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Target CDS Information

Gene Symbol (Gene ID) Ranbp9 (ENSMUSG00000038546)
Cross Reference
CCDS CCDS49252.1
EMBL AC132121
GO GO:0005515, GO:0005515, GO:0005634, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Ranbp9-201
Reactome R-MMU-1266738, R-MMU-373760, R-MMU-422475
RefSeq_mRNA NM_019930.2
RefSeq_peptide NP_064314
UCSC uc011yyu.1
UniParc UPI000160249F
Uniprot/SPTREMBL E9Q5D6
Definition protein_id:ENSMUSP00000130636
translation:
MSGQPPPPPPQQQPPPPPPAAGAPGSGVALPAAAAASAGSSPAGSPGGGLGAAAAALLLH
PPPPPPPPPATAAPPPPASAAAPATAPPGLAVGPGPAAGVPVPGLAAGSSAAAPFPHGDS
ALNEQEKELQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKD
AASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDD
GHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGL
QTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSSYLV
HHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQLYPSLLERNP
NLLFTLKVRQFIEMVNGTDSEVRCLGGRSPKSQDSYPVSPRPFSSPSMSPSHGMSIHSLA
PGKSSTAHFSGFESCSNGVISNKAHQSYCHSKHQLSSLTVPELNSLNVSRSQQVNNFTSN
DVDMETDHYSNGVGETSSNGFLNGSSKHDHEMEDCDTEMEVDCSQLRRQLCGGSQAAIER
MIHFGRELQAMSEQLRRECGKNTANKKMLKDAFSLLAYSDPWNSPVGNQLDPIQREPVCS
ALNSAILETHNLPKQPPLALAMGQATQCLGLMARSGVGSCAFATVEDYLH

Chromosome 13
Length
Position(start - end)
77,368
43,403,559 - 43,480,928
Orient to Chromosome minus
Link Location : (13:43403559-43480928)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ranbp9 (ENSMUSG00000038546)
Transcript ID ENSMUST00000144326
Reports
substitution
cSNPs3
Insertion45
Deletion80
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 43419607 (p.Ala480Ala), 43419664 (p.Arg461Arg), 43480647 (p.Pro94Pro),
non-synonymous substitutions
B6 transcript
(ENSMUST00000144326)
MSGQPPPPPPQQQPPPPPPAAGAPGSGVALPAAAAASAGSSPAGSPGGGLGAAAAALLLH
PPPPPPPPPATAAPPPPASAAAPATAPPGLAVGPGPAAGVPVPGLAAGSSAAAPFPHGDS
ALNEQEKELQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKD
AASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDD
GHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGL
QTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSSYLV
HHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQLYPSLLERNP
NLLFTLKVRQFIEMVNGTDSEVRCLGGRSPKSQDSYPVSPRPFSSPSMSPSHGMSIHSLA
PGKSSTAHFSGFESCSNGVISNKAHQSYCHSKHQLSSLTVPELNSLNVSRSQQVNNFTSN
DVDMETDHYSNGVGETSSNGFLNGSSKHDHEMEDCDTEMEVDCSQLRRQLCGGSQAAIER
MIHFGRELQAMSEQLRRECGKNTANKKMLKDAFSLLAYSDPWNSPVGNQLDPIQREPVCS
ALNSAILETHNLPKQPPLALAMGQATQCLGLMARSGVGSCAFATVEDYLH*
MSMv4 transcript
MSGQPPPPPPQQQPPPPPPAAGAPGSGVALPAAAAASAGSSPAGSPGGGLGAAAAALLLH
PPPPPPPPPATAAPPPPASAAAPATAPPGLAVGPGPAAGVPVPGLAAGSSAAAPFPHGDS
ALNEQEKELQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKD
AASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDD
GHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGL
QTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSSYLV
HHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQLYPSLLERNP
NLLFTLKVRQFIEMVNGTDSEVRCLGGRSPKSQDSYPVSPRPFSSPSMSPSHGMSIHSLA
PGKSSTAHFSGFESCSNGVISNKAHQSYCHSKHQLSSLTVPELNSLNVSRSQQVNNFTSN
DVDMETDHYSNGVGETSSNGFLNGSSKHDHEMEDCDTEMEVDCSQLRRQLCGGSQAAIER
MIHFGRELQAMSEQLRRECGKNTANKKMLKDAFSLLAYSDPWNSPVGNQLDPIQREPVCS
ALNSAILETHNLPKQPPLALAMGQATQCLGLMARSGVGSCAFATVEDYLH*
homology100.00 (711 / 711)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ranbp9 (ENSMUSG00000038546)
Transcript ID ENSMUST00000144326
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGTAGGAAGTCTCCTTTTTTAAAATTCTGCTGACCTCAGTAAATATTTCC
ATGTTTAAAAAAAAATGGGCATAATTCTCTGCTACCTAACAAAGAGGCCTATGATGAGAA
TTAATGAGCTTATAAAATGTTTTGACGTCTGTCTCCAGAAGCCCTTCCTAAACGCTCACA
CAGTTCGCATTCCTGCCCTTTGACGATCTGCCCGTCTTGATTGGTATTCCTAACGTGGCT
GTTTCTCCCCCATTAAGTTCACTCGGACTCCTCATAAATTAATTAATTAACGAGAGGGTC
ACTCATGAAGCGGGAGACTTCGCCTTCAGAAATGGTTTCCAAGGGCCCTTTATTGACCCG
CTAGCTAGGCGGTAAGGCGTTAGAAACCCCGGGCTCAGCTCCCGGCGGCGCAGCAGGGCT
CGATTGCTCTCGCCTGGGCGCGCTGCGGCCTCCCGGCGGCTGAGGGGGACGGCCCGTCGA
GACGCGACGAGGCCGCCGGTCGGCGCAGCTAGGATCCCGCAGCCACCGGAGGCCCGCGTC
CGAACCCGCGCCCGCGTCCTCGCCCGCGCCGGCGAGCCCCAGGCCGCGGAGAAGGCCGTC
CGCGCGCGCACCAGGCCCGCCCCTCGCGCCGCGGCCCGCCTCCTCGCCTGGCGCCGCCCG
CGCGCAGCGTCTCGCGCCGCCCGCCCGCTCGCTCGCCCGCCGGGAAACAGCCGCGAGAGC
AGCGGCCGCCGCGGCCGCTCGCACCTCCTCGCAGTCTCTCTTCCCCGCTTCACCGCGTCG
CCCAGGGCCGCGCGCCCTTCCGCCCGCTCCCCTCGCTGTCCCACCGCATCGCTCCCGGTC
GCGTGCCCGCCAGCGCCTGGCCAACGCTCCCTCGCGCCCGCCCGCGGTCGGTCTCCTCAA
CCGCCGCGCTCCGCCGGGCCGCGCGGCCCGCCGCCTGCTTCCGGGGCGGGCGGACTCTGG
GCGCCTGGTGCCGGCGGCCGCAGCGACAGCGCCCCCGGGAAGCGCAGGAG
1 EXON 1 43,480,412 43,480,973 - 1 562
GAAGCAGGGACGAGTGGAGGTGCCGCAGGCTGAGTCGCGGCCGGGATGTCCGGGCAGCCG
CCGCCACCGCCGCCGCAACAGCAGCCGCCGCCGCCGCCGCCCGCCGCCGGGGCCCCGGGC
TCCGGAGTCGCCCTGCCCGCGGCCGCGGCCGCCAGCGCCGGCTCCTCCCCGGCCGGCTCG
CCCGGTGGAGGCTTGGGGGCCGCAGCGGCCGCCCTGCTGCTCCACCCGCCGCCGCCGCCG
CCGCCTCCCCCGGCCACCGCCGCGCCGCCGCCCCCCGCCTCGGCGGCCGCCCCCGCCACC
GCGCCGCCCGGCCTGGCGGTGGGCCCTGGCCCGGCCGCAGGCGTCCCGGTCCCGGGCCTG
GCGGCGGGCAGCAGCGCCGCTGCCCCTTTCCCGCACGGCGACTCGGCCCTCAACGAGCAG
GAGAAGGAGCTGCAGAGGCGGCTGAAGCGCCTCTACCCGGCTGTGGATGAGCAGGAGACG
CCGCTGCCCCGGTCCTGGAGCCCGAAGGACAAGTTCAGCTACATCGGCCTCTCGCAGAAC
AACCTGCGGGTGCACTACAAAG
INTRON 1 - 2 43,461,824 43,480,411 18,588
GTACAGGGCGCGGGGTCCGGCGGAG..........GTGGTTTGTTCTTTTTCACGGGCAG
2 EXON 2 43,461,712 43,461,823 1 2 112
GTCATGGTAAAACCCCCAAAGATGCAGCATCTGTTCGAGCCACGCATCCAATACCAGCGG
CCTGTGGGATTTATTATTTTGAAGTAAAAATTGTCAGTAAGGGAAGAGATGG
INTRON 2 - 3 43,436,143 43,461,711 25,569
GTAAGTGTAAATTTTGGTTGGCATA..........TTTCCTTTCCTTTGTTCTCCAACAG
3 EXON 3 43,436,090 43,436,142 2 1 53
CTACATGGGAATTGGTCTTTCTGCTCAAGGTGTGAACATGAATAGACTACCAG
INTRON 3 - 4 43,434,982 43,436,089 1,108
GTACACTTGAAAGTGAATTATAGTA..........AAATATACTGAACCTGTCTCTCCAG
4 EXON 4 43,434,814 43,434,981 1 1 168
GTTGGGATAAACATTCATATGGTTACCATGGGGATGATGGACATTCATTTTGTTCTTCTG
GAACTGGACAACCGTATGGACCAACTTTTACAACTGGTGATGTCATTGGCTGTTGTGTTA
ATCTTATCAACAATACCTGCTTTTACACGAAGAATGGACATAGTTTAG
INTRON 4 - 5 43,430,471 43,434,813 4,343
GTACTGAGATGTTGTTTTAAATACA..........TAATACCTTTCTTTTTTCTTTTTAG
5 EXON 5 43,430,448 43,430,470 1 0 23
GTATTGCTTTCACCGACTTACCG
INTRON 5 - 6 43,425,215 43,430,447 5,233
GTAAGACCTAATTTTTTGAAAGATC..........CTTAAGGAAATATGTTGTCTTACAG
6 EXON 6 43,425,030 43,425,214 0 2 185
CCAAATTTGTATCCTACTGTGGGGCTTCAGACACCAGGAGAAGTGGTTGATGCCAACTTT
GGGCAACATCCTTTTGTGTTTGATATAGAAGACTACATGCGAGAATGGAGAACCAAAATA
CAGGCCCAGATAGACCGCTTTCCTATCGGGGATCGAGAAGGAGAATGGCAGACCATGATC
CAAAA
INTRON 6 - 7 43,422,664 43,425,029 2,366
GTAAGAGCAAGGAATTTTAAATGTA..........ATGTGTTTCTTCTTTTTGTTTTAAG
7 EXON 7 43,422,551 43,422,663 2 1 113
AATGGTTTCATCTTATTTAGTCCACCATGGGTACTGTGCCACAGCAGAGGCCTTTGCCAG
ATCTACAGACCAGACTGTTCTAGAAGAATTAGCTTCCATTAAGAATAGACAAA
INTRON 7 - 8 43,421,320 43,422,550 1,231
GTAAGAATACTGTGGTACACAGCAA..........TATTTTTGCTTTTATTTCTGAATAG
8 EXON 8 43,421,211 43,421,319 1 2 109
GAATTCAGAAGTTGGTGTTAGCAGGACGAATGGGAGAAGCCATTGAAACAACACAACAGT
TATACCCAAGTTTACTTGAAAGAAATCCCAATCTCCTTTTCACATTAAA
INTRON 8 - 9 43,419,767 43,421,210 1,444
GTAAGTTTTAGTAAATGTTATTTTA..........AAGTAAACTTACTTTTTTCTTTCAG
9 EXON 9 43,419,576 43,419,766 2 1 191
AGTACGTCAGTTTATAGAAATGGTGAATGGTACAGACAGTGAAGTGCGGTGTTTGGGAGG
CCGAAGTCCAAAATCTCAAGACAGTTATCCCGTCAGTCCTCGGCCCTTTAGTAGTCCAAG
CATGAGCCCCAGTCATGGAATGAGTATCCACAGCTTAGCGCCAGGCAAAAGCAGCACTGC
ACATTTTTCTG
INTRON 9 - 10 43,416,470 43,419,575 3,106
GTGAGACGACGTCTTTTAAATTTTT..........TTTTTTTTTTCTGTTTTCTTCTCAG
10 EXON 10 43,416,325 43,416,469 1 2 145
GTTTTGAAAGTTGTAGCAATGGTGTAATATCAAATAAAGCACACCAATCATATTGCCATA
GTAAACACCAGCTATCCAGCTTGACTGTACCGGAGCTAAACAGTCTCAATGTATCAAGGT
CACAGCAAGTTAATAACTTTACCAG
INTRON 10 - 11 43,414,105 43,416,324 2,220
GTAATAGAGTGACTTCCCTAATTTC..........TTAGGTTTGTTTTCTTCATTTTCAG
11 EXON 11 43,413,983 43,414,104 2 1 122
TAATGATGTAGACATGGAAACAGATCACTACTCCAATGGAGTTGGAGAAACTTCATCCAA
TGGTTTCCTAAATGGTAGCTCTAAACATGACCACGAAATGGAAGATTGTGACACCGAAAT
GG
INTRON 11 - 12 43,412,563 43,413,982 1,420
GTCTGCAGTGATATTTCTTACATTT..........GAACTAGCTGTTGTTTTGCTTACAG
12 EXON 12 43,412,411 43,412,562 1 0 152
AAGTTGACTGCAGTCAGTTAAGACGCCAGCTGTGTGGAGGAAGTCAGGCTGCCATAGAGA
GGATGATTCACTTTGGCCGAGAGCTACAAGCCATGAGTGAGCAGCTGAGGAGAGAATGTG
GCAAGAACACAGCAAATAAGAAAATGCTGAAG
INTRON 12 - 13 43,406,724 43,412,410 5,687
GTAAGGGTGTCTGTCGCCTGCTTTC..........GAACACACTGACATTGTTTCAACAG
13 EXON 13 43,406,612 43,406,723 0 1 112
GACGCATTCAGCTTACTAGCATATTCGGATCCTTGGAATAGTCCAGTTGGAAATCAGCTT
GACCCAATTCAGAGAGAACCTGTGTGCTCAGCTCTTAACAGTGCAATATTAG
INTRON 13 - 14 43,403,690 43,406,611 2,922
GTAAGTAACTAAAGCAAGTCACCTA..........TCACTTTCTAATTCTTTTTCCTTAG
14 EXON 14 43,402,673 43,403,689 1 - 1,017
AAACCCACAATCTGCCAAAGCAACCTCCACTTGCCCTAGCCATGGGACAGGCCACACAGT
GTCTAGGCCTGATGGCTCGGTCAGGAGTTGGGTCCTGTGCATTTGCCACAGTGGAAGACT
ACCTACATTAGCTATGCACTTCAAGAGCTCACACTCACATTGTGGCAAACAGTCAACATG
GAAGTAGACCGGCTCTGCTGATTTGAAATTTAGATTTTTTTTTAATTATGTACTGGGGAC
AGGTTTTTGTCGCTTTACATTGCTTCCTAGTTTACAGCATGATGCAAATGATTTTCTAAC
TTAGTGTTAGGAGAAAATATTTTCCATCTTTTAACCTCTTAGTTGTCTAAGAGTTAAATA
TTACTGAATTTCAGACGTTCAAATTGATCATCAGAAATCCTTTAAAACAATTACCTAAAA
GAAACCAAAAATCCTGCCTTCTTTGTTGGGGGGAGAAGGGGGAAGGAAATGGAACAAGTT
GTGTTTGTGTTAGCATGTGGGTGATGTAAACTACAAATTGGGAGCTGTTCCGACCCCCGC
TCCTGTGTAAGCATTCAATCAGTGTAACTTGCAAAATGCATAAACATCCGACAGTTTGAA
TTAATAGTGTTGATGGAAGAAATCATTTTTAATGTGTACTGTAAAACTTGAAATACTCAG
GAGCTGAGTGAGTATGTTTGTTGCTACTTACAATCCCAACCTGTTAGTCCCAGTAGTTTT
GTTTTAACATGGTCTTTTTCAACTTTGTTTCCTGTTTAACTACAGATGACTTCTGTTGTA
GACTCACAAGTTTAACTGTTGTATTATAACAGTATTACATGTCAACAGTGTGGTTATGAC
CTTTATTTATATAAAAACCAAATATTTAGTCAATTTACTGTGTCTTAATTTAATCTTTGT
ACACCTTCCATTTTTAAGTGCTTAAATGAGTACTATATTGCAATAAAAAATGTAGCGATA
TTAAAAAAAATGTAGCGATATAATTAACCAGCCATTAAAAATTTACTTCTACAGATA
3' upstream sequence
TTAGTGTCAGTTGAATTTTATGTATTAGGTTCTCATACACTGCTTAGAGTCAGTTCAAGT
TCTACAGACTAAAACTACCTTTAGGTAACTGCATTAGTTAAAACCTTACACTGTGCAAGG
AAATAGAAAAATAGGAACTTAACAGGTAACTGTCAACCAAGCAAAACCTCCAAACTAGTT
AAAAATAAAATTTGAAAAGCTGTTCCAGAGCTGGCAAGATTGCTCAGCAGGTAAAGGTAC
TTAGTTACAACCTCTGGACACACATGGTAGGGAAGAATCTATATAAATTGTCTCCTGACA
CACCAGCTATGTGTGTGACACACACACCCCTACCTTTCTTTTTAAAGAACAAAAAACACT
TAATTCCGATGAATTTCGTCCGTGGTGAGGTAAAGGTACTAGCTGAGGTTAAAGTCTTCT
CCAACACATGTTTATTTACCTGTTCTGTGGATTTTTTGTTTGTTTTTTACACTGTGCTTT
TTAACAATGACTTCTTATTCCTTGACAACAGGAATCACATCAATAACACCAGAATAGCTT
TTCAGCTGTACTAAAAGACTTCATGAATGGTCTCTGTTCCCCTTCCTGGGGCCACTCAAA
AGATGAAGATTCCTCTTTAAGTGAGTGCTTCTCCCTCCAGGACACTCAATTGTGTTCTAG
AAAAGAAATGTGACCAGCTGTTTTCCCAAACAAAATATGTTTATGATTTTTATAATGATC
CGTTACAATGATTTATCAGTGACTAAATTTTGAGAAATGAACCCTCTCTGCACCCAGTAA
TCTTAAACTATGCATGCAAAATGCAGGTTTTTCATTTCACTTGACTTTGATTCACTTATA
AGTTTTCTTCTTCATCTTTTTGGCCATCCACCGTTTTTTAAACCTCTTGGCATTTTGTTG
TTTCTGAGCTCCTATAAGAGAACAGAAGCTCCAGGTGTAAAAACAGTCAACAGGTATTCA
AAACCCAAGAAACAAAGTCTGAGCGTCTAGTTTACATAAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Ranbp9 (ENSMUSG00000038546)
Transcript ID ENSMUST00000144326
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 711 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information