation:214497 Vega_translation:OTTMUSP00000043472 goslim_goa:GO:0003674 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005794 goslim_goa:GO:0005886 goslim_goa:GO:0005929 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000043472 OTTT:OTTMUST00000081307 UniParc:UPI0001889CEA
definition	note : transcript_id=ENSMUST00000140142 protein_id : ENSMUSP00000122336 translation : EANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNSKHHCPARCPSRERPRSTWALLGQRSSCFRQSGTSSGSCHTQPVLFL

name	Cltb (ENSMUSG00000047547) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q6IRU5 RefSeq_peptide_predicted:XP_006517481.1 Vega_transcript:Cltb-003 Vega_transcript:OTTMUST00000081306 UCSC:uc007qon.1 Fantom:2310046E19 Fantom:4833419E16 Fantom:B230331K14 EMBL:AK009844 EMBL:AK029382 EMBL:AK045989 EMBL:BC070404 GO:GO:0005198 GO:GO:0005737 GO:GO:0005802 GO:GO:0005886 GO:GO:0006886 GO:GO:0008150 GO:GO:0030118 GO:GO:0030125 GO:GO:0030130 GO:GO:0030132 GO:GO:0032050 GO:GO:0043231 GO:GO:0060170 GO:GO:0072583 MGI_trans_name:Cltb-003 Vega_translation:214498 Vega_translation:OTTMUSP00000043471 goslim_goa:GO:0003674 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005794 goslim_goa:GO:0005886 goslim_goa:GO:0005929 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH70404.1 protein_id:BAB26539.1 protein_id:BAC26430.1 protein_id:BAC32563.1 OTTP:OTTMUSP00000043471 OTTT:OTTMUST00000081306 Reactome:R-MMU-157858 Reactome:R-MMU-162582 Reactome:R-MMU-190828 Reactome:R-MMU-190873 Reactome:R-MMU-195721 Reactome:R-MMU-196025 Reactome:R-MMU-199991 Reactome:R-MMU-199992 Reactome:R-MMU-3858494 Reactome:R-MMU-4086400 Reactome:R-MMU-421837 Reactome:R-MMU-432720 Reactome:R-MMU-5099900 Reactome:R-MMU-5653656 UniParc:UPI000024ECA2
definition	note : transcript_id=ENSMUST00000049575 protein_id : ENSMUSP00000053371 translation : MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADTIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR

name
type	misc_feature
link
xref
definition	note : contig AC155262.2 75073..168429(1)

name	Cltb (ENSMUSG00000047547)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081305 Vega_transcript:OTTMUST00000081305 MGI_trans_name:Cltb-002 OTTT:OTTMUST00000081305
definition	note : retained_intron note : transcript_id=ENSMUST00000146301

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cltb (ENSMUSG00000047547)
Transcript ID	ENSMUST00000140142

Reports
substitution
cSNPs	1
Insertion	9
Deletion	13
SNPs	+1kb 54599192(c.-31C>A), 54599266(c.-105G>C), 54599335(c.-174T>A), 54599336(c.-175A>G), 54599411(c.-250A>G), 54599528(c.-367T>C), 54599589(c.-428T>C), 54599714(c.-553A>G), 54599803(c.-642G>A), 54599978(c.-817A>G), 54600000(c.-839A>T), 54600433(c.-1272C>T), 54600696(c.-1535G>A), 54600751(c.-1590T>C), 54600903(c.-1742A>G), 54601024(c.-1863C>T), 54601035(c.-1874C>A), 54601637(c.-2476G>A), 54601818(c.-2657C>A), 54601870(c.-2709A>G), 54602433(c.-3272T>C), 54602511(c.-3350T>C), 54602846(c.-3685C>T), 54602879(c.-3718C>T), 54602895(c.-3734C>T), 54603019(c.-3858C>G), 54603033(c.-3872G>A), 54603034(c.-3873T>C), 54603063(c.-3902C>T), 54603181(c.-4020C>A), 54603190(c.-4029G>A), 54603608(c.-4447A>G), 54603771(c.-4610T>C), 54604030(c.-4869G>A), 5'UTR CDS 54593864(c.258G>A), 3'UTR INTRON 54594228(c.231-337G>A), 54594273(c.231-382A>G), 54594385(c.231-494T>G), 54594573(c.231-682C>T), 54594700(c.231-809C>A), 54595057(c.231-1166A>G), 54595064(c.231-1173A>G), 54595082(c.231-1191C>T), 54595127(c.231-1236A>G), 54595128(c.231-1237T>C), 54595152(c.231-1261A>T), 54595278(c.231-1387T>G), 54595343(c.231-1452C>T), 54595367(c.231-1476T>A), 54595459(c.231-1568T>G), 54595529(c.231-1638A>G), 54595618(c.231-1727G>A), 54595669(c.231-1778A>G), 54595697(c.231-1806C>A), 54595725(c.231-1834G>A), 54595749(c.231-1858A>G), 54595899(c.231-2008G>T), 54596135(c.231-2244A>G), 54596370(c.230+2352C>T), 54596415(c.230+2307A>G), 54596468(c.230+2254T>C), 54596583(c.230+2139T>C), 54596734(c.230+1988G>T), 54596973(c.230+1749A>G), 54597355(c.230+1367C>T), 54597618(c.230+1104A>G), 54597801(c.230+921C>G), 54598131(c.230+591C>T), 54598171(c.230+551C>G), 54598174(c.230+548G>A), 54598191(c.230+531T>C), 54598313(c.230+409A>G), 54598355(c.230+367C>T), 54598362(c.230+360G>A), 54598421(c.230+301G>T), 54598444(c.230+278T>G), 54598465(c.230+257C>T), 54598497(c.230+225A>G), 54598540(c.230+182C>T), 54598565(c.230+157A>G), 54598623(c.230+99T>A), 54598710(c.230+12C>T), 54598889(c.119-56G>C), 54599036(c.118+8C>G), -1kb 54588912(c.4838G>A), 54589350(c.4400G>T), 54589647(c.4103A>G), 54589968(c.3782G>A), 54590161(c.3589A>G), 54590194(c.3556G>A), 54590248(c.3502T>C), 54590254(c.3496C>A), 54590498(c.3252C>T), 54590499(c.3251G>A), 54590514(c.3236C>T), 54590516(c.3234C>G), 54590895(c.2855T>C), 54591023(c.2727T>C), 54591157(c.2593T>C), 54591426(c.2324A>G), 54591745(c.2005G>T), 54591811(c.1939A>T), 54591839(c.1911G>A), 54591907(c.1843G>T), 54591955(c.1795C>T), 54592017(c.1733A>G), 54592068(c.1682C>T), 54592082(c.1668A>T), 54592094(c.1656A>G), 54592101(c.1649T>C), 54592149(c.1601T>A), 54592177(c.1573G>A), 54592313(c.1437C>G), 54592571(c.1179T>C), 54592613(c.1137T>G), 54592716(c.1034T>C), 54592751(c.999G>A), 54592827(c.923C>T), 54592886(c.864A>G), 54593093(c.657T>A), 54593276(c.474T>C), 54593299(c.451A>G),
Insertions	+1kb 54601818 (c.-2660_-2658dupAAA), 54602114 (c.-2954_-2953insCG), 54603816 (c.-4660_-4656dupCTGAA), 5'UTR CDS 54593849 (c.267_272dupACGGCC), 3'UTR INTRON 54594999 (c.231-1109_231-1108insGCAGA), -1kb 54589350 (c.4399_4400insTT), 54591515 (c.2234_2235insCTT), 54592466 (c.1282_1283dupAG), 54592693 (c.*1056dupT),
Deletions	+1kb 54602696 (c.-3537_-3536delCT), 5'UTR CDS 3'UTR INTRON 54594052 (c.231-165_231-162delACCT), 54595358 (c.231-1468delC), 54595504 (c.231-1617_231-1614delTCTG), 54598463 (c.230+258delC), -1kb 54588936 (c.4809_4813delACATA), 54589146 (c.4600_4603delTTTT), 54589510 (c.4238_4239delTT), 54591960 (c.1789delG), 54592017 (c.1732delC), 54592019 (c.1730delC), 54592862 (c.887delG), 54593162 (c.*587delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	54593864 (p.Pro86Pro),
non-synonymous substitutions
B6 transcript (ENSMUST00000140142)	EANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEE WNQRQSEQVEKNKINNSKHHCPARCPSRERPRSTWALLGQRSSCFRQSGTSSGSCHTQPV LFL*
MSMv4 transcript	EANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEE WNQRQSEQVEKNKINNSKHHCPARCPSRERPRSTWALLGQRSSCFRQSGTSSGSCHTQPV LFL*
homology	100.00 (124 / 124)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cltb (ENSMUSG00000047547)
Transcript ID	ENSMUST00000140142

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGTGCTCTTAACCATTGAGCCACCTCTCTAGCCCTTGTTCTTTTTTTTTT TTTTCGAGACAGGGTTTCTCTGTGTGTAGCCCGGGCTGTCCTGGATCTCAATCTGTAGAC CAGACTGGCCTTGAACTCACAGAGATCCACCTGCCTCTGCCTCCAGAGTGCTGTGTGCTA TCATCAACTGGCTGTGACAGAGTTTTAGTCATGGTTGTTTTGCCTGTTGCTGGTCTGCAG GTTCACTTGAGAAAGTCTGTTGTTTCCTATGTGCATTGTGGCAAGGAAACACCAGACAAG TGTCACAAAGGTGACACTCTGAAGGACAAATGAACACATTAGTAATGAGGTCCTATTAGA CTGTGTACATTTTATCACATGACAGAACTATACTAGAGATAAATTTTAATGATGGTAGCA CAAGGCACATAAGCATTGTGTGCAAGGCATGGCATTTGCAGGTGTTTTTAAGGTTTATTT TGTGTGTATGAGTGTCTTGCTTGCACATGTGTATGTGTACCACCTGCATGCAAATGCCTT CAGAGGCCAGAAGCAGGTACGTGGTTGCAGGCAGTTGTGAGCCGCTATGATGGTGCTGGG AACTGAACTAGGGTCCTCTGCAAGAGCAGCAAGTGCTCTTAACCGCTGAGCCATCTCTCC AGCCCCCCAAATTTAGTTTTAAGATTCATCTCATTATTGTATCAATCCTATGGGAGTGTT ATAATTTATCCTCTTACGATGAATGAAGGGGAGTGTCAAGGAGTTGGCCAGGCTGATGGT AAGGCTCTGAGAGATTGATAGGCCTGAGGCCACATGGGGAGCAGTGTTGCTGGCAGAGGG GAACACAGTGTAAAGGTAGGGTGTAGTCACCAGAGGCTGGGTGCTGGTGTGGGTTGAGGC TGCCTCCTGCCTCCTGGGCGGCCTGCTTTGAGTGCTGTCTTGGTACCAGTAAGAACAGCA CCACAGCAGGGCAGGCACGATGGACCAGGAACGCTGTGCTTTTGTTGTAG
1	EXON 1	54,599,044	54,599,161	-	1	118	GAGGCTAACGGGCCTGCCGATGGCTACGCTGCGATTGCCCAGGCGGACAGGTTGACTCAG GAGCCCGAGAGCATCCGGAAGTGGAGAGAGGAGCAGAAGAAAAGGCTGCAGGAGTTAG
	INTRON 1 - 2	54,598,834	54,599,043			210	GTGAGGGGACACCTGGAGGAGGGTG..........ATGCATTCTCCTGCGGGGCTCACAG
2	EXON 2	54,598,722	54,598,833	1	2	112	ACGCTGCCTCGAAGGTGACCGAACAGGAGTGGCGGGAGAAGGCCAAGAAAGACCTGGAGG AGTGGAACCAGCGCCAAAGTGAACAGGTTGAGAAGAACAAGATCAACAACAG
	INTRON 2 - 3	54,593,892	54,598,721			4,830	GTGAATGAAGGTCAGGGGATCTGAG..........GCGCTCGGTGCTCATGTCCCTGAAG
3	EXON 3	54,593,538	54,593,891	2	-	354	CAAACACCACTGTCCCGCTAGGTGCCCGTCACGAGAACGGCCGCGAAGCACATGGGCCTT GCTGGGGCAGAGGAGCAGCTGCTTCCGCCAGAGTGGAACTTCCTCTGGCAGCTGCCACAC ACAGCCTGTTCTGTTCCTCTGAATCTCTGGGAGCTAGGAAGTGGGACCCTTACCCCTTTC ACCCCACAACTCCTTCCTGGTCCCCTGGCCCAGCCCCTCATGACTCCTGTCAGCCCACTC AATTGTGACTGTCCCTCCTGATGTATTTTTCTTGGCTTAAAGGGTGTGTTAACTCTTTTT ACACTTATTTATTAGTATCCTCATTTCTCTGGAAGCCGCAACTGGTGTCAGCGC
	3' upstream sequence						TCAGTTTGTGCATAGAATTTTCCTAGCTCCGTGTCCTTAAAAGGTGAGGATGTAGTCTTA GAAACCCAGAGCTCGCAGCTGGAAGCAGGAACCCCAACCTGTCTGTGTCTGCTGTCTGCC CTCCAAGAAGAAAGGCAAATTTTCACGAGACAGGGTCTGCAACCTTGCTCTCTGTGATTC TTTAACAAGTCTGAAGGTAGGGACTCTGCTGTCCTCATGTATAGCTGAGAAAACTAAGGC TCCCCAAACAGAATTGGCTTTCGTGTAGAAAGGAAGTGAGGCCAGCGTGCTCTAAGGCTG TGTCTAGGCCTGAGTAAGGGTGGCAAATACAGCATCCGCCCAACCTTCTTCCTCGAGAGT GACCAAGACCCTCTTAAGACATGCAGGCCTGCTGCAGTACAGATGTGCCTCCCTCTTCAG CTATTCCCCCCTGTGGACTTAGGAAAAGCAACAGTGACCACACCTTCTTCCCCTTCAGCA GAGGCCGTATAACAGGACTTTAAGCCATTACGATCTACATGGTGTTTGAAAAGATTTGGG TAATTGCTAACAGTATTAGTTCCCTAAGATTGCCATTAAAGAATACCAAAAAACCTGGCT GCCTTAGAGCATCAGAAATCTGTTGTCTCAATTCCGGAGGCTAAAAGTCCCGAATTTGGG AACGACCAAGCCACGCCCCCCAGAGATGCTAAGGCAGGACCTGTGCCTCTTGTAGCTTCT AGTAGCTCAGGTATCCTTTGGTTTGCAGATATAGGTCTCCAGTTTTGCTTACACCCTCAC ATGGCTATCTGTGTTCATCATTTTCCCATGTATAATTTGTGCGTCCAATTTTTTTTCTTT TTTTGGTTTTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCAATCTTTTTTTTTA AATATGGATACGAGGGGCTAGATAGATGGTTCAGTGGTTAAGAGCACTGGCTGCTCTTCC AGAGGTCCTGAGATCAATGCCCAGCAACTAACTACATGGA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cltb (ENSMUSG00000047547)
Transcript ID	ENSMUST00000140142

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 124 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information