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Target CDS Information

Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Cross Reference
Clone_based_vega_transcript AC103635.1-005
EMBL AK034391, AK081222, AK081622, ...show all
Fantom 9330002C10, 9330185L09, C030011I11, ...show all
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name A830018L16Rik-005
OTTP OTTMUSP00000067362
OTTT OTTMUST00000085553
protein_id BAC28694.1, BAC38170.1, BAC38273.1, ...show all
UCSC uc011wii.1
UniParc UPI00000EA996
Uniprot/SWISSPROT Q8BZJ8
Vega_transcript AC103635.1-005, OTTMUST00000085553
Vega_translation 178714, OTTMUSP00000067362
Definition protein_id:ENSMUSP00000139635
translation:
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGR

Chromosome 1
Length
Position(start - end)
173,980
11,414,569 - 11,588,550
Orient to Chromosome plus
Link Location : (1:11414569-11588550)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000141512
Reports
substitution
cSNPs3
Insertion249
Deletion349
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 11518591 (p.Thr77Thr), 11588451 (p.Ala195Ala), 11588532 (p.Ser222Ser),
non-synonymous substitutions
B6 transcript
(ENSMUST00000141512)
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGR*
MSMv4 transcript
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGR*
homology100.00 (228 / 228)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000141512
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TATCAATAGTGGCTAATAGCCCAATTCCTCTAGTAGATTTCGTGTATGTG
AATTATTAAAGGCAATTATTATAATACTTCCTGGAACAATCCATTCTCATCTTAACTATT
GCACAATGCTTAGATAATTTAAAACGGAGAGAAAAAGCTTGGACAGATACAGGTCACAGA
AACCTGAACACAGTGCAGAAAAAGAAGAAATCTACACTGTCGCAGTTGGTTTTAAAGAAA
CCCGTGCCTATTATTGTAGAGACAGCCAACAGTTTTAGTATAAACGTTCTGATTTGGCAA
TACAAAATGGTTTAGAACCAGACAACTCATCTTTGGGGTTTTAGTGCTTTATATCGTTTT
TTGGTTTTTTAAATGCAAAGAACTCTACACGGAACCTTGTGATAACTGCAGATCTTAACC
TTGAAAAGTCGTCTCATAGTAAGAAGGTATGAGGTAAAGTTGATGTGCTTCTGAAGTATC
TGGAGGAATAACTGTTGGGTGGGAGCTCAGAGCCCCTGAGCTGTAGCCAGAGGTGTAGCA
GACAGAGCTGAAGGTGTAGGCAAACTTGGAAGCAGAGAGAGCTGGCTTGCTTTTGTTTCA
TCTCCCTGCCAAATGCCTAAGGGTTGCTTCCAGCCTTTGGGTGTCTGTACTTCGGGAATT
TTCAATCAGTTCTCAGGCAGCAACGCCGGTTGTGGCTGACTTGCTCAAGGCCAAGATAGA
TATATCTGTTCCTTTCTTTTTTCTTTTTAACATAAGCAACTTTGTTTTCGCGGCAAAACC
CACCCATAGTTCTCATCTCCGGCTTTTTCTCATCCCAGGCTAGTGAAGGCAGAGCGCTGG
GCCAGGAGAAGATCAAGCTGAGTGGTTTGGAACTGCGGGTGTAGCTGCCAAGGAGTAGCC
AACAAGCACCAGATTTATGTGCACTTTGAAAGAAGCACCTTTACCATTGGCTTTTTGAGC
GGCTCTGTCGCTAGGGAGCGAGCACCGCCTCGGGGAGCAGCTTGGGTGCT
1 EXON 1 11,414,112 11,414,637 - 0 526
GGTTCCTGGCAGCCAGGAGCTGGGCGCACACCCTGGCGCGCTCTGGGCGGTTCCGCGCGC
TGTCGCCCCTGCGGCCCGCGCGGTCCCCCGCTCGGCTCGCGGAGGCGCTGCACAGACACT
CGCCTTCGGCCACCGGCTCCTGCTGCTGCTGCCGCCCAGAGGACAGACCAGCCTCTGCCC
GCGATTTCGCCTCGGCGGCGGCGCTGCGGAAAGCGGAGAGCGGGTGGGCGCGAGCTGCAG
GATGCGATGTAGTTCTCTCCTTGCCTCGGAGTTGTCTGAGTTGGTAGAGCCTCGCCCGGG
TTCCCTGAGCCCTGCTCCCTTCGGGCTCGCTGCTAACGGAGTTGCTAGCCATCGCTGTGC
CAGAAAGCTCAGGCTCGGAGCTCCTGCCCTGGGGTAGAGTAGAGCTGTCCCCAGCCGAGG
CGCATTGTCTTCTCTCTGCTGACCCATCTGTTTTCTCATGGCATCTCGTCAACAAACCCG
AATCCAGGCTTACCTGGAGAAAAACAAGATCGGTCCTCTGTTTGAG
INTRON 1 - 2 11,414,638 11,511,917 97,280
GTAAGGAGCCCTGGTGGGGAATGGT..........AATGCTTGTCTTGTTCTGTCTTTAG
2 EXON 2 11,511,918 11,512,065 0 1 148
GAATTAATGACCAAGTTAATAACTGAGACACCTGACCAGCCAATTCCATTTCTCATTGAC
CATCTTCAATCTAAACAAGGAAACCAAGGACAACTGCAAAGAGCTTTGTCAGGGTCAGCA
GCTCTCTGGGCAGAAAGTGAATCATCAG
INTRON 2 - 3 11,512,066 11,518,577 6,512
GTAATTGGGTGGAGGAAACCAAACT..........ATCTGTTTATATTTTGTTTTAACAG
3 EXON 3 11,518,578 11,518,709 1 1 132
AACCCAAAGGAACAAGAAGGGATTTTAGAAGCTATGATAAACCTTGGCAGATGAATGCAA
AGAAGCCTAAAAAATCAAAAAGTGATCTGGCTGTATCTAATATTTCTCCTCCATCACCAG
ACTCCAAATCAT
INTRON 3 - 4 11,518,710 11,545,153 26,444
GTAAGTTTGTTACTTAAATGTTATT..........AAATAACCGTTTCTTTTAAACATAG
4 EXON 4 11,545,154 11,545,282 1 1 129
TGCCAAGGTCAGTAGACCATCTTAAGTGGAACTGGCGGACTAAACCACAAAGCCGTGATT
TTGATGAATTGAACCACATCCTTCAAGAGAGCAAGAAGCTGGGGAAAGCCCTTGAGAATC
TCTCTCGAA
INTRON 4 - 5 11,545,283 11,562,962 17,680
GTAAGTTCGTTTTCTTGACAATAAT..........CTTGTAAATCTCTTTTGAATCCCAG
5 EXON 5 11,562,963 11,562,991 1 0 29
GTATCGCGATTTCAGATGAACTTGATAAG
INTRON 5 - 6 11,562,992 11,588,373 25,382
GTAAGCTGTGCTCTGTATCTAAAGA..........GCTTTTTCTCTCTTTGCACCTGCAG
6 EXON 6 11,588,374 11,588,571 0 - 198
GAAACATTGGCTTTCAATTCCTCTCTTCTGAGACCTCGTGTGATTGGGGAGTGGATCGGC
AGGGCAGAAAATGATGCCGATCCCCTTGCAGCTGAAATGCTGCAGCCGCCGGTTCCGCGG
AGTAAGAATGACTCATGGGAAAGTGAAGACAGCAGCTCTAGTCCAGCAGGAAGGTGAGGA
TCTCCTTCGTGAATCCGT
INTRON 6 - 7 11,588,572 11,596,150 7,579
GTGAGTGCTCATTAAACAGGAGAGA..........AACTAACCTATCAATATTTCTTCAG
7 EXON 7 11,596,151 11,596,317 - - 167
CTTAAAGATGGAGCCCAAGACGAAAGGATTAAAACAGCAGCAGCAGCAGCACAAGAAACT
CCTGGCTGCAATGCTTTCCCAGGACTCCTTCGAGTCCATCCATAGCCCCACACCATCTGT
AATAGAAGAAGACATTGATAATGAAGACGATGCAATGGAGTTGCTGG
INTRON 7 - 8 11,596,318 11,747,964 151,647
GTAATTTTAAAAATTAATAACTTCT..........TCTGTCACTGTTTGTGTTGTTGCAG
8 EXON 8 11,747,965 11,748,091 - - 127
AAAATCTGGATGACTTAAGGATGGAGGGTGTAACCACTCTGGTACTTTCGGGGAGCAAAT
TTAACCAAGGTCGTCCTACTCACCCTGCCGAGCCACAGGCCAAAGTCACACTGAACATCT
GTTCAAG
INTRON 8 - 9 11,748,092 11,798,480 50,389
GTGTGCCAGGTAAAACTTATTCTTG..........CCAATGATGATTTTTAATTATTTAG
9 EXON 9 11,798,481 11,798,566 - - 86
GCTTCAAGGAGACAACTTGATGGAAAGAACAGAAGACACACTACAAATACTTCATACTCC
AGATGAGATAATCCCAGACTCATTAG
INTRON 9 - 10 11,798,567 11,829,814 31,248
GTAAGTTTTAAATTCAAAAGTGTTT..........CTTTTATTTTTAAAAATTAAAATAG
10 EXON 10 11,829,815 11,829,891 - - 77
ATTCTTTACCTGGGACAGAAGAAACTCTTATGGAGGAAGGTGAAGATTTTGAGAAAACAT
CAAACTTAACAGAACCA
INTRON 10 - 11 11,829,892 11,933,543 103,652
GTAAGTATATTAATTTGTTTTTGTT..........CTCTCCAACCTCTGTTTGCCTCTAG
11 EXON 11 11,933,544 11,933,740 - - 197
GGAGAAGCCTCTAGTGGAGCACACTCTTTGAAATCCTACATGGAAGAAGTGAGTTTCTAG
GGACTCTACCATAGCATGTCATCAGTCTACACGTGAGATGAAGAACGAACTCCGCTTTCT
CCTTCTATCTTTTCAGTTCCTCATACATATCCTATTCACTGGCCATGTTTAGAAAAAGTA
CAATAAATGATGTTATC
3' upstream sequence
AAAATTGCTTTAGTTCCTCATTCATAGAGGGATACTTCCTATCAGTCCATTCATCCTGAA
AATGGAGGAGAAAGTGCATGAACCGAGTGCTGTCATATGTTTTCATTCACAAAACATTAG
TTGTATATGTATAATGAGAAACACATGTTTTGTGCCGGGCATGAGGACAAACAAAAGGAG
TAAAACCAGAAAGACACAGTCCTGGCCTCTATGAGAAGAGCAGTCATGATAGGGCAGCAC
CCATTGATGTGCACCTACTAACATGGAAGCCTTATATTCTTGGCTTTACTTGTGAAGACA
CTGAAGAGTGTTCTGTGCCATAGAGCTTTATTCTGTGTCAGAACTTTTCCAGCATCCCTA
AGACCTGAAGCAAACTCATGATGCTCATGAAGAAACCAGCTTGAATCTGCTAGGCGGCAA
GGCAGGTTAGGAATAGGTTCCAATCTTTGGGAGGAATGCCAATTCTCAACAGGAACTGAT
CTTCTGTGCTTCTTCCCAATTCAAGAGGCCATTTAAATGACATCTGAGCACTCTGTATTT
CCTACCCAGGATGGTGCATGGATACTGAAAATCTCAGTTCCTAGAATCACTCAGAGAGGA
ATGTGGAGTGTGCAGTCTCTACAGGTTTGCCTATCTTCCCAGAGATAATTGGAGCTTTTC
AAAAAAGCACAGAAGGGAATAACAAAATGATAGGAAGGAAATCACGGGGAAGATGTTCAG
GGTCACAAGCATCCAAATAATTGGGCAAAATGTGGGAGGATTGAATACTAAGTTTCAATT
TAATGGATCTGATGCAAAGACTTACAGTATATTTGAACAATTAATATTATCCACAGAAAT
TGGAGATTTTGTGGTCACTTACGCTCTTGGTCCCAGGCTTAACATGTACTGATGGGACTG
GACTTCCACAAAAAGGCTGGAGATGCCTCTTGCTTCTGGTGCAAGGCTGTGAAAGGAAAT
CGCTGAGTCATGCATGCATGGGCTAAGGGCTACATATCAA..........

Sequence Detail Report

Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000141512
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 228 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information