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Target CDS Information

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Cross Reference
EMBL AF459099, AF459100, AK015087, ...show all
Fantom 3830432A14, 4930404M18
GO GO:0003725, GO:0005730, GO:0005783, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Stau2-017
OTTP OTTMUSP00000047068
OTTT OTTMUST00000086845
PDB 1UHZ
protein_id AAH10300.1, AAH25118.1, AAN37928.1, ...show all
UCSC uc007ajr.2
UniParc UPI00000EAC2A
Uniprot/SWISSPROT Q8CJ67
Vega_transcript OTTMUST00000086845, Stau2-017
Vega_translation 178765, OTTMUSP00000047068
Definition protein_id:ENSMUSP00000119130
translation:
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSPAHEVMIVGITHYSADNFF
LHWCL

Chromosome 1
Length
Position(start - end)
25,816
16,460,316 - 16,486,133
Orient to Chromosome minus
Link Location : (1:16460316-16486133)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000144138
Reports
substitution
cSNPs3
Insertion43
Deletion52
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num2
synonymous substitutions 16463087 (p.Thr74Thr),
non-synonymous substitutions 16460375 (p.Met107Val), 16460389 (p.Pro102Leu),
B6 transcript
(ENSMUST00000144138)
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSPAHEVMIVGITHYSADNFF
LHWCL*
MSMv4 transcript
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSLAHEVVIVGITHYSADNFF
LHWCL*
homology98.41 (126 / 126)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000144138
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GACAGCTTTTTTTTTTACATTTTTTCATAATCTGTTCATTGAGTGAAGAG
AGAATAGATTGAAGGCAGAGCGAACGAACTTGTGGAAAGAACAGCCATGGAAGGCTTGTT
TCCCTGATGTGAAGGGCCTGTAGTCGTTTGTATCACTGAACACCTGAATGAGGCCTAAGT
AGCTAGAAACCATTAATTAAGGGGTGGTCCCCATTTAAGAAGGAATCCACATATTTGAGA
AAACTAGTGGAAGTGAAAAGTGAGAAAGGCACACGGGAAACATGAGAGACAAACGAAGAG
CTTGCCTACACTGTATCACCGGAAACTACCATGTCAGGCTCTAGCTAGAGAGCTTTACAG
GTATCTCGCCTATACATACAGTATCACGTTTTTGTCTCTTTAAAAATTGTAAATCAGTGT
ATAAGGTAATAGATCCACAAATACTGCCTCATTTGTAGAGTTGGTTTTAAAATATGACTG
AAATCACAGGGCTCACAGACATATCCCAGGCAGACAAGCCATACCAAGGAAACCCCAGGA
AGAATAATGCCAGTCAGAATACACTAATAGTTCTATTTCTAGACTTCTTTTTCATATGAT
TTTTGGTGCCACTTATTTAAAATCCATTGGTCTTAACTAGGCTGACGTTATCTGGCCATA
CCTAACCCATATCTAAACCAGGACAAAAGAACAAGTAATTTGAGTTTTTTAGCACTCTTC
AAAAACCAAGGATCTAGGACAGTGTTTTAAGACGATCCTCATTTTTGGCTCTAAAGATTT
TTTTTTTTTTGGTACGGGCACACAACTTTAATATATTTATTATTCATTTTTTCCTGATGA
ATGATGTGGGCCGTAGAGCAGGTGATGGGGGCTCGCTTGCGCTGCTTGCTACCCTCCTCC
CCCTTCTTCCTCCTCCAGTCTAGAAAGGTGCAGGATCCGCCGAATCCTACGTCGCACCGC
AGTGGAACGGACGCGGGATGGTCGCGCGTCCCCAGCTAGGCAGAGGCGGG
1 EXON 1 16,520,001 16,520,020 - - 20
CAGTCAGCGAGCCGGGAAAG
INTRON 1 - 2 16,509,409 16,520,000 10,592
GTAGGAGCAGAGCGTCGGGGACAGG..........TTATTTCTTTGTTTTCATTTTCCAG
2 EXON 2 16,509,342 16,509,408 - - 67
TTTTGTGGAGCTGTGAGGGATACGGAAGTTTGATCAATATTGTCTTAACATGCTTCAGAT
AAATCAG
INTRON 2 - 3 16,486,151 16,509,341 23,191
GTGAGTATGATTAAGGCGTGTCTTA..........AACTTTACAGCCTTTTTATTTGCAG
3 EXON 3 16,486,020 16,486,150 - 0 131
CTTCTCTCCACGATAAAATGGCAAACCCCAAAGAGAAAACTCCAGTGTGTCTGGTAAATG
AGTTAGCCCGTTTCCATAGCATCCAACCCCAGTATAAGCTTCTGAATGAAAGCGGGCCTG
CTCATTCGAAG
INTRON 3 - 4 16,463,195 16,486,019 22,825
GTAAGGTTACAAAGAGAGGCGGTGA..........GTTTTCTCTATCTGGTCTTTCCAAG
4 EXON 4 16,463,035 16,463,194 0 1 160
ATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGAGCAGTATA
AAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACCCTTCCCAAACCA
GTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAG
INTRON 4 - 5 16,460,420 16,463,034 2,615
GTATGGCATTGGTTTGTTTCCTTCC..........GGAGTTTTCCTTCTTTCTCTTCCAG
5 EXON 5 16,460,213 16,460,419 1 - 207
TGGGTAAGCTGAAGGAAACAGTTCTGAGTCTGGCTCATGAAGTTGTGATTGTTGGAATCA
CACATTACTCTGCTGATAACTTCTTTTTACATTGGTGTTTGTGAGATTCATCTGCATTGT
TTTTAAAGTGATACTGCATTGTGTTTACAATGATAATGGCTGTATAGCATTCCATTGCAT
GAATAGACAGTAATTTGGTAGTATTGA
3' upstream sequence
ATTGTTTGCAGATTGGACACTTGGAAATAATACTGCTGTAAATATTCTTGTATATACACC
TTTCTGTTGGGAGTGAACCTAGGATCATCAGTACTGCTGGGTAATAGGTTTCCATGTACT
AAGAATTAACACACACGGCCAAGCTGCCACTGGTGTACCCTAGTAGCAGTTAGGAGGGCT
CTCTGTGGTCTTGTTCATCATTTGACTTTTTTAGCTTTTCATGACAGCGGTGTTAATACT
TCATTGTGGTTTTCATTTGCATTTCCCTATGGATGATGAAGCTGCTGGTGAAGTGTGATC
GCTCGTCCATGGTGTCATTTGTCCACTGGTGTTAGAATAGTCTCTTTAAAAAGGGATGGT
TGGGAGTTACATTGTTTAAAAAAATATGTTTTCTTTTTAATGACGGGGATTTTGTACATA
TTCTAGATTCACATAGTTTGTGAGATATGTATATTCCAGGATATTTTTCTGAAATATTAC
AGAATATCTTTCAAAAATTTTTTGTTTGTTGTTTATTGAGACTAAGACTGTGTATTTCTA
GCTGTCTTGTAATTTGCCAAGTGCTACAGGCTGGCTTCAAACTCACAGAGATCTGCCTGC
CTCTACCTTTAATGCTGGTACTAAATGTGTGTGCTACCATCCCTGACTTCTTTTGAAAAA
AAAAATTATTTCTTTTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCA
AAAGTCCCCTATACCCTCCCCCGCCCTGCTCCCCAACCCACTCACTCCCACTTCTTGGCC
CTGGCCTTCCCCTGTACTGGGGCATATGAAGTTTGCTAGACCAAGGGGCCTCTCTTCCCA
ATGATGGCCAACTAGGCCATCTTTTGCTACATATGCAGCTAGAGACACGAGTTCTGGGGG
TACTGATTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCTTTGG
GTACTTTCTCTAGCTCCTACATTGGGGGCCCTGTGTTCCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000144138
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 126 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information