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Target CDS Information

Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Cross Reference
EMBL AC102311, AC117576, CH466536
GO GO:0000002, GO:0003735, GO:0005739, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0003735, ...show all
MGI_trans_name Mrpl15-004
OTTP OTTMUSP00000068725
OTTT OTTMUST00000072662
protein_id EDL14244.1
RefSeq_peptide_predicted XP_006495587.2
UniParc UPI000002616F
Uniprot/SPTREMBL A0A0A6YVP4
Vega_transcript Mrpl15-004, OTTMUST00000072662
Vega_translation 178608, OTTMUSP00000068725
Definition protein_id:ENSMUSP00000141204
translation:
MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRERRPRDRRRGRKCGRGHKGERQRGT
RPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQL
VNGRGVTIQPLKRDYGVQLVEEVHTLWLLFAMSELSALLLSYTGAFIE

Chromosome 1
Length
Position(start - end)
3,455
4,782,221 - 4,785,677
Orient to Chromosome minus
Link Location : (1:4782221-4785677)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Transcript ID ENSMUST00000146665
Reports
substitution
cSNPs0
Insertion8
Deletion11
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000146665)
MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRERRPRDRRRGRKCGRGHKGERQRGT
RPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQL
VNGRGVTIQPLKRDYGVQLVEEVHTLWLLFAMSELSALLLSYTGAFIE*
MSMv4 transcript
MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRERRPRDRRRGRKCGRGHKGERQRGT
RPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQL
VNGRGVTIQPLKRDYGVQLVEEVHTLWLLFAMSELSALLLSYTGAFIE*
homology100.00 (169 / 169)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Transcript ID ENSMUST00000146665
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCCAGAGACGTAGAACCAGACCAATGACTCACTGCACTGTACATTTGCAA
GTAAGAATGTATGGACAAAAGGGTATACTGTAGGACACACTGTGACACACGACAGCTTCA
CGATGAGGTTTCCTAAACTTTATTTTTATTTTTTGGGGCGGGGGGTTTGCAAGGGCAAAA
AGGACGGAGGGATTGTGGATCTGGAGTGTATGATGTGGAATTCACAACGAATCAATAAAA
TAAAAATAAAGGTTTATTTGAGTTAGAAAAAGCTGCTTATTAAATTGTCTCACCTTCACT
ATATAACTGATAGAGCTTGGTAGGAGCAATTCTCCAGCAAGACAGTGGAGCAGAAAAAGA
ATATAAAAATGAACACATTGTTTTCTATATTGCTTGTATTAAGACAAGTTTTAAAAATCA
TTTAATTTGGAGAGTTAAATATATGTTTGGCAGTTTAAGTTCATTAGCTTTGAATCCTAT
CTATACCATCTGCTGTGACAGCTGGGTCGATCTGATAGGCATAAAACCACACCTCGCTTC
TAGCATGGTTGTTTATATGAATCTAGTAAGGCTAACTTTAACTCAGTGTCTGGCATACCC
CAGGAGCTAAGTATGCCCCACCCCCCATCGTTAACTGCAAGGCACGCTATTAGGTTGAAC
CTAATTAGACAATTAATTCTAGAGCCAGGCACTGTAACAGTTGAATTATCAGAGTCTCAA
AGCTTGAACCTGTTCACATCATTTTGGATTACTCTTCGCTTCATGAGGCCCCACTTTTAC
CGCACAACGTGTTCAGTCATTACAGGGCAGAAGAGAACAGTTTTCGTTCACAAGATGGTA
CCCAAGCCAGAGGATAAAGCATGATCTCACAAAAGTTGATGCAGTTCCCCGAAGTAAAAA
GCCATCAAGCCTGGAAGCTGGAAGACACAGCCTACCGACCCTGATGCGGTCGCTCTGCAG
CACGACAGGGGCGGGGCAGTACGGCCGCTGCAGCGCGACAGGGGCCGGGC
1 EXON 1 4,785,573 4,785,739 - 0 167
GGAGCCGTAAAGCAACGCGGAGTCTACGCCGCTTCCAGGGCGCCCTTGAAGCACCGCGGG
TCATGGCTGGCACGGCGCGCGGCTGCGGGACCAGCCTGGACCTGCTGCGGTCCTTGCCGA
GAGTGAGCCTGGCCAACCTGAAGCCCAGTCCTAACTCCAGAAAACGG
INTRON 1 - 2 4,784,106 4,785,572 1,467
GTAAACGCTTGGCGGCGGTGCGGGG..........TCTTAAAACTCACTTTTTCTTGTAG
2 EXON 2 4,783,951 4,784,105 0 2 155
GAAAGACGTCCAAGAGATCGGAGAAGAGGTAGGAAGTGTGGCAGAGGCCATAAAGGAGAA
AGGCAGAGAGGAACCCGGCCAAGGCTGGGCTTTGAGGGAGGGCAGACTCCATTTTACATA
CGAATCCCAAAATATGGATTTAATGAAGGACATAG
INTRON 2 - 3 4,782,734 4,783,950 1,217
GTAAGGTTGTTTTTTTTTTTTTGTT..........TAATTATTACATTCCTGCTTTGCAG
3 EXON 3 4,782,568 4,782,733 2 0 166
TTTCAGGCACCAGTATCAGCCTTTGAGTCTCAGGAGACTACAGTATCTCATTGATTTAGG
TCGAGTTGATCCAACTCAACCTATTGACCTAACCCAGCTTGTGAATGGGAGAGGTGTGAC
CATCCAGCCGCTTAAGAGGGATTATGGAGTCCAGCTGGTTGAAGAG
INTRON 3 - 4 4,782,302 4,782,567 266
GTAACTCTAGATTGGATTTTGTATG..........GAGACCTTGCACCTCTTCACTTCAG
4 EXON 4 4,781,221 4,782,301 0 - 1,081
GTGCACACTTTATGGCTCCTCTTTGCCATGTCGGAGCTGTCCGCATTGCTGCTGTCCTAC
ACTGGGGCCTTCATTGAGTAAGATAAGGAGTACCTGCATAAAGTCTGAAAATGACATAAT
AAAGTCAGACTCGTGTCTGGGAAGGATGGGGTGGAGCAACACGAGGCCTCCACACAGTGT
AAAACCTAAACAGTGCTGGAGTTGCACTTCAGCCTGTACAGGCTCTCGGTTTCCTTCCTA
GCTCATAAAGACTTAGGAGTTGTGGATGGCCACCAACCAGTAAGTAAAAACTGTGGAAGG
TGAATCCGAGGGACTGCTTACTCAACACCTCATCTTGGGGCCTGGAGAGATGATGAGTGC
TTAAGGACACTGGCTGTTCATCTAGAGAATCTGGGTTCAAGTCTCAGTATCCATATGGTA
CTCAAAACTGGAACTCCAGTCCCACACGATGGTACTCAAAACTGGAACTCCAGTCCCACA
CGATGGTACTCAAAACTGGAACTACAGTCCCACACGATGGTACTCAAAACTGGAACTACA
GTCCCACACGATGGTACTCAAAACTGGAACTACAGTCCCACACGATGGTACTCAAAACTG
GAACTACAGTCCCACACGATAGTACTCAAAACTGGAACTACAGTCCCACACGATGGTACT
CAAAACTGGAACTCCAGTCCCACACGATAGTACTCAAAACTGGAACTACAGTCCCACACG
ATAGTACTCAAAACTGGAACTACAGTCCCACACGATGGTACTCAAAACTGGAACTACAGT
CCCACACGATCTTCCGTTCTTTGCTGGCCTCCACGGGGACTGTATGAACATGGTACACAG
ACATTCATGCAGTCAAAACACATACACATAGACTAAAAAACAAAATAAAAATAAAGTTCA
AACAAACCCAAAACACTGGTTCACTCTAGCTGTGGTTTTAGACGGCTGGCATACTCTGTG
AATCTGTACAGCTTTTTCCCTTTTTTTCATTTGTTTTGTTTTGTTTTGTTTTTTGTTTGT
TTCACCTGTCAATATATCAGGAAATTCAATTAGATTTAAAAGACTTTTTTTTGATTTCTT
T
3' upstream sequence
ATGTATATAAGAGTTTTGTCTATATGTTTATGTGCACCATATGTACGCACAGAGTTCAAA
AGAGGACATTAGAGCCCCTGGAACTGGAGTTATAAGTAATTGTGAGCCACTGTGTGGGTG
ATGGAAACCAAACCCCAAACCCCCAAGCGGCAAGAGCTATTAACCTCTGAGTTCTCTCTC
AGCCTCAAAGAAGATCTTTCTGAAATTATTTTTTGTTGTTTGAGACTGGGTAGCTCTGGC
AGGCTATTTTGGAACTCACGGTATAGACCTGGTTGACTCCTGCCTTTTCCTGTTGACAGG
CATGTGCCACTCCATCCATCTGGGACCTGTTCACCTACTTCACCCTTAAAAAGTAGTTTA
CTACATTGCAAGCTGGCAGGAGCTGGCCAGGAGCTCAAGTGCAGCCTGTGGCCCTGTTCC
CTCTCTTAGAAGCACACTGTGCATCTGCCTTTTCCTACCCAAAGCATTTTTCTTTTTATT
GCTTTTATTTTAAGTGTGTGAGTGTTTTGCCTGCATGTGCGTCTGTGTACCATTTATGTA
CCTGATGCCAGCTGAAGGTTTGCATCCCCTAGCACTGAAGTTAGAGATGGTTGGGAGCCA
CCATATGCATGCTGAGAATAAAACTCTGCCTCTCTAGAAGAGCAGCCTGTGCCATTAACT
GCTCCAGCCTCCCAAATAATTTTTCTTAATATCTGGTCCAAAACTGCACTTCGGTTTCAC
TGTCTTTCTCACTATCACCTAAGCCTTGCACAGGTAGGCAATTTGTTATAGTTTCAGCAA
TGTCGGTCCTCACACTGAAAGCTACTTAATATCTACACAATATCTACTGAAATCCTGTTT
CAGCGGCAGTAAAAAATTCTGTTCTATGAATTCAACAGCAGTTCATAAGCAAATGAACTA
CATAGCTGAATAGGTCGGTAACTTAGTGTCCACTAGAGGGAAGCATATGCCCATAGAAGA
ACCTTTTAAATGCCCCGAGACTGTGAACCTCAGAAAAGAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Transcript ID ENSMUST00000146665
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 169 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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