MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Stau2 (ENSMUSG00000025920)

Cross Reference

EMBL	AC115952, AC116695, AC162448, ...show all
GO	GO:0003725, GO:0016020, GO:0044822
goslim_goa	GO:0003674, GO:0003723, GO:0005575
MGI_trans_name	Stau2-011
OTTP	OTTMUSP00000044474
OTTT	OTTMUST00000082878
UniParc	UPI0001889EBE
Uniprot/SPTREMBL	D3YXB2
Vega_transcript	OTTMUST00000082878, Stau2-011
Vega_translation	178775, OTTMUSP00000044474

Definition

protein_id:ENSMUSP00000115041
translation:

MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPV
GKLKETVLSPAHEVMIVGITHYSADNFFLHWCL

Chromosome

Length
Position(start - end)

49,042
16,460,316 - 16,509,359

Orient to Chromosome

minus

Link

Location : (1:16460316-16509359)
/

Detail Map

name	Stau2 (ENSMUSG00000025920)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Stau2 note : staufen (RNA binding protein) homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1352508]

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162751

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000054668

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162627

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000027052

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162435

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000159558

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000128957

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000131257

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162007

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000127420

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000149320

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000151888

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000153966

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000115359

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000145092

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000144138

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14831.2 Uniprot/SWISSPROT:Q8CJ67 RefSeq_peptide:NP_079579 RefSeq_mRNA:NM_025303.3 Vega_transcript:OTTMUST00000082849 Vega_transcript:Stau2-001 UCSC:uc007ajn.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-001 PDB:1UHZ Vega_translation:178766 Vega_translation:OTTMUSP00000044454 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000044454 OTTT:OTTMUST00000082849 UniParc:UPI00000E8BA5
definition	note : transcript_id=ENSMUST00000162751 protein_id : ENSMUSP00000124505 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14831.2 Uniprot/SWISSPROT:Q8CJ67 RefSeq_mRNA_predicted:XM_006495528.2 RefSeq_mRNA_predicted:XM_011238387.1 RefSeq_peptide_predicted:XP_006495591.1 RefSeq_peptide_predicted:XP_011236689.1 Vega_transcript:OTTMUST00000086841 Vega_transcript:Stau2-013 UCSC:uc007ajn.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-013 PDB:1UHZ Vega_translation:178761 Vega_translation:OTTMUSP00000047064 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000047064 OTTT:OTTMUST00000086841 UniParc:UPI00000E8BA5
definition	note : transcript_id=ENSMUST00000054668 protein_id : ENSMUSP00000053190 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48223.1 Uniprot/SWISSPROT:Q8CJ67 RefSeq_mRNA_predicted:XM_011238389.1 RefSeq_peptide_predicted:XP_011236691.1 Vega_transcript:OTTMUST00000086840 Vega_transcript:Stau2-012 UCSC:uc007ajo.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-012 PDB:1UHZ Vega_translation:178760 Vega_translation:OTTMUSP00000047063 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000047063 OTTT:OTTMUST00000086840 UniParc:UPI00000E8BA6
definition	note : transcript_id=ENSMUST00000162627 protein_id : ENSMUSP00000123781 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48223.1 Uniprot/SWISSPROT:Q8CJ67 RefSeq_peptide:NP_001104742 RefSeq_mRNA:NM_001111272.1 Vega_transcript:OTTMUST00000082851 Vega_transcript:Stau2-003 UCSC:uc007ajo.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-003 PDB:1UHZ Vega_translation:178768 Vega_translation:OTTMUSP00000044456 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000044456 OTTT:OTTMUST00000082851 UniParc:UPI00000E8BA6
definition	note : transcript_id=ENSMUST00000027052 protein_id : ENSMUSP00000027052 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48223.1 Uniprot/SWISSPROT:Q8CJ67 RefSeq_mRNA_predicted:XM_006495532.2 RefSeq_peptide_predicted:XP_006495595.1 Vega_transcript:OTTMUST00000082860 Vega_transcript:Stau2-009 UCSC:uc007ajo.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-009 PDB:1UHZ Vega_translation:178773 Vega_translation:OTTMUSP00000044462 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000044462 OTTT:OTTMUST00000082860 UniParc:UPI00000E8BA6
definition	note : transcript_id=ENSMUST00000162435 protein_id : ENSMUSP00000123827 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q8CJ67 RefSeq_peptide_predicted:XP_011236693.1 Vega_transcript:OTTMUST00000086844 Vega_transcript:Stau2-016 UCSC:uc007ajq.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-016 PDB:1UHZ Vega_translation:178764 Vega_translation:OTTMUSP00000047067 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000047067 OTTT:OTTMUST00000086844 UniParc:UPI0000027D13
definition	note : transcript_id=ENSMUST00000159558 protein_id : ENSMUSP00000125726 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide_predicted:XP_011236690.1 Vega_transcript:OTTMUST00000082854 Vega_transcript:Stau2-006 Uniprot/SPTREMBL:D3Z6D2 UCSC:uc007ajn.2 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-006 Vega_translation:178771 Vega_translation:OTTMUSP00000044459 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000044459 OTTT:OTTMUST00000082854 UniParc:UPI00004761C8
definition	note : transcript_id=ENSMUST00000128957 protein_id : ENSMUSP00000122410 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000086843 Vega_transcript:Stau2-015 Uniprot/SPTREMBL:E2QRQ3 UCSC:uc007ajq.2 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-015 Vega_translation:178763 Vega_translation:OTTMUSP00000047066 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000047066 OTTT:OTTMUST00000086843 UniParc:UPI0001DD36E6
definition	note : transcript_id=ENSMUST00000131257 protein_id : ENSMUSP00000121410 translation : MFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q8CJ67 RefSeq_peptide_predicted:XP_011236693.1 Vega_transcript:OTTMUST00000082852 Vega_transcript:Stau2-004 UCSC:uc007ajq.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-004 PDB:1UHZ Vega_translation:178769 Vega_translation:OTTMUSP00000044457 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000044457 OTTT:OTTMUST00000082852 UniParc:UPI0000027D13
definition	note : transcript_id=ENSMUST00000162007 protein_id : ENSMUSP00000124303 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082853 Vega_transcript:Stau2-005 Uniprot/SPTREMBL:D6RGR9 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-005 Vega_translation:178770 Vega_translation:OTTMUSP00000044458 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000044458 OTTT:OTTMUST00000082853 UniParc:UPI0001889EBF
definition	note : transcript_id=ENSMUST00000127420 protein_id : ENSMUSP00000122116 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRGICKTTH

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide_predicted:XP_011236690.1 Vega_transcript:OTTMUST00000086842 Vega_transcript:Stau2-014 Uniprot/SPTREMBL:D3Z6D2 UCSC:uc007ajn.2 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-014 Vega_translation:178762 Vega_translation:OTTMUSP00000047065 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000047065 OTTT:OTTMUST00000086842 UniParc:UPI00004761C8
definition	note : transcript_id=ENSMUST00000149320 protein_id : ENSMUSP00000118489 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082859 Vega_transcript:Stau2-008 Uniprot/SPTREMBL:D3Z461 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-008 Vega_translation:178772 Vega_translation:OTTMUSP00000044461 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000044461 OTTT:OTTMUST00000082859 UniParc:UPI0001DD36E8
definition	note : transcript_id=ENSMUST00000153966 protein_id : ENSMUSP00000117537 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPT

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q8CJ67 Vega_transcript:OTTMUST00000082850 Vega_transcript:Stau2-002 UCSC:uc007ajr.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-002 PDB:1UHZ Vega_translation:178767 Vega_translation:OTTMUSP00000044455 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000044455 OTTT:OTTMUST00000082850 UniParc:UPI00000EAC2A
definition	note : transcript_id=ENSMUST00000115359 protein_id : ENSMUSP00000111016 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSPAHEVMIVGITHYSADNFFLHWCL

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082878 Vega_transcript:Stau2-011 Uniprot/SPTREMBL:D3YXB2 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-011 Vega_translation:178775 Vega_translation:OTTMUSP00000044474 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000044474 OTTT:OTTMUST00000082878 UniParc:UPI0001889EBE
definition	note : transcript_id=ENSMUST00000145092 protein_id : ENSMUSP00000115041 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSPAHEVMIVGITHYSADNFFLHWCL

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q8CJ67 Vega_transcript:OTTMUST00000086845 Vega_transcript:Stau2-017 UCSC:uc007ajr.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-017 PDB:1UHZ Vega_translation:178765 Vega_translation:OTTMUSP00000047068 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000047068 OTTT:OTTMUST00000086845 UniParc:UPI00000EAC2A
definition	note : transcript_id=ENSMUST00000144138 protein_id : ENSMUSP00000119130 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSPAHEVMIVGITHYSADNFFLHWCL

name
type	misc_feature
link
xref
definition	note : contig AC115952.11 1..83713(-1)

name
type	misc_feature
link
xref
definition	note : contig AC162448.10 1..125114(-1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Stau2 (ENSMUSG00000025920)
Transcript ID	ENSMUST00000145092

Reports
substitution
cSNPs	3
Insertion	43
Deletion	52
SNPs	+1kb 16520128(c.-10769T>C), 16520176(c.-10817G>A), 16520502(c.-11143G>T), 16520701(c.-11342G>C), 16520732(c.-11373T>A), 16520855(c.-11496C>T), 16521028(c.-11669T>C), 16521034(c.-11675A>G), 16521440(c.-12081T>C), 16521536(c.-12177A>G), 16522423(c.-13064A>G), 16522665(c.-13306A>G), 16522755(c.-13396T>C), 16522773(c.-13414C>T), 16522781(c.-13422T>A), 16522972(c.-13613T>C), 16523002(c.-13643C>T), 16523171(c.-13812A>G), 16523518(c.-14159T>C), 16523569(c.-14210T>C), 16523929(c.-14570A>T), 16524086(c.-14727A>T), 16524087(c.-14728C>T), 16524422(c.-15063T>C), 16524429(c.-15070G>T), 5'UTR CDS 16460375(c.223A>G), 16460389(c.209C>T), 16463087(c.126G>C), 3'UTR 16460170(c.146C>T), INTRON 16460497(c.179-78A>G), 16460625(c.179-206T>C), 16460767(c.179-348C>T), 16460806(c.179-387T>C), 16460932(c.179-513G>A), 16460951(c.179-532T>C), 16461008(c.179-589T>A), 16461092(c.179-673G>A), 16461219(c.179-800G>A), 16461265(c.179-846T>C), 16461319(c.179-900G>A), 16461360(c.179-941C>T), 16461367(c.179-948T>C), 16461510(c.179-1091T>G), 16461553(c.179-1134T>C), 16461641(c.179-1222T>C), 16461710(c.179-1291A>G), 16461832(c.178+1203G>T), 16461924(c.178+1111A>C), 16462187(c.178+848C>T), 16462192(c.178+843T>A), 16462334(c.178+701C>T), 16462374(c.178+661T>G), 16462377(c.178+658T>C), 16462542(c.178+493A>G), 16462556(c.178+479T>A), 16463443(c.19-249A>G), 16463518(c.19-324A>G), 16463759(c.19-565G>T), 16463811(c.19-617G>C), 16463912(c.19-718C>T), 16463945(c.19-751G>A), 16464322(c.19-1128A>C), 16464350(c.19-1156A>G), 16464361(c.19-1167T>G), 16464619(c.19-1425C>T), 16464650(c.19-1456A>G), 16464747(c.19-1553T>C), 16465071(c.19-1877T>C), 16465097(c.19-1903C>T), 16465200(c.19-2006C>T), 16465306(c.19-2112A>C), 16465368(c.19-2174C>G), 16465741(c.19-2547G>A), 16465952(c.19-2758A>T), 16466451(c.19-3257G>C), 16466486(c.19-3292C>T), 16466493(c.19-3299G>A), 16466497(c.19-3303T>A), 16466623(c.19-3429T>C), 16466793(c.19-3599G>C), 16466849(c.19-3655G>A), 16467124(c.19-3930C>A), 16467219(c.19-4025G>A), 16468651(c.19-5457T>A), 16468735(c.19-5541C>T), 16468830(c.19-5636A>C), 16468908(c.19-5714C>G), 16469073(c.19-5879A>G), 16469148(c.19-5954T>C), 16469197(c.19-6003A>C), 16469217(c.19-6023T>C), 16469235(c.19-6041T>A), 16469236(c.19-6042T>C), 16469335(c.19-6141T>C), 16469365(c.19-6171G>A), 16469397(c.19-6203T>G), 16469444(c.19-6250G>A), 16469466(c.19-6272A>C), 16469486(c.19-6292G>A), 16469562(c.19-6368A>C), 16469595(c.19-6401C>T), 16469676(c.19-6482A>T), 16469690(c.19-6496C>G), 16469711(c.19-6517G>T), 16469733(c.19-6539C>T), 16469983(c.19-6789C>G), 16470043(c.19-6849T>C), 16470084(c.19-6890G>T), 16470271(c.19-7077C>T), 16470306(c.19-7112C>T), 16470311(c.19-7117A>G), 16470324(c.19-7130T>C), 16470384(c.19-7190A>T), 16470389(c.19-7195C>A), 16470401(c.19-7207A>G), 16470478(c.19-7284T>A), 16470530(c.19-7336A>G), 16470573(c.19-7379G>A), 16470596(c.19-7402A>C), 16470597(c.19-7403G>T), 16470708(c.19-7514G>A), 16470860(c.19-7666A>G), 16470862(c.19-7668C>T), 16470888(c.19-7694A>G), 16470905(c.19-7711T>C), 16470952(c.19-7758C>T), 16470979(c.19-7785A>T), 16471043(c.19-7849A>G), 16471183(c.19-7989C>T), 16471194(c.19-8000G>A), 16471331(c.19-8137T>C), 16471435(c.19-8241C>T), 16471510(c.19-8316G>T), 16471514(c.19-8320T>A), 16471568(c.19-8374G>A), 16471617(c.19-8423G>A), 16471620(c.19-8426G>A), 16471630(c.19-8436T>C), 16471807(c.19-8613C>T), 16471809(c.19-8615T>C), 16471862(c.19-8668C>G), 16471908(c.19-8714T>A), 16471934(c.19-8740A>G), 16472079(c.19-8885A>C), 16472081(c.19-8887C>T), 16472089(c.19-8895A>G), 16472204(c.19-9010T>C), 16472220(c.19-9026G>A), 16472248(c.19-9054G>A), 16472288(c.19-9094G>A), 16472389(c.19-9195C>T), 16472409(c.19-9215A>T), 16472438(c.19-9244G>A), 16472578(c.19-9384G>A), 16472785(c.19-9591G>T), 16472792(c.19-9598T>G), 16472800(c.19-9606T>C), 16473209(c.19-10015C>T), 16473273(c.19-10079A>G), 16473582(c.19-10388G>T), 16473608(c.19-10414T>C), 16473610(c.19-10416C>T), 16473940(c.19-10746C>T), 16474012(c.19-10818T>C), 16474049(c.19-10855C>T), 16474094(c.19-10900T>C), 16474126(c.19-10932C>T), 16474257(c.19-11063G>A), 16474258(c.19-11064T>C), 16474320(c.19-11126C>T), 16474397(c.19-11203A>G), 16474442(c.19-11248G>A), 16474458(c.19-11264A>G), 16474583(c.19-11389T>G), 16474613(c.19-11419A>T), 16474679(c.19-11485G>T), 16474755(c.19-11561T>A), 16474777(c.19-11583G>T), 16474920(c.19-11726T>G), 16474949(c.19-11755G>A), 16474954(c.19-11760G>A), 16474987(c.19-11793A>C), 16475066(c.19-11872C>A), 16475074(c.19-11880T>C), 16475088(c.19-11894G>C), 16475095(c.19-11901C>T), 16475115(c.19-11921C>A), 16480645(c.19-17451G>A), 16480798(c.19-17604G>C), 16480873(c.19-17679C>T), 16480937(c.19-17743C>T), 16480957(c.19-17763G>T), 16480985(c.19-17791C>T), 16481059(c.19-17865A>G), 16481093(c.19-17899C>T), 16481246(c.19-18052A>C), 16481313(c.19-18119T>C), 16481330(c.19-18136C>T), 16481494(c.19-18300C>T), 16481764(c.19-18570A>G), 16482497(c.19-19303A>T), 16482513(c.19-19319A>C), 16482734(c.19-19540T>G), 16482877(c.19-19683A>C), 16482906(c.19-19712C>T), 16483083(c.19-19889C>T), 16483084(c.19-19890T>C), 16483099(c.19-19905T>C), 16483220(c.19-20026G>A), 16483401(c.19-20207C>T), 16483424(c.19-20230G>T), 16483446(c.19-20252C>T), 16483448(c.19-20254G>A), 16483456(c.19-20262A>G), 16483457(c.19-20263C>A), 16483563(c.19-20369C>G), 16483637(c.19-20443A>G), 16483678(c.19-20484C>A), 16483686(c.19-20492A>C), 16483745(c.19-20551C>T), 16483822(c.19-20628T>C), 16483836(c.19-20642G>T), 16483840(c.19-20646C>A), 16484737(c.19-21543C>A), 16484763(c.19-21569A>G), 16484924(c.19-21730C>T), 16484958(c.19-21764A>C), 16485029(c.19-21835T>C), 16485039(c.19-21845A>G), 16485142(c.19-21948A>G), 16485796(c.19-22602A>G), 16485982(c.19-22788C>G), 16486532(c.18+22810A>G), 16486601(c.18+22741C>T), 16486636(c.18+22706C>T), 16486710(c.18+22632G>A), 16486749(c.18+22593C>T), 16486966(c.18+22376A>T), 16487079(c.18+22263T>A), 16487127(c.18+22215C>T), 16487166(c.18+22176T>C), 16487169(c.18+22173T>C), 16487291(c.18+22051T>A), 16487347(c.18+21995G>A), 16487358(c.18+21984G>A), 16487425(c.18+21917T>C), 16487447(c.18+21895A>G), 16487558(c.18+21784A>G), 16487626(c.18+21716G>C), 16487822(c.18+21520G>A), 16487842(c.18+21500C>T), 16487895(c.18+21447A>G), 16488122(c.18+21220A>G), 16488256(c.18+21086A>G), 16488291(c.18+21051C>T), 16488311(c.18+21031A>G), 16488358(c.18+20984G>A), 16488815(c.18+20527G>A), 16489281(c.18+20061T>G), 16489310(c.18+20032C>G), 16489386(c.18+19956G>T), 16489609(c.18+19733C>T), 16489612(c.18+19730A>G), 16489982(c.18+19360G>A), 16490002(c.18+19340C>T), 16490181(c.18+19161A>G), 16490199(c.18+19143G>A), 16490415(c.18+18927G>T), 16490426(c.18+18916T>C), 16490481(c.18+18861T>C), 16490529(c.18+18813A>T), 16490621(c.18+18721A>G), 16490663(c.18+18679T>G), 16490811(c.18+18531T>C), 16490918(c.18+18424G>A), 16491176(c.18+18166A>G), 16491438(c.18+17904T>A), 16491500(c.18+17842C>G), 16491681(c.18+17661G>A), 16491734(c.18+17608C>T), 16491771(c.18+17571T>A), 16492023(c.18+17319C>A), 16492234(c.18+17108T>C), 16492284(c.18+17058A>G), 16492503(c.18+16839A>T), 16492517(c.18+16825T>C), 16492691(c.18+16651A>G), 16492912(c.18+16430A>C), 16492994(c.18+16348C>G), 16493040(c.18+16302C>A), 16493050(c.18+16292G>T), 16493090(c.18+16252T>C), 16493100(c.18+16242G>A), 16493974(c.18+15368C>A), 16494171(c.18+15171G>A), 16494200(c.18+15142A>G), 16494235(c.18+15107A>G), 16494327(c.18+15015G>A), 16494662(c.18+14680T>A), 16494903(c.18+14439T>C), 16494981(c.18+14361G>A), 16495241(c.18+14101A>G), 16495269(c.18+14073C>T), 16495396(c.18+13946T>A), 16495497(c.18+13845G>T), 16495561(c.18+13781G>A), 16495594(c.18+13748A>C), 16495935(c.18+13407C>T), 16496065(c.18+13277C>T), 16496120(c.18+13222C>T), 16496368(c.18+12974C>T), 16496374(c.18+12968T>C), 16496435(c.18+12907C>T), 16496472(c.18+12870G>A), 16496524(c.18+12818A>G), 16497391(c.18+11951G>T), 16497845(c.18+11497C>T), 16497854(c.18+11488C>T), 16498261(c.18+11081T>G), 16498262(c.18+11080A>G), 16498891(c.18+10451G>A), 16499380(c.18+9962A>G), 16499498(c.18+9844C>T), 16499809(c.18+9533T>G), 16500099(c.18+9243C>T), 16500131(c.18+9211A>G), 16500178(c.18+9164G>A), 16500409(c.18+8933G>A), 16500450(c.18+8892C>T), 16500659(c.18+8683C>T), 16500665(c.18+8677A>G), 16500772(c.18+8570G>C), 16500892(c.18+8450C>T), 16501136(c.18+8206A>G), 16501272(c.18+8070A>G), 16501357(c.18+7985T>C), 16501703(c.18+7639G>A), 16501742(c.18+7600A>T), 16502446(c.18+6896T>C), 16502545(c.18+6797C>T), 16502817(c.18+6525T>G), 16503123(c.18+6219C>T), 16503145(c.18+6197T>C), 16504392(c.18+4950T>C), 16504538(c.18+4804C>T), 16504666(c.18+4676T>G), 16504976(c.18+4366T>C), 16505004(c.18+4338A>C), 16505140(c.18+4202A>G), 16505141(c.18+4201A>G), 16505192(c.18+4150A>G), 16505322(c.18+4020G>A), 16505342(c.18+4000G>A), 16505483(c.18+3859A>T), 16505612(c.18+3730G>A), 16505719(c.18+3623A>G), 16505727(c.18+3615T>G), 16505789(c.18+3553C>T), 16506039(c.18+3303A>G), 16506835(c.18+2507T>C), 16507429(c.18+1913T>C), 16507558(c.18+1784A>T), 16507749(c.18+1593A>G), 16507881(c.18+1461G>A), 16507885(c.18+1457A>G), 16507921(c.18+1421T>G), 16507954(c.18+1388T>C), 16507970(c.18+1372T>C), 16507971(c.18+1371A>G), 16507994(c.18+1348A>G), 16508132(c.18+1210T>G), 16508300(c.18+1042T>C), 16508317(c.18+1025T>C), 16508323(c.18+1019T>C), 16508329(c.18+1013G>A), 16508760(c.18+582T>G), 16508989(c.18+353A>T), 16509141(c.18+201G>A), 16509559(c.-49-151C>A), 16509697(c.-49-289A>G), 16509710(c.-49-302A>T), 16510029(c.-49-621A>G), 16510069(c.-49-661G>A), 16510186(c.-49-778G>A), 16510675(c.-49-1267G>A), 16510792(c.-49-1384C>T), 16510985(c.-49-1577T>C), 16511022(c.-49-1614C>G), 16511272(c.-49-1864G>A), 16511307(c.-49-1899T>C), 16511587(c.-49-2179A>T), 16511603(c.-49-2195G>A), 16511629(c.-49-2221G>T), 16511687(c.-49-2279T>A), 16511791(c.-49-2383C>A), 16511832(c.-49-2424C>T), 16511856(c.-49-2448A>G), 16512011(c.-49-2603G>A), 16513161(c.-49-3753T>C), 16513509(c.-49-4101G>A), 16513782(c.-49-4374T>G), 16513784(c.-49-4376A>G), 16513851(c.-49-4443G>A), 16513953(c.-49-4545T>C), 16514029(c.-49-4621G>T), 16514207(c.-49-4799T>C), 16514220(c.-49-4812A>T), 16514244(c.-49-4836T>C), 16514267(c.-49-4859A>G), 16514304(c.-49-4896C>T), 16514345(c.-49-4937C>A), 16514369(c.-49-4961G>A), 16515463(c.-50+4538T>C), 16517350(c.-50+2651C>T), 16517575(c.-50+2426A>G), 16517903(c.-50+2098G>C), 16518221(c.-50+1780C>G), 16518241(c.-50+1760A>T), 16518266(c.-50+1735A>C), 16518312(c.-50+1689A>C), 16518329(c.-50+1672T>C), 16518353(c.-50+1648C>T), 16518411(c.-50+1590C>G), 16518653(c.-50+1348A>G), 16518709(c.-50+1292G>C), -1kb 16459337(c.979T>C), 16459461(c.855T>C), 16459587(c.729G>T), 16459627(c.689G>C), 16459807(c.509G>A), 16459820(c.496C>A), 16459874(c.442G>A), 16459915(c.401C>A), 16460017(c.299T>C), 16460057(c.*259C>T),
Insertions	+1kb 16521423 (c.-12065_-12064insT), 16523146 (c.-13788_-13787insG), 5'UTR CDS 3'UTR INTRON 16460919 (c.179-501_179-500insTT), 16461882 (c.178+1152_178+1153insG), 16462900 (c.178+133_178+134dupCA), 16468554 (c.19-5361_19-5360insTT), 16468631 (c.19-5438_19-5437insGA), 16468634 (c.19-5441_19-5440insAG), 16480666 (c.19-17473_19-17472insCTCA), 16482541 (c.19-19348dupT), 16482547 (c.19-19354dupT), 16483401 (c.19-20212_19-20208dupTTCTT), 16484446 (c.19-21253_19-21252insC), 16484460 (c.19-21267dupT), 16484463 (c.19-21270_19-21269insTT), 16484554 (c.19-21361_19-21360insAAAA), 16487723 (c.18+21618dupA), 16488373 (c.18+20968dupT), 16489414 (c.18+19927dupT), 16489772 (c.18+19564_18+19569dupTACACA), 16489816 (c.18+19525_18+19526insAT), 16489843 (c.18+19498_18+19499insATAT), 16491179 (c.18+18162_18+18163insAC), 16491964 (c.18+17377dupT), 16493811 (c.18+15530dupA), 16494675 (c.18+14666dupT), 16502636 (c.18+6705_18+6706insATTT), 16504067 (c.18+5274_18+5275insTTTAA), 16505675 (c.18+3666_18+3667insTCTATCTC), 16505962 (c.18+3379dupT), 16508329 (c.18+1012_18+1013insTG), 16513355 (c.-49-3948_-49-3947insC), 16513851 (c.-49-4444dupA), 16514220 (c.-49-4814_-49-4813dupTT), 16517142 (c.-50+2857_-50+2858dupAC), 16517608 (c.-50+2392_-50+2393insCAA), 16517638 (c.-50+2362dupA), 16517641 (c.-50+2359_-50+2360insA), 16518321 (c.-50+1679dupT), 16518428 (c.-50+1572_-50+1573insAA), 16518525 (c.-50+1475_-50+1476insGGT), 16518640 (c.-50+1360_-50+1361insG), -1kb 16459808 (c.507_508insTT),
Deletions	+1kb 16520238 (c.-10882_-10880delTGG), 16520494 (c.-11136delC), 16521585 (c.-12227delG), 16522284 (c.-12928_-12926delTTT), 16522406 (c.-13052_-13048delAAAAA), 5'UTR CDS 3'UTR INTRON 16460900 (c.179-482delA), 16463428 (c.19-241_19-235delCAGACAG), 16466935 (c.19-3745_19-3742delTTCT), 16469277 (c.19-6084delT), 16469612 (c.19-6419delT), 16470647 (c.19-7454delG), 16470784 (c.19-7594_19-7591delTTGT), 16471872 (c.19-8679delT), 16472002 (c.19-8812_19-8809delTATA), 16472645 (c.19-9454_19-9452delTTT), 16480450 (c.19-17259_19-17257delTTC), 16480692 (c.19-17500_19-17499delTT), 16480700 (c.19-17508_19-17507delTT), 16480910 (c.19-17717delG), 16482342 (c.19-19149delT), 16482434 (c.19-19241delT), 16482658 (c.19-19465delA), 16484138 (c.19-20947_19-20945delCCT), 16484445 (c.19-21254_19-21252delTTC), 16484653 (c.19-21460delC), 16487314 (c.18+22024_18+22027delTTAA), 16489876 (c.18+19464_18+19465delTA), 16490427 (c.18+18914delT), 16491179 (c.18+18155_18+18162delTAACGTTA), 16492320 (c.18+17014_18+17021delTTTTGTTT), 16495575 (c.18+13766delA), 16496277 (c.18+13061_18+13064delGGAG), 16497606 (c.18+11734_18+11735delTT), 16498376 (c.18+10964_18+10965delAA), 16499457 (c.18+9879_18+9884delAGGAGG), 16500227 (c.18+9113_18+9114delCC), 16500642 (c.18+8699delT), 16502031 (c.18+7309_18+7310delAG), 16503442 (c.18+5892_18+5899delCGTGTGTG), 16504944 (c.18+4395_18+4397delCCA), 16505517 (c.18+3821_18+3824delGTAA), 16506081 (c.18+3258_18+3260delAAG), 16511237 (c.-49-1830delC), 16511533 (c.-49-2126delC), 16511967 (c.-49-2560delA), 16514015 (c.-49-4608delT), 16514404 (c.-49-4999_-49-4997delTTT), 16515429 (c.-50+4571delA), 16515784 (c.-50+4216delG), 16516696 (c.-50+3303_-50+3304delAT), -1kb 16459828 (c.487delA), 16459834 (c.481delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	2
synonymous substitutions	16463087 (p.Thr42Thr),
non-synonymous substitutions	16460375 (p.Met75Val), 16460389 (p.Pro70Leu),
B6 transcript (ENSMUST00000145092)	MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPV GKLKETVLSPAHEVMIVGITHYSADNFFLHWCL*
MSMv4 transcript	MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPV GKLKETVLSLAHEVVIVGITHYSADNFFLHWCL*
homology	97.87 (94 / 94)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Stau2 (ENSMUSG00000025920)
Transcript ID	ENSMUST00000145092

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGACAGCTTTTTTTTTTACATTTTTTCATAATCTGTTCATTGAGTGAAGA GAGAATAGATTGAAGGCAGAGCGAACGAACTTGTGGAAAGAACAGCCATGGAAGGCTTGT TTCCCTGATGTGAAGGGCCTGTAGTCGTTTGTATCACTGAACACCTGAATGAGGCCTAAG TAGCTAGAAACCATTAATTAAGGGGTGGTCCCCATTTAAGAAGGAATCCACATATTTGAG AAAACTAGTGGAAGTGAAAAGTGAGAAAGGCACACGGGAAACATGAGAGACAAACGAAGA GCTTGCCTACACTGTATCACCGGAAACTACCATGTCAGGCTCTAGCTAGAGAGCTTTACA GGTATCTCGCCTATACATACAGTATCACGTTTTTGTCTCTTTAAAAATTGTAAATCAGTG TATAAGGTAATAGATCCACAAATACTGCCTCATTTGTAGAGTTGGTTTTAAAATATGACT GAAATCACAGGGCTCACAGACATATCCCAGGCAGACAAGCCATACCAAGGAAACCCCAGG AAGAATAATGCCAGTCAGAATACACTAATAGTTCTATTTCTAGACTTCTTTTTCATATGA TTTTTGGTGCCACTTATTTAAAATCCATTGGTCTTAACTAGGCTGACGTTATCTGGCCAT ACCTAACCCATATCTAAACCAGGACAAAAGAACAAGTAATTTGAGTTTTTTAGCACTCTT CAAAAACCAAGGATCTAGGACAGTGTTTTAAGACGATCCTCATTTTTGGCTCTAAAGATT TTTTTTTTTTTGGTACGGGCACACAACTTTAATATATTTATTATTCATTTTTTCCTGATG AATGATGTGGGCCGTAGAGCAGGTGATGGGGGCTCGCTTGCGCTGCTTGCTACCCTCCTC CCCCTTCTTCCTCCTCCAGTCTAGAAAGGTGCAGGATCCGCCGAATCCTACGTCGCACCG CAGTGGAACGGACGCGGGATGGTCGCGCGTCCCCAGCTAGGCAGAGGCGG
1	EXON 1	16,520,001	16,520,021	-	-	21	GCAGTCAGCGAGCCGGGAAAG
	INTRON 1 - 2	16,509,409	16,520,000			10,592	GTAGGAGCAGAGCGTCGGGGACAGG..........TTATTTCTTTGTTTTCATTTTCCAG
2	EXON 2	16,509,342	16,509,408	-	0	67	TTTTGTGGAGCTGTGAGGGATACGGAAGTTTGATCAATATTGTCTTAACATGCTTCAGAT AAATCAG
	INTRON 2 - 3	16,463,195	16,509,341			46,147	GTGAGTATGATTAAGGCGTGTCTTA..........GTTTTCTCTATCTGGTCTTTCCAAG
3	EXON 3	16,463,035	16,463,194	0	1	160	ATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGAGCAGTATA AAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACCCTTCCCAAACCA GTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAG
	INTRON 3 - 4	16,460,420	16,463,034			2,615	GTATGGCATTGGTTTGTTTCCTTCC..........GGAGTTTTCCTTCTTTCTCTTCCAG
4	EXON 4	16,460,104	16,460,419	1	-	316	TGGGTAAGCTGAAGGAAACAGTTCTGAGTCTGGCTCATGAAGTTGTGATTGTTGGAATCA CACATTACTCTGCTGATAACTTCTTTTTACATTGGTGTTTGTGAGATTCATCTGCATTGT TTTTAAAGTGATACTGCATTGTGTTTACAATGATAATGGCTGTATAGCATTCCATTGCAT GAATAGACAGTAATTTGGTAGTATTGAATTGTTTGCAGATTGGACACTTGGAAATAATAC TGCTGTAAATATTCTTGTATATACACCTTTCTGTTGGGAGTGAACCTAGGATCATCAGTA CTGCTGGGTAATAGGT
	3' upstream sequence						TTCCATGTACTAAGAATTAACACACACGGCCAAGCTGCCACTGGTGTACCCTAGTAGCAG TTAGGAGGGCTCTCTGTGGTCTTGTTCATCATTTGACTTTTTTAGCTTTTCATGACAGCG GTGTTAATACTTCATTGTGGTTTTCATTTGCATTTCCCTATGGATGATGAAGCTGCTGGT GAAGTGTGATCGCTCGTCCATGGTGTCATTTGTCCACTGGTGTTAGAATAGTCTCTTTAA AAAGGGATGGTTGGGAGTTACATTGTTTAAAAAAATATGTTTTCTTTTTAATGACGGGGA TTTTGTACATATTCTAGATTCACATAGTTTGTGAGATATGTATATTCCAGGATATTTTTC TGAAATATTACAGAATATCTTTCAAAAATTTTTTGTTTGTTGTTTATTGAGACTAAGACT GTGTATTTCTAGCTGTCTTGTAATTTGCCAAGTGCTACAGGCTGGCTTCAAACTCACAGA GATCTGCCTGCCTCTACCTTTAATGCTGGTACTAAATGTGTGTGCTACCATCCCTGACTT CTTTTGAAAAAAAAAATTATTTCTTTTTTTTATTAGATATTTTCTTCATTTACATTTCAA ATGCTATCCCAAAAGTCCCCTATACCCTCCCCCGCCCTGCTCCCCAACCCACTCACTCCC ACTTCTTGGCCCTGGCCTTCCCCTGTACTGGGGCATATGAAGTTTGCTAGACCAAGGGGC CTCTCTTCCCAATGATGGCCAACTAGGCCATCTTTTGCTACATATGCAGCTAGAGACACG AGTTCTGGGGGTACTGATTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTT CAGCTCTTTGGGTACTTTCTCTAGCTCCTACATTGGGGGCCCTGTGTTCCATCCTATAGA TGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCAAAGCCTCACAGGAGACAGC TATATCAGGGTCCTTTCAGCAAAATCTTGCTGGCGTATGC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Stau2 (ENSMUSG00000025920)
Transcript ID	ENSMUST00000145092

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 94 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information