MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Psmd4 (ENSMUSG00000005625)

Cross Reference

EMBL	AC087062
GO	GO:0000502, GO:0005654, GO:0005737, ...show all
goslim_goa	GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name	Psmd4-008
OTTP	OTTMUSP00000026699
OTTT	OTTMUST00000055685
UCSC	uc008qhs.2
UniParc	UPI00015AA1B0
Uniprot/SPTREMBL	F7AI87
Vega_transcript	OTTMUST00000055685, Psmd4-008

Vega_translation

188030, OTTMUSP00000026699

Definition

protein_id:ENSMUSP00000114545
translation:

GSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEALRVSMEEQRQRQEEEARRAAAASAAE
AGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQGTEFSQ
ESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQA
TKDGKNDKKEEEKK

Chromosome

3

Length
Position(start - end)

2,452
95,032,814 - 95,035,267

Orient to Chromosome

minus

Link

Location : (3:95032814-95035267)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Psmd4 (ENSMUSG00000005625)
Transcript ID	ENSMUST00000140348

Reports
substitution
cSNPs	0
Insertion	7
Deletion	5
SNPs	+1kb 95036077(c.-810G>A), 95036767(c.-1500T>C), 95036998(c.-1731C>T), 95038009(c.-2742C>G), 95038255(c.-2988C>A), 95038584(c.-3317A>G), 95038951(c.-3684C>T), 95039130(c.-3863A>G), 5'UTR CDS 3'UTR INTRON 95033285(c.414+197C>G), 95033287(c.414+195T>A), 95033390(c.414+92T>A), 95033405(c.414+77A>G), 95033602(c.349+31A>G), 95034343(c.100-317T>C), -1kb 95027794(c.5020T>C), 95028220(c.4594T>A), 95028355(c.4459C>G), 95028473(c.4341A>G), 95028528(c.4286A>C), 95028704(c.4110G>T), 95028943(c.3871T>C), 95029179(c.3635T>A), 95029187(c.3627C>T), 95029876(c.2938C>T), 95030753(c.2061C>T), 95030789(c.2025T>C), 95031044(c.1770T>C), 95031232(c.1582A>G), 95031478(c.1336A>G), 95031511(c.1303G>A), 95031521(c.1293G>C), 95032595(c.219T>C), 95032702(c.*112C>T),
Insertions	+1kb 95036364 (c.-1098_-1097insT), 95036380 (c.-1114_-1113insTT), 5'UTR CDS 3'UTR INTRON -1kb 95027775 (c.5038_5039insGGTAAA), 95028473 (c.4340_4341insTGTGTGTGTGT), 95030016 (c.2797_2798insG), 95030201 (c.2612_2613insTGTTTG), 95031638 (c.1175_1176insA),
Deletions	+1kb 95037362 (c.-2098_-2096delGTT), 95040145 (c.-4885_-4879delCAAAAAA), 5'UTR CDS 3'UTR INTRON 95034235 (c.100-211_100-210delTT), -1kb 95028970 (c.3836_3843delATGTGTGT), 95029579 (c.3231_3234delTTTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000140348)	GSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEALRVSMEEQRQRQEEEARRAAAASAAE AGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQGTEFSQ ESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQA TKDGKNDKKEEEKK*
MSMv4 transcript	GSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEALRVSMEEQRQRQEEEARRAAAASAAE AGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQGTEFSQ ESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQA TKDGKNDKKEEEKK*
homology	100.00 (195 / 195)

Exon Detail Report

Gene Symbol (Gene ID)	Psmd4 (ENSMUSG00000005625)
Transcript ID	ENSMUST00000140348


..........GAAAAGGGGTTCACATCCCCTGGGACTGGAGTTAGAGCTGATTGTGAGTG
CTGGGTGAGTGCTCTTAACCACTGAACCATGTCTTCAGAAAAAAAGATAAAAGTTGCTTT
TAAGGTCTCTAAACAAAAGATGGCACACACCTTTAGTCTCAGCACTCGGGAGGCAGAGAC
AATTGGATTTCTGAGTTTGAAGCCAGCCTGGTCTACATAGTGAATTTCAGGACAGCCAGG
GCTACACAGAGAAACCCTGTCTCTGAGGGAAAAAAGAAAGGAGAAGATGAATGGGCATGG
TTAGGAGGCACTTGTGTGGTCTGAACTCACTAAAATTCTTTGCTCACATTTAGTGACTGT
GAGGTGCTGACCACACTCACCCCGGACACTGGCCGTATCCTCTCCAAGCTCCACACTGTC
CAACCCAAAGGCAAGATCACCTTCTGCACTGGCATCCGCGTGGCCCACGTGAGTCCTGTT
GGCTCCCTGCTATGAGGGTCTGTGATCCTTTCTGTCCAGAGCTGTGATCTAGTGCTGAAT
AGAGCAAGACGAGAGGACCTGGACCAGTGCTTCTCAGCCTTCAATACAGTTCCTCGTGCT
GTGATGACCCCAGCCGTAAAATTGTTTTGGTGCTACTCATAACTACGATTTTGCCTATTG
TTATGAATGATAAGGTTAATTTCTAATATGCTACCCTGTGAAACGGTCATCCAACCCCTC
CAAGGTGGGAGCCACTGATCTAGAGGGTGCTTACTCAGTATAGAAAGGATGGGGCAGGAT
GAGACTTGGTCTTACACTCTGGTCCACTTGAGGCACAACAGAAAGAGGAGGCATGTACCG
AGTGAGCATTATGGTAGACTTGAGGTTCATAGGTACTGTAAGGAGCAGGAAATGCAGACT
GACTCAGGGACATGTGCTGCTGGGATTCACGGGAACTTCTTTTCCCTTCCAAGTTGGCTC
TGAAGCACCGGCAGGGCAAGAATCACAAGATGCGCATCATCGCCTTTGTC
GGTAGCCCTGTGGAGGACAACGAGAAGGAT
GTGAGTCCACAGACAGCCTGCCAGG..........TTGATTTTTCTCCCTTTCTTCATAG
CTGGTGAAACTAGCTAAACGCCTTAAGAAAGAAAAAGTGAATGTTGACATCATTAATTTTGGGGAAGAG
GTAAGTCAGGGTTGCAGAGCATAGG..........GCCCCCTTGTCTTGCTCTTTACCAG
GCCCTTCGAGTCTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAAGAGGCACGGCGGGCCGCTGCGGCCTCTGCAGCTGAGGCTGGAATTGCTACACCTGGGACTGAAGGTGAAAGAG
GTGGATTCTGAACTCCTGGGCCTGA..........ACCCTGGCCTTCTGTCCTTGCCCAG
ACTCGGATGACGCCCTACTGAAGATGACCATCAACCAGCAGGAGTTTGGCCGTCCTGGGCTTCCAGACCTAAGCAGCATGACTGAGGAAGAGCAGATCGCCTACGCCATGCAGATGTCCCTGCAGGGAACAG
GTGGGCCATGGCTTGGGTGGCAGGG..........CGGGCTGCTGCTCTCCTTTCCTCAG
AGTTTAGCCAAGAATCGGCTGACATGGATGCCAGCTCAGCCATGGACACATCTGATCCAGTCAAG
GTGAGGGCCAGCAGTGAGGCTCTGA..........CGCTGCTCCGTGTGCCTTTTTTCAG
GAGGAGGATGACTATGACGTCATGCAGGACCCGGAGTTCCTTCAGAGCGTCCTAGAGAACCTTCCAGGTGTGGATCCCAACAATGCAGCCATTCGAAGTGTCATGGGGGCTCTGGCCTCCCAGGCCACCAAGGATGGCAAGAATGACAAGAAAGAGGAAGAGAAGAAGTGAGACCGGAGGGAGGGGTAGCTGTGTCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCAAGTTTT
CTCCTTTTGCTTCAAATAGTGATAGCTTTGCACACAGTGGAGGAGTGGGCCTGAAGGAAT
GTCCTTACCTTCTGCTCTGCAGATGGCTGCTGCCTGTCATCTCCATCTCTGACAGTCCCT
TGGGCTTTTTCTTTTTCATTAAGAGAATCTTTACACCGGGCAGTGGTGGCGCACGCCTTT
AATCCCAGCACTTGGGAGGCAGAGGCTCGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCT
ACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGGAAAAAAAAA
AGAGAGAGAGAGGAGAGAAGCTTTGCTGAGGACCCACTCTTTTTTTTTTTTTTTTTTTTT
AAAGATTTATTTATTTATTACATGTAATGTACACTGTAGCTATCCTCAGATACTCCAGAA
GAGGGAGTCAGATCTCATTGGTTGTAAGCCACCATGTGGTTGCTGGGATTTGAACTTCGG
ACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGAGGACC
CACTCTTAAATCCTAAGGCCACTGAGATGAATCGAGGACAGCACCAGGGTCATGGTCTAG
GGACAAGAACAGCCCATGTCTGATTCAAAGAATATGTATGTACGTATGTGTGGGTGTGTA
TGTATGTATGTATGTGTGTATGTATGTATGTATGTATTTTTGAGACAGGGTCTCACTATG
TAGCCTAGACTGATCTATAATTATTATGTATACTAAATTGACCTCAAACTTACAGAGACC
CATTAGCCTCTGCCTCTGTATTGCTGGGAGTATGAACCACCATGCTGGCTCAAAAGAGAA
TTATGAGGGATCTGGCAAGATGGCTCAGTGGAAAAAGGCACTTATCATGAAAAATCCTAA
GAATATTTTAGAAATTTTTATGGTGGTACACTCCTTTAATCCCAGCACTTGGGAGGTAGA
GGCAGGTGGGTCTCTGTCTGGGTCAAGGCAAGCTTGGTCT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Psmd4 (ENSMUSG00000005625)
Transcript ID	ENSMUST00000140348

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 195 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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