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Target CDS Information

Gene Symbol (Gene ID) Rgs20 (ENSMUSG00000002459)
Cross Reference
EMBL AC102242, AC102311, AC157807
GO GO:0005096, GO:0005737, GO:0005794, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Rgs20-004
OTTP OTTMUSP00000037487
OTTT OTTMUST00000072705
UCSC uc007afl.2
UniParc UPI0001611447
Uniprot/SPTREMBL D3Z4Z8
Vega_transcript OTTMUST00000072705, Rgs20-004
Vega_translation 178623, OTTMUSP00000037487
Definition protein_id:ENSMUSP00000117380
translation:
MPSLSQENQGYLEEHLTRQAAQAQLLPLFRAEKDYNPSIDQDTEDKEGSQAVTGVKPEGS
ERTEMRMRQMCGGSETQGPAPSQQGGRGSNACCFCWCCCCTCSCLTVRNQEDQRPQRASH
EIRTDIPACEESPTPTLEEVCAWAQSFDNLMVTPAGRNAFREFLRTEFSEENMLFWMACE
ELKREANKSTIEEKARIIYE

Chromosome 1
Length
Position(start - end)
157,834
4,912,342 - 5,070,177
Orient to Chromosome minus
Link Location : (1:4912342-5070177)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rgs20 (ENSMUSG00000002459)
Transcript ID ENSMUST00000147158
Reports
substitution
cSNPs9
Insertion92
Deletion108
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num5
synonymous substitutions 4912461 (p.Arg161Arg), 4923945 (p.Cys71Cys), 4923960 (p.Arg66Arg), 5070031 (p.Ser49Ser),
non-synonymous substitutions 4923919 (p.Ala80Val), 4923923 (p.Pro79Ser), 4923973 (p.Arg62Gln), 5070111 (p.Ala23Thr), 5070113 (p.Gln22Arg),
B6 transcript
(ENSMUST00000147158)
MPSLSQENQGYLEEHLTRQAAQAQLLPLFRAEKDYNPSIDQDTEDKEGSQAVTGVKPEGS
ERTEMRMRQMCGGSETQGPAPSQQGGRGSNACCFCWCCCCTCSCLTVRNQEDQRPQRASH
EIRTDIPACEESPTPTLEEVCAWAQSFDNLMVTPAGRNAFREFLRTEFSEENMLFWMACE
ELKREANKSTIEEKARIIYE
MSMv4 transcript
MPSLSQENQGYLEEHLTRQAARTQLLPLFRAEKDYNPSIDQDTEDKEGSQAVTGVKPEGS
EQTEMRMRQMCGGSETQGSVPSQQGGRGSNACCFCWCCCCTCSCLTVRNQEDQRPQRASH
EIRTDIPACEESPTPTLEEVCAWAQSFDNLMVTPAGRNAFREFLRTEFSEENMLFWMACE
ELKREANKSTIEEKARIIYE
homology97.50 (200 / 200)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rgs20 (ENSMUSG00000002459)
Transcript ID ENSMUST00000147158
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ATGTTTGAGCAAAAGCTGGGTTACTGTTCACTGCATGTCTTTACATCCAC
AACAACCGAAAACAAGAAGAGCAGGACATAAAAAACATGCAGTGGGGGCTGGCGGGATGG
CTCAGTGGTTAAGAGTGCCGACTGCTCTTCCGGAGGTCCCAAGTTCAAATCCCAGCAAAC
ATGGTGGCTCACAACCATCCGTAACAAAATCTGATACCCTCTTCTGGAGTATCTGAAGAC
AGCTACAGTGTACTTACATATAATAAATAAATACATCTTTTTTTAAAAATGCAGTTTTGA
GAGGAAAGAAATGAGTAGCTTACTTAGAGTTGCAGACAAGAAAAGTACAATGATGACATT
ATCAGTCTGACATGATTTAGAATCACATAGATGAACCCCTTGGTATGTCTGAGACAGACA
TTCTAAATTGGGTTAATTGAAATGGGAAGACCCATCCTACATGTGGCTGATACTATAACA
TGGCCAGGAGTCAAGGACTAACTAATTTGGCCAAATTCTTTGGACACAGGCAGAATACAG
TCAGTTCATTGCCTGCTGTTCTCCAGGAGTTATCCACAGTCAGCAACTCAGGCCTACTTG
CTTTCTAGTCTAAATCTTGAGTGCTTCCCTCCCTGTGGGCACAACTCCAGCATTGTTTCA
CGGAGCTCTGGGGGTTCGATTTCATAAAGGCACAAAGGCATGAGGCAAAATCAGAAGGGT
ACCATGAACAGATGGGGAGCTGCCTCAAAGGTCCCCTCATATGGCTTTCACTACACATTC
ATTTGTCATTCCTGAAGCTTGTTCTAACTTGAGACACAGGGCTACAGCCGAGTGACTCAC
AAAGAAGAAACTTTCTTTACTCACCTTCAGAGGGCAGTCTTGGCATACTCACTCAGTAAG
CAGATCTAGCTGGAACAGACCGTTAAGATAGGTGGATAAGCCACTACTGATCCACAGAAG
GGATCAGCCTTTGGCTTTGCTTTGAGTAACTTTGCAAGAAGGTCCACAGC
1 EXON 1 5,070,010 5,070,282 - 0 273
AGACTCAGACATGGGCCAGCATTAGAGAGCCAAAGAAAAGAGAGGATCTACAGGTATTGG
TAAAACCAGATGACACTATTCCTGTGGGGCATTTGTTAGGAAAGCATGCCCAGCCTTTCC
CAAGAAAACCAAGGGTACCTAGAAGAGCATCTTACCAGGCAGGCTGCACGGACACAGTTG
CTGCCCCTCTTCAGAGCAGAGAAAGATTATAATCCCAGTATTGACCAAGACACAGAAGAT
AAAGAGGGATCTCAAGCCGTGACTGGTGTCAAG
INTRON 1 - 2 4,923,990 5,070,009 146,020
GTAAGATGATCTTCACAAGACCCAC..........TCTAACTAGTCTTTTTCTTTTGCAG
2 EXON 2 4,923,847 4,923,989 0 2 143
CCTGAGGGATCTGAGCAGACGGAAATGCGAATGCGGCAGATGTGTGGCGGAAGTGAGACC
CAGGGCTCTGTCCCAAGCCAGCAGGGTGGCCGGGGCTCCAACGCCTGCTGCTTCTGTTGG
TGCTGCTGCTGCACCTGTTCTTG
INTRON 2 - 3 4,916,981 4,923,846 6,866
GTAAACTTGGCAGCCTTTGACTCAG..........TAATTAATTGTCTTGTTTCTTACAG
3 EXON 3 4,916,897 4,916,980 2 2 84
CCTCACTGTCAGAAACCAAGAAGACCAGAGACCCCAAAGAGCCTCCCATGAAATCAGAAC
AGACATTCCAGCATGTGAAGAAAG
INTRON 3 - 4 4,912,549 4,916,896 4,348
GTGAACTCTTGCATTTTATTAGCTC..........TCCTTTTCGTTTGACAACTGCTCAG
4 EXON 4 4,912,342 4,912,548 2 - 207
CCCCACGCCTACTCTGGAAGAAGTCTGTGCCTGGGCCCAGTCTTTTGATAACCTGATGGT
CACTCCAGCCGGAAGAAATGCATTCCGAGAATTTCTTCGAACAGAATTCAGTGAAGAAAA
CATGCTCTTCTGGATGGCCTGTGAAGAACTGAAAAGGGAAGCTAATAAAAGCACTATTGA
GGAGAAAGCAAGGATAATCTATGAGGA
3' upstream sequence
CTATATTTCTATTCTCTCTCCTAAAGAGGTGTGTGTCTCATTAGAGCCATCGCTAAACTG
CCGGTTGTGTTTGGTCTTTTTGCACAGTCCTGGGCTCTGTCCACTCAATTGTAGGGTTGG
TGGGTCAAGTTGTAGGGTTGGTGGGTCCTGTGTCCACTCTGTCAGAGCTCCGGCGAGGCT
GGATGTGGGAGTTTGACTGTACTTACTCCATGCCATCTCTGGCAGGTGTTGGACCTTATG
GAAGCCAGAGGACACCACTCCAGGGGTGGGAAAGCATAGTCTAAGGCACAGTACAGCTGG
TTCAGATGCACCCAGCCCTAAGAAGAGGCTGGGGCCGTGGGGTTCTCAGGCTCTTGGGCA
CACAGGGAACACTGGAAATCAAGGAAGAGCTTCAAACAGAATCTGGGCAGGGGGGTTAGA
TCTAGCCTGGGGCAGCGAGGGTGGAGAAGGGGGAGCTCCTGCTGGTCCCTCAGGGAGACT
CCTTGGCTTAACGATCTTGGGCTTGGTGGCTGTCATGGCTGGGAGAGAGGACTTCTACAA
GAGATTAAAGAGTGGCTCTGTAGGCAAAGGCCTTCTCCATGGCTCCCCATGACAGATCCC
GATGAAAAGAGATAGTCTGTGGTTTCAAATCATTTATTGCCATGGTGGAAAGTAGATATG
TAAAACCATACCACCCTTCTTGGGGTGGGCCTGAGTAAATACCTTTTGCAGGGAGGAATG
TCTGGGAAGGAACGCTTACTGGCTATGCCCTCCAAGCCTCTTCTATGTACCCCACTACAT
GGAGATCTGTCTTGAACCTATGTGACCACAGGTCACATTCCTTACATGTGGAGGGGCTTG
GGGCATTGCTCTTACATGACTGAGGGCCACAAATCTATGAAAGGCTGCGGCGTGGGAGCA
GGCAAAGCTTCTACAGTCCCTTCGGGGTCTCCAGGGCTTCTAGCCTTAGCTCAACCAGGG
ATCATGCTACCTTTCATGGTCTCATTCAGGTCCATCCAAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Rgs20 (ENSMUSG00000002459)
Transcript ID ENSMUST00000147158
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 200 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information