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Target CDS Information

Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Cross Reference
MGI_trans_name Ppp1r42-005
OTTP OTTMUSP00000061377
OTTT OTTMUST00000065323
UniParc UPI0002467767
Uniprot/SPTREMBL H3BKX2
Vega_transcript OTTMUST00000065323, Ppp1r42-005
Vega_translation 178684, OTTMUSP00000061377
Definition codon_start:2
protein_id:ENSMUSP00000135564
translation:
XKKLMKLWKMDLNGNPVCLKPKYRDKLILTSKSLEFLDGKEIKDMERQFLMNWKASKDAK
KISKKRRSRSEDASNSYIRICP

Chromosome 1
Length
Position(start - end)
16,773
9,968,918 - 9,985,692
Orient to Chromosome minus
Link Location : (1:9968918-9985692)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Transcript ID ENSMUST00000147000
Reports
substitution
cSNPs1
Insertion24
Deletion22
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 9978820 (p.Tyr76Tyr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000147000)
KKLMKLWKMDLNGNPVCLKPKYRDKLILTSKSLEFLDGKEIKDMERQFLMNWKASKDAKK
ISKKRRSRSEDASNSYIRICP*
MSMv4 transcript
KKLMKLWKMDLNGNPVCLKPKYRDKLILTSKSLEFLDGKEIKDMERQFLMNWKASKDAKK
ISKKRRSRSEDASNSYIRICP*
homology100.00 (82 / 82)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Transcript ID ENSMUST00000147000
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CAGGTAGATCTCTGTGAGTTCGAGGCCAGCCTGGTCTACACAGTAAATGC
CAGACCAGTCAGGTCTACACAATGAGACCTTGTCAAAACTAAAACCAAACCAAAAAATAA
ATACAAACAAAATAAACAAACAGAAAAACAGCAACAACAACAAAAGAAGTAAAAGGAAAT
TATAACCCCAGTAAGATTATAATTTCAAAAGAAGTCCCTAGGCCCTAAAGAGATGAGCCA
GGCATAACTGCTCAATGTGGTCTCCAGGTGATGTACAGGCGAGTACTTTTTTTTTTCTGT
TTTGCAGTCTGACAGGATTTTCCCACATTCTTCATTTTAAAAAGGCAACAATGATGTTGC
CTGCAGTGCTGGCAGACTGTGTTGTTTAATTTGATGAACCAATGGGTTTTATTGGGACTA
CAGGAAGATAGGTGAAGGGTTACTTTCAGGAGCAGAAATGATTCAGACAGCTGCATCACC
AAAACCCTTCTCGAGCACGGGTGATGCTCCTGAAGCTGGGAGCCTGGAGCACACTGCCCA
GGCTACAGGCAGCTCAGCAGGCTGGGGAGTGTCCTTTCCAGGTGCCTCGGATGCTCTGAG
CCTCTCTCTGGCAGATGGGGTAGTCCCTGCTCCTTCCAGACAGCTTCTCGGCAACGGCTG
ATGAAGTGTGCTTACGCGCTACTCTTCAATTGCCTTCACCTGTAAACTTTCATGGATTCC
CCTGAGAATAGGGTATCTTCTAAAAGTAGGAAGTGTTTTCCTAACTGCAGATTGAGTTGA
TTTAGGGATGACATGATCAAGAGCAGCATGGTGATCCCTACTTTGCCTCCTCTAGCTTCC
TCATGACGAGTATACACAAAGCTGCTGGTCATATGAGTTCTACCTGGGGAGCTAGGGTGC
TGTAGAAATCATTAACCACCTTGAAAAGCACTTGCACAAGAGTATGAATAATCATAAAAT
CCCCATGCCTTCTCTTTTCTTTCCTGACTACAGGACTTGGAGCTTTTACT
1 EXON 1 9,985,592 9,985,692 - 1 101
GAAAAAACTGATGAAGCTGTGGAAAATGGATCTAAATGGAAATCCTGTTTGTCTTAAACC
AAAATACAGGGACAAACTGATACTGACGTCCAAGTCACTGG
INTRON 1 - 2 9,978,948 9,985,591 6,644
GTGAGTGTTTTACATTAACCCAATT..........TTTTTAACATACATGTCTTCTCCAG
2 EXON 2 9,978,816 9,978,947 1 1 132
AATTTCTTGATGGAAAAGAAATAAAAGATATGGAAAGACAATTCCTAATGAATTGGAAAG
CATCCAAAGATGCCAAGAAAATCAGCAAGAAAAGGAGGAGCAGAAGTGAGGATGCAAGCA
ACTCCTACATAA
INTRON 2 - 3 9,968,932 9,978,815 9,884
GTAAGTGCTCACCACTCGCCACCGT..........GGTGTGTTTTTGTTTGTAAATACAG
3 EXON 3 9,968,624 9,968,931 1 - 308
GAATCTGTCCTTGAAGGAATCTGAAAGCTCGCTAACAAAAAACGATATCCATGAACCTCA
CCTTCTCCAAAATCCAAAAGTAAAGGAAAATTTGTCTGAGAAAAAGGAGTAAATTCAGCC
TCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACT
TCACTTATCTCGGTGTGTAAGTTGTTTGATTTGTTTCTTTATAGAATCTGAGACTTTGCT
TTATGTGCGTGAATTCTGGGATCTATTTACTTTATTAGCTGTTAAATAAAATTTGCCAGG
AAATAAAA
3' upstream sequence
TGTGGTTTCGTATTATGTGGTTTCTTATTCAACACAAGTCCTTTTGAATCAAGGAAATCT
GAGTGTGCGTTCTAAAGCCTAAAGCCCATTACAGTCTTAGAATCACCGTGATTCACTGAC
AAGTCCACGTTTCGGTCCATCGTGGTATAAAAAGTCCTGCGTTGCTATCTTACTGTTTGG
TATTCCCGACGTGGAAAGTTAGAAATCTGCAGCGAAATGTTCGCGAATCTATAAACTAGC
CTTGCCCTTAGTGACATTTCATATCTGATACTCAGAACCTTCAAAGAGGAAACCGCGCTG
ATTCCTATCCCGGTTCAGAGAATCTGGCCGGGCTGCGGCGAGAACCGCGTCCGCCATGGG
CTGCAGCACTGAGTCCCGCCGGCGCCGGGGCCAGCCTGAGCCTGTGGGCGAGCGGGTGCC
GAGGCGGGAAGGCGGCCGTGGCGGTGGCGGGTCTCTAGGTCACGGTGTACTGAGGAAAGG
CTTCTACTGCAAGAATCTTCACCTTGTAGAATTAAAGGCGGACGGGGACGCACACGCGAC
GACTCTGCTCCTGAAGTCCCGCTGTACTAAACCCCCGGGTCCCGTCCCAGCTGGACCACC
GTAAACTACTCTCAACCTTCCGGCCAGAGGGGGCGGGGCCAGGCGTCCGCCCCACCCCCG
AGCGGTTTGATTGATGAGTCTGTCCGCCGAGGGGGCGGCTCCGGGACGCCGCTGCCCCTA
ACCCAAGGGCTCGGGTGGGAGACCCTCTCGGCCCGACGTGGCTTTGCTGGCTTCGGACGC
CCACATAAAAGGCGGCGCAGAGCCTGGACAAGGATGGAGTGACCCACCCGCTCGACGCCC
TTGGCCGCCTATCCCTGCTCAGCCGAACCCCGCACGGCCGCTGCGGTGGGGGGAGGAAAG
GTGAGGTGACGCCAAGTCCGAGGTGAGGCCGAGTCCTGCAGCCCCGTTTCCCCGGGCGGG
CGGGCGGGCCGGCGGGCGGGCGGGGTGTGTCAGCGGGGAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Transcript ID ENSMUST00000147000
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 82 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information