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Target CDS Information

Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Cross Reference
Clone_based_vega_transcript AC103635.1-007
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name A830018L16Rik-007
OTTP OTTMUSP00000046232
OTTT OTTMUST00000085555
UCSC uc007ahy.2
UniParc UPI000198D18A
Uniprot/SPTREMBL F6RV71
Vega_transcript AC103635.1-007, OTTMUST00000085555
Vega_translation 178718, OTTMUSP00000046232
Definition codon_start:3
protein_id:ENSMUSP00000121311
translation:
XSNISPPSPDSKSLPRSVDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAI
SDELDKETLAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSS
PAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLE
QIFSV

Chromosome 1
Length
Position(start - end)
78,312
11,518,671 - 11,596,984
Orient to Chromosome plus
Link Location : (1:11518671-11596984)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000141339
Reports
substitution
cSNPs2
Insertion40
Deletion73
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 11588451 (p.Ala91Ala), 11588532 (p.Ser118Ser),
non-synonymous substitutions
B6 transcript
(ENSMUST00000141339)
SNISPPSPDSKSLPRSVDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAIS
DELDKETLAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSP
AGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLEQ
IFSV*
MSMv4 transcript
SNISPPSPDSKSLPRSVDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAIS
DELDKETLAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSP
AGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLEQ
IFSV*
homology100.00 (185 / 185)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000141339
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACACTGGCTGTCTCATTTTGTGGACTCCGCTCTGGAGCTCTGTTGAGTAA
AGTAAGCTTTTTTCTGTCTGTGATTCAATTTCTAACACTATCAGAATTCCTTTTCCAGCA
TTGAATACAAATTTAATGTGATATTCCACTTTCGTTTTCTGTCAGTAGTTATATTTTTTT
AAAAAGCACAAAAAACTCCCTTTAAAACACTGTGTGAAATTATATTTTGACCCAGCTTTC
TGGGAACCTCTTCTTTGATTTTGTTTTGTTTCATAGATTATTTTACTTATATTGGGAAGT
CAAAAAAGTAAGATCCTGACATTTAATAGTTGTAAGATTATCATTTACCTTTGTGTCTTA
AATCTTTTATTTTTCATTTAATATATATCATCAATTCTTTCTAGAATGATAGTTTTTTAT
TGATCTATACTTAAGTGTGAAGTGCTGTATCTGGTTCCAAGTATGTCAGTAGTGTAGGCA
TAGTTTCCCTTGCTGTTTCATCATAAAACTTGAAACTCTGGATACTATCTATCTATCTAT
TTATCTATTTATCTATCTATCTACCTGTCTGTCTGTTTGTCTGTCTATCTATGTACGTAT
GTATAATGTGCTATAATTACATGACAAATCATGACTAATACTGAAATTGCTAATATTAGT
CAAATCTTGTGTCTGCTGTACTGATGAGTGAATTTCTTTCTCTCACATTTATTCAAGCAA
GTAGGTAAAAACGATATCCTGACTAAGTTATTTCACAACTATGATTTATGGACAAAAGTA
TGAAATAAAGAACAAAATCCAATGTTTTATGAAACACAGCCTCTCTTGGTAACCATTTAA
AAAAATAAGATGCTCTGTTTCATAACCAGAATTTTTCATCCTTATTATTATGATCTGTTT
ATATTTTGTTTTAACAGAACCCAAAGGAACAAGAAGGGATTTTAGAAGCTATGATAAACC
TTGGCAGATGAATGCAAAGAAGCCTAAAAAATCAAAAAGTGATCTGGCTG
1 EXON 1 11,518,671 11,518,709 - 1 39
TATCTAATATTTCTCCTCCATCACCAGACTCCAAATCAT
INTRON 1 - 2 11,518,710 11,545,153 26,444
GTAAGTTTGTTACTTAAATGTTATT..........AAATAACCGTTTCTTTTAAACATAG
2 EXON 2 11,545,154 11,545,282 1 1 129
TGCCAAGGTCAGTAGACCATCTTAAGTGGAACTGGCGGACTAAACCACAAAGCCGTGATT
TTGATGAATTGAACCACATCCTTCAAGAGAGCAAGAAGCTGGGGAAAGCCCTTGAGAATC
TCTCTCGAA
INTRON 2 - 3 11,545,283 11,562,962 17,680
GTAAGTTCGTTTTCTTGACAATAAT..........CTTGTAAATCTCTTTTGAATCCCAG
3 EXON 3 11,562,963 11,562,991 1 0 29
GTATCGCGATTTCAGATGAACTTGATAAG
INTRON 3 - 4 11,562,992 11,588,373 25,382
GTAAGCTGTGCTCTGTATCTAAAGA..........GCTTTTTCTCTCTTTGCACCTGCAG
4 EXON 4 11,588,374 11,588,546 0 2 173
GAAACATTGGCTTTCAATTCCTCTCTTCTGAGACCTCGTGTGATTGGGGAGTGGATCGGC
AGGGCAGAAAATGATGCCGATCCCCTTGCAGCTGAAATGCTGCAGCCGCCGGTTCCGCGG
AGTAAGAATGACTCATGGGAAAGTGAAGACAGCAGCTCTAGTCCAGCAGGAAG
INTRON 4 - 5 11,588,547 11,596,150 7,604
GTGAGGATCTCCTTCGTGAATCCGT..........AACTAACCTATCAATATTTCTTCAG
5 EXON 5 11,596,151 11,596,317 2 1 167
CTTAAAGATGGAGCCCAAGACGAAAGGATTAAAACAGCAGCAGCAGCAGCACAAGAAACT
CCTGGCTGCAATGCTTTCCCAGGACTCCTTCGAGTCCATCCATAGCCCCACACCATCTGT
AATAGAAGAAGACATTGATAATGAAGACGATGCAATGGAGTTGCTGG
INTRON 5 - 6 11,596,318 11,596,964 647
GTAATTTTAAAAATTAATAACTTCT..........TCACTTTGGGAAATTTTTTTTTCAG
6 EXON 6 11,596,965 11,599,993 1 - 3,029
AACAGATTTTCTCTGTGTAGTCCTAGATGTCCTGGAACTCACTCTGTTGACCAGGCTGAC
CTTGAGCTCAGAGATCCACCTGCCTCTACTTCCTAAGTGTTGGGATTAAAGGTGTGGACC
ACCATGCCTGGCTGGAAAATCATTTTTGTAAAAGGATATGAACTTTTCTTTGCAAGCAGT
CCACAAGTAAAATGTTTTTTTTTTTTAATTGAGTGGTACTAGCTATTCTATAGAGAATTA
AAATAATTGGTATATGCTTTTATAGCAACATTCTATTATATTTGAGCTGAAAAAAGAATA
AATAATATATTTATATGTAAAATATCAATGCATTGCAAAAGTACTTTATTTAAAATTCTA
AAACAGATTTCTTGGAATTGAGTGTTGATAGCAGTAAATTATGTTCTATATGAATGATAA
GTCTCCATGCATATACCTGCAAAGGTGTTACTCAGTAGATGATGGCAGGGTTCCAGATCT
TTTCTAGTCGTCTAATAGCTTCCTAGAGTCAAGATTTAAGGAGACCGAATTATCGCACTT
TCGGTTAGATACTATTGGCACTTGTTTTCTTTTAAGCAATTGAGTCTTATTCCTCTAACT
TCTAATCGTAAAGTGACAGGGCTTCTGGAAACTCTGGCACCTTTATCCATCCTTCATTCA
CTACCAAGGACTTTGATAAGGTCATAAAATAAAATCATTTCTGTTACAGGCATTTTCCAG
TCATGTTAAAAATATAAACTCATCACTTCCGCCATTTTCTTTACCTATGCTATTACAGTC
AAATATAATGGTGACTCCTCGTGCAGAAGAGGGGGCAGAGGTCACCACCGCATACTTGTT
TCAAGAAGCTGGTTCCTCAGCTTAGTCTTGCAGGACAAGGGGGTGTAAACCTGGGAGGTG
GAGTGTGCCCAGACTTCTGGGGACTTGTTCACGTACATATGGGGTCTTTGGTAACTGTGT
CTGTCAATTGCTTCTCTGCTGGTCAGGGATAGTGAAAGACATGATCGAGAGACTCTTAAG
AGATTCATATGTCTACTTTATGCTGATTGTCCTGAAACCTCGCCTGCTCTGTTCAAAGTT
TCTAGCTTTCTAAGCTAAATACCAGAGGGTTGGATCTTGGCATCTACCTTGTGATAAGCC
ATTAGCGATTGGCTCTCATTAATCCTTCTTCTCCTTTTAGATATTAAGCCTGCATTCTAA
CCAGGCTTAACAATAAAAAATTGTAGAAGCTTTGGGCATTCTCTGTGTAGTCTCACATAT
CTTTGCCCAGGTGGCTGAAAGAGATGCTGCTCTCTTAGTGATGAGCATTTCTTGTAATGG
CATGCAATGCTCAAGCACACAGCAGTAGCATTAAATAACTCCACATGCATTTTCCCTGGT
TTTGAAAATGATTTCAGAGAAACATGAGATTGCATTTAGCTGAAGAAAACACAAATGCTA
ACTACTTGACAGTTTATGCGAAATCAAAATTTAGTACATAGAATCAGTGTTGTGATGTAA
CAGACATTGTTTAAAATATTATTTGGGAATCTATGACACGTTGCTGAATGAGCTTGCTGT
AATGTGTTCTTAAGGGTTTAATTTTTTATTATCTATGCCATAATAAAATCAGCTGAAAAT
GTGTCATGCATGGAAAAGTAATCTGTAAATGTGAATTGATACGTAAAATATATGACTTTA
TTTAATATTTATATAAAAATGAATTGCCCATCAATATAACTGGTTGACTTAAGCAGAAAA
TCTTTTAGTGTAGATAGTACATATAAATAAACTTAGTCCTTCTGTCTTTATTGAAATGCA
GTGTTGTTAATACATGTTGATTATATATTCACAGTTATTCAAATGTATGTCTGTGGATTT
ATTTCATAAACATCCTAGGCATGAGGAAATATATTTAAGGATCCATTTCATATTAAAGTC
TATGACTATTTTAAATTCTATTTATAAATTCCCACTTATGAAATAATATCATCTAGCAAA
TAATGAACTATCTGTACGTGGAGATTTAAAAACATACCAACATAAGCCTCTATGGGTTTT
TTTTCCCTTACAGCACTGATCATTTAGAACATCAGAATAGCAAAATAAACTGAAGATTCT
TCATTATAAATGATTCTTTATAAAAATTTTGAGGACTTTAAGACATTCAACCACTGAGTA
TTTCAATATTATGTGTAAGATTGCTTAAAACATTAATTCATTCAGTGTAGTATAAAAGCA
AGTTAATCTAAATTAGTGCCCATTATAGATAAAATATCCAAATGGGGATTACTTTAACAT
ATAGTAATTAAAACACTCAGAAGATTAATTTTTAAGGCATTGAAAAGAGTTACCTCAATT
CAAGTCATTTTTTTTCCACAATATAAGATATTCTAACAAATCCCATTAATTATTCTTCAG
CTACTACCAAAAGTTAACCAAACCTTACGGAGATGCACCAAATCAATCAATACAGCCGCA
GACCTAAGACATCCTGACACTGTGTGAGGTATCTGTCACTTCTCACAATATCTCCCCTGG
GACGGAAGCTCAGTAGAAGGTCCCATCTTGTGTTAGCACCCATGCTCTGAGCTATGACTT
CAGTTGGCTTCCATGTTGTCATCGCCTTTATGAAATACGCATAGACACAATCACCCTGTA
GTTCAAGGACTTGAATAAGGACTTGCTGAACTCATAAGAACACTGATAGAAAGGATATAA
GCAACACCTGAGAAGGCTCACTGATCATTGTTTACAGCCAGAGATCAAGAAGTGGAAGTT
TCTGAGTCATCCACACTCACTAATTTGTTTTGTGTTTGGAATTCTATGCATGGTTTGTTC
TCTTTATTTGTTATTTTTATTTCTTTCCAAAGATACCAGAATTTTTGCTAATAGTAATGA
ATACTCTGTGTGGAGTATTCATGATTTTTAAAATAAGTATAATACAAGAAGATGTCACCA
AAACCGTACATACCACTTGATATCACCTGTACAGCATGTGATAAATGCTTTGCTTTCCAC
ATATAAATAAACAATTCCAACTCTAAAGC
3' upstream sequence
ACATTGATCCGGGAGAATAAAGTTAATAGTTTGCGAATAATTCCTAAACATGCAGACAAA
TCCTTTGTAGTGCTGATTGTACTTCAGGTGAAAATTTCTTCACTCAGGAGACAACTGCTT
CCAGGTATTTCTGTGTCGGTTTACTTAAACTATATTGGTTAGTTACACAAAAGTGTGAAG
TGATTGACACCTACCAACGGCAGCATTTAGTGTGGTTTTCATACATGCACTGTGACTTTT
CCCTGAGCATAGTGGGAACTGTGGGCCACTGTGATGCACTGTAGGTGACCTGGTCAAAGA
CCTGTGCTCCAATTCTAAGATCCAAATCTCCCATGCTACCTCTTTCTAGTTTTTTTCCCC
ACATTTTTGCTGTTAAGGGAATTGCTTTTTAATCTTTTGCTAATCTCTGAGCTTCAAGCA
ATTAGTTCTAAATTGCTAGATGCACCATGTGCCCTCTCTACTGCACAGGCATGGTATGAG
GTATTCTCAGAAAATGACACATTCCTCTTCCATCACAGCTGACAGGAATACTTGGGAAAA
AGGACACAAATTTATGTATAAAACTCTTCTCCCAACCAGTTATGTTCTCTCACCATGGCT
GTGTTATGCAATTGGAGGCATAAGAAAATAAGTGCTTTCTTTAACTATGGAGAAAATCCT
TTCAACAGTAAGAAACAGTGTTTCTCAGAGCATCAAAAAATACTTGGGGCTGGAGAGATG
GCTCAGAGGTTAAGAGCACTGACTGTTCTTTCGAAGATCCTGAGTTCAAATCCCAGCAAC
CACATGGTGGTTTACAACCATCCGTAATGACATCTGTCACCCTCTACTGTTGTGTCTGAA
GATAGTGTACTTACATATAAATAATAAATAAATCTTTAAAAAAACAAAAAACCTTGGAAA
GCCAAGCTCTGAAACCCCAAGTGTAGCCACAGCCAAGCATGCAAACAGCTTGCTGCCTGC
CAGCTCACAGCACCTCATCTTTCACGTGACTCATGGAGAT..........

Sequence Detail Report

Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000141339
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 185 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information