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Target CDS Information

Gene Symbol (Gene ID) Kdm1b (ENSMUSG00000038080)
Cross Reference
GO GO:0003677, GO:0005634, GO:0006349, ...show all
goslim_goa GO:0000003, GO:0003674, GO:0003677, ...show all
MGI_trans_name Kdm1b-002
OTTP OTTMUSP00000029815
OTTT OTTMUST00000060968
UCSC uc007qhu.3
UniParc UPI00015AA07E
Uniprot/SPTREMBL F6V3V2
Vega_transcript Kdm1b-002, OTTMUST00000060968
Vega_translation 214419, OTTMUSP00000029815
Definition codon_start:3
protein_id:ENSMUSP00000114999
translation:
XGKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIV
RGLVRIRCVQEVERILYFMTRKGLINTGVLTVAAGQHLLPKHYHNKSVLVVGAGPAGLAA
ARQLHNFGMKVTVLEAKDRIGGRVWDDKSFKGVVVGRGPQIVNGCINNPVALMCEQVSAR
SWDHNEFFAQFAGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVTTTDGMG
HSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQG
ADFFGHVPPSASQRGLFAVFYDMDSQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRE
LFKEQEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATNR
HFPQTVTGAYLSGVREASKIAAF

Chromosome 13
Length
Position(start - end)
19,951
47,063,006 - 47,082,958
Orient to Chromosome plus
Link Location : (13:47063006-47082958)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kdm1b (ENSMUSG00000038080)
Transcript ID ENSMUST00000143518
Reports
substitution
cSNPs5
Insertion18
Deletion27
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num0
synonymous substitutions 47063022 (p.Cys5Cys), 47063121 (p.Ala38Ala), 47064627 (p.Leu123Leu), 47079257 (p.Leu350Leu), 47080570 (p.Thr409Thr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000143518)
GKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIVR
GLVRIRCVQEVERILYFMTRKGLINTGVLTVAAGQHLLPKHYHNKSVLVVGAGPAGLAAA
RQLHNFGMKVTVLEAKDRIGGRVWDDKSFKGVVVGRGPQIVNGCINNPVALMCEQVSARS
WDHNEFFAQFAGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVTTTDGMGH
SAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGA
DFFGHVPPSASQRGLFAVFYDMDSQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILREL
FKEQEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATNRH
FPQTVTGAYLSGVREASKIAAF*
MSMv4 transcript
GKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIVR
GLVRIRCVQEVERILYFMTRKGLINTGVLTVAAGQHLLPKHYHNKSVLVVGAGPAGLAAA
RQLHNFGMKVTVLEAKDRIGGRVWDDKSFKGVVVGRGPQIVNGCINNPVALMCEQVSARS
WDHNEFFAQFAGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVTTTDGMGH
SAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGA
DFFGHVPPSASQRGLFAVFYDMDSQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILREL
FKEQEIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATNRH
FPQTVTGAYLSGVREASKIAAF*
homology100.00 (443 / 443)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kdm1b (ENSMUSG00000038080)
Transcript ID ENSMUST00000143518
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACATTTCTAAAATGCTATACTGAAGCCAATCAGTTGAAAACTGCATGTGT
AAAGAAACTTACATTAGTGTTGGAACTAACTAGCAGAGTTGTCGGCCACGGTGACTAACT
AGCAGAGTCGTCGGCCATGGTGACTAACTAGTTTGAGTGCTGGGACCATTCATCCTAGCA
TTCATGAGGCAGAGACCAGAGGCTGGTGGCTCTGTGTGAGTTCAAGGCCAGTTGTTGTGA
TTATAATAGGTGTGATCTCAATTCCCACGAGAGGGGAATGGTTGAATAGTAAGACACAAA
GCCACTGAATTTAATATAGTCATTATATTATACATTATATTATACATATATACATATATT
TTTCATATATAAATAGTTATTTAACATAAAATCAAATATAAATATAAAGTTATTTAATAC
ATGGAAAAACATTTAGAATACTGTAAAACCTTTTTTTTTTACTTAAGAAGTAGGTTTGAA
GACAACACCTTTATAGCATTTGTCCATCTTTGAGAAAACTAGTGTTTAGAATGTTACCAT
TGGCTGAGTCCTGGAATGTGGCACTAGTGTGGCTAGAATGTTACCATTGGCTGAGTCCTG
GAATATAACACAACATGGGACATGGGGCTTTGGGACTGTTTAATTTTGTAATCAGAAAGT
GCCAAAGGGTGTTTGGTTTTTTTTCTTTTTAATTCTTAAAATTCCATTTCTGTATCTGTA
CGTGTGTACCACAGCACATATGGGAGGTCCAAGATCAGTTTAGCAAAGTTGGTTCTCTCC
TTCCATATGGTCCTAGAGATTGAACTGAGGCCATCGGGCTTGGTGGCAAGAATCTTTACT
CATTGGGCCGTCTTGGCCACCCCCTGTGTGTGTTGAGGACGTGCCCTCGTGAGTAGTGTG
CACGTGTTTCTGGCTGTTTTGCAAGTCCCAGCTTGCAGAGCTGCTTGCCTGTGTGCCGTC
AGTCCTAGGCATGAACCGGTACTTCCAGCCGTTCTACCAGCCCAACGAGT
1 EXON 1 47,063,006 47,063,142 - 0 137
GTGGGAAAGCGCTGTGTGTGAGGCCAGACGTGATGGAGCTGGATGAGCTCTACGAGTTCC
CAGAGTATTCGCGGGACCCCACCATGTACCTGGCTTTGAGAAACCTCATCCTCGCGCTGT
GGTACACAAACTGCAAA
INTRON 1 - 2 47,063,143 47,064,053 911
GTAAGTAAGAACGTAGCAGCAGCAG..........GGTTTTGGTTTTGTTGTAAACACAG
2 EXON 2 47,064,054 47,064,230 0 0 177
GAAGCTCTCACCCCTCAGAAGTGCATTCCCCACATCATTGTCCGGGGCCTTGTCCGCATC
AGATGCGTTCAGGAAGTGGAGAGGATTCTTTACTTCATGACGAGGAAAGGCCTCATCAAC
ACAGGCGTTCTCACGGTGGCAGCCGGCCAGCATCTTCTTCCTAAACACTACCACAAT
INTRON 2 - 3 47,064,231 47,064,570 340
GTAAGCGGCTGGATGTGCGGTAGGC..........ACTGGTGTTTTGTTTCTTTTTGAAG
3 EXON 3 47,064,571 47,064,645 0 0 75
AAATCTGTTCTGGTTGTTGGGGCTGGTCCAGCAGGCTTAGCAGCTGCTAGGCAACTACAT
AACTTTGGGATGAAG
INTRON 3 - 4 47,064,646 47,067,444 2,799
GTGAGACTCTGCCGGGGGGAGCGGT..........TACATTCCCCAATTACCTTTTTTAG
4 EXON 4 47,067,445 47,067,582 0 0 138
GTGACTGTCCTGGAAGCCAAAGACCGGATTGGAGGCCGAGTATGGGATGACAAGTCCTTT
AAAGGCGTGGTAGTAGGAAGAGGACCCCAGATTGTCAATGGCTGTATTAATAACCCAGTA
GCACTAATGTGTGAGCAA
INTRON 4 - 5 47,067,583 47,073,710 6,128
GTGAGTGTCTTGAAAACTTGTAGAC..........CCTAACACCTTGTGTTGTTTCCCAG
5 EXON 5 47,073,711 47,073,842 0 0 132
GTGTCTGCTCGCTCCTGGGATCACAATGAATTCTTTGCCCAGTTTGCTGGTGACCATACC
CTCCTCACACCAGGCTACTCCACTATCATTGAGAAACTGGCTGAAGGACTAGACATTCGA
CTCAAATCTCCA
INTRON 5 - 6 47,073,843 47,074,353 511
GTGAGTATGGATGGGAAGGAGGCTC..........GTTTCAAAACGTTTTTCTCGGACAG
6 EXON 6 47,074,354 47,074,428 0 0 75
GTGCAAAGTATAGATTATACTGGAGATGAAGTGCAGGTTACCACGACAGATGGTATGGGG
CATTCTGCACAAAAG
INTRON 6 - 7 47,074,429 47,077,382 2,954
GTAGGTGCTGAGAACCTCCTGTGGT..........GTTACCTGTTCATTGTTTCCCACAG
7 EXON 7 47,077,383 47,077,499 0 0 117
GTGTTAGTCACTGTGCCATTGGCCATACTACAGAGAGGTGCCATCCAGTTTAATCCACCA
TTGTCAGAAAAGAAGATGAAAGCCATCAACAGCTTGGGTGCAGGCATCATTGAAAAG
INTRON 7 - 8 47,077,500 47,078,267 768
GTGACCTAAGTTTCCCCTTAGCCTC..........AGCCATTTCTCTGCTCACTTTCCAG
8 EXON 8 47,078,268 47,078,393 0 0 126
ATTGCCTTGCAGTTTCCATATAGATTTTGGGACAGTAAAGTTCAAGGAGCTGACTTTTTT
GGCCATGTTCCTCCCAGTGCCAGCCAACGAGGCCTCTTCGCTGTATTCTATGACATGGAC
TCTCAG
INTRON 8 - 9 47,078,394 47,079,182 789
GTAAAATTCTGTGGTGTGGTTTGAG..........TTTCCCTGTGTGCTTGCAAAAGCAG
9 EXON 9 47,079,183 47,079,299 0 0 117
CAGAGTGTGCTGATGTCGGTGATCACAGGGGAGGCAGTGGCGTCCCTCAGGACCATGGAT
GACAAGCAGGTGCTACAGCAGTGCATGGGCATCCTTCGGGAGCTGTTCAAGGAGCAG
INTRON 9 - 10 47,079,300 47,080,435 1,136
GTGAGGCTGGAAGCCATCTGCATTG..........AATTTGTTGTTTGTTTGCACATAAG
10 EXON 10 47,080,436 47,080,588 0 0 153
GAGATCCCAGAACCCACAAAGTATTTTGTCACACGGTGGAGCACAGAGCCATGGATCCAG
ATGGCATATAGTTTCGTGAAGACCTTTGGAAGTGGCGAGGCCTATGATATTATTGCTGAA
GAAATACAAGGAACGGTCTTTTTTGCTGGTGAG
INTRON 10 - 11 47,080,589 47,082,874 2,286
GTACATATCTTGACACCAAGCCCAA..........AGGATTCTTCTTTTCCTTCCCACAG
11 EXON 11 47,082,875 47,084,596 0 - 1,722
GCAACAAACAGGCATTTCCCACAAACTGTTACTGGGGCATATTTAAGTGGTGTACGAGAA
GCAAGCAAGATTGCAGCCTTTTAAAAAGAACTTGTATGGACCTAACGTTCTGTATCCCAA
ATGGAAGTTTGAAGCCAAGTTAAACTTCAGTTCTGCAAGAGAGGGGACTCTGTGACTCTA
TAGTAAAATTGAAATGTTTCTGGTGATAGGAAAATGTAAACCCATTTCACTCTTCTGCAA
CCACTGACCCTCAAAACCCTTCCAGGCACTTATCTTTTATTGCATTTTTCCATCTGTCCT
GTGGGTTTCAGAAGGTGGCACCGTAGATCATGGAGGCCTTGGTTCTGGATGGGATGCCCC
TCAGATTGGACATTCTGGTTGGCAGATTACTTTTCATATAATGTGAAACCAGGTAATCCA
GCAGGCGTCACTAGCAAACTTGAGAAAGCCGTGTGCTTTTCTGTGACAATTTATCAGTAC
CTTTACCAATGAGCCTTAATATTTTTACACAGTTCCAATTTTGGGCTTTCCTTAAAATTT
ACAATTCTTTTTTGATACGGATTTTGACGTGATGCTTCTAGGCTATTTTATACTACCTAA
ATTTCTTTTCATTTTCAAAACTTAGATTCGGGCATATTTTGATATTTTAGACCTGTACAA
CACTCATCAGCAACACAAGACTCAACCTCTTAACAGTGAATACATATGTGTGCAAACATC
TCAATGGATACAGGATGTTTTCAAACTACAAAACCATTTTTGAGTGGGCAGCACACTTGA
AATTTAGCAAAAATCTTGTTAAACTTGAAAGCCCCTCTTTATTTTTAAAGTTGAATTTTA
CAGTGTCTAATATTTTACATAGTTGTGAGTTTCCCATAGGCAGGTCCACTGGAAAACTGC
ACGAAGTCTCAATCATCTTAGTACATACACAGGATATTACTTTATAAGCCATATGTTAAA
AGTCTGAACGTGGCAAAACTTACTCTTCCACTGAAAAGACTGTTTAATAAGCATGGGTTT
TCAGGGTCTTTGGGATGCCTATTCTGCCAAGAAACTTCAGTTGATAGACTAGAAATATAC
TTTTGTTTTAAAAAGTCTTTAAACAATTCTTCTTTGAATTATATTGGTCTGCTTTTAAAA
GGGAGCTACAAAGGACTTTACAGACACTTTTTGAAATATTAGGTATTTCTGAAATTCAAA
TTTAGCTTAAGAAAAGATCTTATACAAAGAATGTACAGTGAAGTGTACTTTAGACAGTCT
AGATACACTCTTCTCCCCTGTCAAAGTACAATATAAAGCCAATGGCAACATATTTAAAAG
TTCATTATTCACTGTACTTAGAGGTTATTTGTTGAGACTCATTGGTACTGATAAGGGAAG
TATTCTGCTTTCAAGTGTAAGTAATTAAAATGTTTAGCATGTGTGAAACGGTAAGTGCAC
AATGTTAAATGGCCCTTCTAAGTCAGTTAGTTTCTAGGCACTTGAGCTTTGTGTGCTATT
TCAAGTATAAGTGAGTAATTTTCTCCCACTGAGTGACATACTTAGTTTCATATTTGTTCT
AAAGGAACTATGGTACTTTGAGTTATGTTCTCCAATCTCTGAGACTTTTGTTAATGAGCA
CAAGTATACTTTGATTTAATAACTACATATCATGAATAATTGGTTATGTAAAACTGCTTA
ATAAGTAGACTTTTGCAAATACCCGTAATAAATGGTCATAGC
3' upstream sequence
ATCACTGTGTCAACCTCCTTTCCAGTCCTTTAAGCTTCTTGGTCATAAGCATTTGCTACC
CTATTTCCTTAATAGTAAGTGGTCAGCATACAAAACTAATTCTGTGTCAAAATGGTCATT
TATTGTCATAGGATAGAGTAGGAGAGAAATAACACTTAAGCAGACAAAGATTAAATACAA
GACACTTAAAACATTGATTTATTCTTTATTGTGAAGATTTATGACAAATTGCTTAAAGGC
CAATATTTTTAGTCCCCACTTAATTGCTTGTTCCTCACTTTAAGCATATTGAAGTCAAGT
ATGTGAAAATACCTGTTAATGCTCAAATCTGATCTGTGATGGGAAGATTAAACACTCAGC
TGGTACATCTAGTGTCACTTTATCAGGCAGCATATTATAAATCAGAAATAGGTTTTTAGG
ACAGTCAAAATTTAAGGGGCAGTCCATGTTTCATCACTTTAAAAATCAAACAGCCTTGAT
TCTGTAATACTTCAATATTAATGTATGGTTTTTGATAAATACTTTCAGAGATACCTATGT
TGTCCACACCAACTCTGGTTACACTTGATGCTTTTAATCATAATTATGAAGGTAACCAGG
TTTCCTGTATCTAATATATTTATATGGTCAACAGTTTACTACTGTCAGTTCACTTATATA
TAAATCCATGTGTGCTCACGCCTTCCCAGTTTTTGAAGCTGTGATGTGTTTATCCTCATT
ATAAAATTTCTATGACACTTAAAGTTAACACAACCACATTGATGACACTTTGAGGGCAAA
GCAGAACTAGACAGTCCTCAGTGCCATCACCACTGAACTCTGCGCTGTCACTGCTGCCTG
GATGAACACTGACATTTAGTTACAAGTTTAAAGACACAAGAGTTTAAAAAATTGATTTGC
ACAAAAGAAATAAAAAAATTATATACAACAAATTGGTTTTTAAAAATACAAAAATAACAT
CTGTCACTTCTGTCATGCCAACAACTTGACATATATACAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Kdm1b (ENSMUSG00000038080)
Transcript ID ENSMUST00000143518
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 443 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information