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Target CDS Information

Gene Symbol (Gene ID) Car14 (ENSMUSG00000038526)
Cross Reference
EMBL AC092855
GO GO:0004089, GO:0006885, GO:0015670
goslim_goa GO:0003674, GO:0006810, GO:0008150, ...show all
MGI_trans_name Car14-003
OTTP OTTMUSP00000041814
OTTT OTTMUST00000052681
UniParc UPI000173A7FD
Uniprot/SPTREMBL D3Z4J8
Vega_transcript Car14-003, OTTMUST00000052681
Vega_translation 188146, OTTMUSP00000041814
Definition protein_id:ENSMUSP00000117464
translation:
MKLHCSETTGPHGQDHWPTSYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEP
LDLHNNGHTVQLSLPPTLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHQINSEATAAELHV
VHYDSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRYK

Chromosome 3
Length
Position(start - end)
2,375
95,899,740 - 95,902,116
Orient to Chromosome minus
Link Location : (3:95899740-95902116)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Car14 (ENSMUSG00000038526)
Transcript ID ENSMUST00000147962
Reports
substitution
cSNPs0
Insertion9
Deletion13
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000147962)
MKLHCSETTGPHGQDHWPTSYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEP
LDLHNNGHTVQLSLPPTLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHQINSEATAAELHV
VHYDSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRYK
MSMv4 transcript
MKLHCSETTGPHGQDHWPTSYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEP
LDLHNNGHTVQLSLPPTLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHQINSEATAAELHV
VHYDSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRYK
homology100.00 (171 / 171)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Car14 (ENSMUSG00000038526)
Transcript ID ENSMUST00000147962
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCGATCGGGATTTCTAGTCCCGTGGGGGAGCGCACACCAGCCACATTCCT
GAGACGCCACGCAGCCTCCATGCTCCACTAGCAAACTCAGTTCCACCACAGCAAGTTTCA
CTTGATCCCACAGGACCTGCCTGGACCCTTTGTTGGGTGGGCGGGAAGCCCCTGGACCCC
TCACCCACCTGGTCACATGGCCTTTCTATGGCCCCTCCCCTCTCTTTCTTTGGAGTCCGC
CTTTTTCTCATGGTGACAGTAATTGTTTCTACAGTCACCCATCACTCCTCCTGCCCGGCC
TCTCTGCTAGGGGTCAGTGTCCTCTTCAGTGACAAAAGGCGCCCTAGATCTGGGCTCCCT
GGGGAGGGAGGTGGCTGGATCTGGTAGTTAGAATGCTGTCTCTCCCTGGTGCTGCGACAA
CCCCTCCCCCGCTGTGCACACAAATGGGCTTTATCCGGCAAACAAAACCGCACCCCCACC
CCAGGCTACACAGGCACGTGGACCTAAGCCTTACCAAGGGAAGGGGGTGGTGACAGGCGC
CAGAGAAAGACGAGGCAGAAGACAAATATTCTCCTCGCCCCACTTCTTGCTCTCCACAAT
CCAGATTTTAAAGTTTGACTTTCCACTCCCCACCTGCTCCCTGAGCCTCCAACTTCTGTT
CTCCTATCTCCCGAATCTGAATTCTTTCTGGTTCCAACCAGCTCAACTTCTCTTGGTTTC
AGAAACAGGTTCCCCACCAGCTGTCCCATACCACACAGGGATGTGCTCCTCAGGCAGGGG
AATGAGAACACGGTGTCCTGGGAGGGAGAGGTGCGAAACCCCCCTTCCCTGACTGAGAGT
TCCAGGGGACACCCGTACGAGCGGCAGTGTAAATAGCAAAGGAAGAGCTCACTCCAGGGT
CCTGAGCCAAGGCCAGGGCGCTGGGCTCTGCAGGGCCATCCTGCATGCCTAATCCGCTAT
TTAAGGAGCTGCTCGGCTGCAGCCCAGGCACCACCCCCCTCCTCACGTAC
1 EXON 1 95,904,320 95,904,685 - - 366
ACCGGTTTCGAGCCACCTTAAAAGCGGGAGGCAACTGTGAAGTTGCTGGCCAGTAAGTGG
TGTGGAGATTACGAAGGGACATACGGAGAGGGCAGAGAGAGGAAGAGAGAGAAAGTGAGA
GAGGAAGAAATTTATCCTGGGATCCAGAAGTTCGTGTTAACCTGTGGAAAATCAAGTCCC
TGGAAGTCTGCAGAGACAGAGACAAGAAGAAAAGAGATAGAACGCCAGAAACTCCTCTCT
CTCTCTCCCTCTCCACCTCTCTCTTCTAAACCCCAAATTCCTGGTCCCTTGTACCCCATT
GTGGGGATAATATGTTGTTCTTCGCTCTCCTGTTAAAGGTGACTTGGATCCTGGCTGCAG
ATGGGG
INTRON 1 - 2 95,902,132 95,904,319 2,188
GTAGGTACAACTGGGTCTGTGCTAA..........CACAGCCCAAATCCCTCTCTTACAG
2 EXON 2 95,902,111 95,902,131 - 0 21
GTCACCACTGGACATATGAAG
INTRON 2 - 3 95,901,481 95,902,110 630
GTGAGATCGGAACTGCACATGGATT..........TCTATTTCCTCTTCCCCTCATTCAG
3 EXON 3 95,901,459 95,901,480 0 1 22
CTTCATTGTTCTGAAACTACAG
INTRON 3 - 4 95,901,273 95,901,458 186
GTGAGTGAAAGCCACCACTCTCCCA..........CTATAGTAACTTACCCCTCCACCAG
4 EXON 4 95,901,093 95,901,272 1 1 180
GCCCACACGGTCAGGACCATTGGCCAACCTCTTATCCTGAGTGTGGAGGCGATGCCCAGT
CCCCCATCAATATCCAGACAGACAGTGTGATATTTGACCCCGATCTGCCTGCTGTACAGC
CCCATGGATATGACCAGCTTGGGACTGAGCCTTTGGATCTACACAATAATGGCCATACAG
INTRON 4 - 5 95,900,386 95,901,092 707
GTAAAAGAGCCAGCTTCAAATAACT..........ATCCTAGCCTGCTCTTTCCCCACAG
5 EXON 5 95,900,243 95,900,385 1 0 143
TGCAGCTTTCCCTGCCCCCAACCCTGCACCTGGGTGGACTGCCCCGAAAATACACAGCAG
CCCAGCTCCACCTGCACTGGGGTCAGAGAGGATCCCTCGAGGGATCAGAGCACCAGATCA
ACAGTGAAGCCACGGCTGCGGAG
INTRON 5 - 6 95,900,027 95,900,242 216
GTACCGGGGAACTCGGGCTAGGACA..........TTTGTTTCCTTCTGTCCCCCTGCAG
6 EXON 6 95,899,931 95,900,026 0 0 96
CTCCACGTGGTTCACTATGACTCCCAGTCCTACAGCAGCTTGAGTGAGGCAGCTCAGAAG
CCACAGGGCCTGGCTGTCCTAGGCATCCTCATTGAG
INTRON 6 - 7 95,899,807 95,899,930 124
GTCAGCATCCCCCAGCCCCTCTCAG..........GTCTATCGGCACATTGCCTTTGCAG
7 EXON 7 95,899,740 95,899,806 0 - 67
GTGGGCGAGACTGAGAATCCAGCTTATGATCACATTCTGAGTCGTCTACATGAAATAAGA
TACAAAG
3' upstream sequence
GTGAGCCCTAAAAACCTACAGTAAGAATTCAACTGCAAGGAAACGTTCAAGCCCTGACCT
GAGAGGCTTGGGAGAGGGCGGGGAGAAAGCAGTGAATTCTGCTCAGAGGAATCCTGTCCA
GGAAGCCTGACCCTCGCTCCGTCCTCCCCAGATCAGAAGACCTCTGTGCCTCCCTTCAGC
GTGAGAGAGCTGTTCCCCCAACAGCTGGAGCAATTCTTCCGCTACAACGGCTCACTCACA
ACTCCCCCCTGCTACCAGAGTGTGCTCTGGACAGTCTTCAACAGAAGGGCCCAGATTTCA
ATGGGACAGGTGTGTGAGTAGTGGAGAGGGAATACTGCTTGAACCTCAGACCCTTTCCAA
CGTCTTGGGGTGATTTCTCCATGTCTGCTCCCCAGTTAGAGAAGCTCCAGGAGACATTGT
CCTCTACAGAAGAGGACCCCTCTGAGCCCCTTGTACAGAACTACAGAGTCCCCCAGCCTC
TCAACCAGAGGACCATCTTTGCTTCTTTCATCCAAGGTGACTTGCAGGGCTCAGAAGAGA
TGGGGAACTGGGGGGCTCAAAGGCGTGAAATAGTGAACCCCTGGGAAGGAAAAGGCTGAG
GGGAAGGGCTCCCAGTACACCTCTGGACCGGGAATCATCCCCAGGAAAGGACACCCAGGT
CAATTCTCAGGTGTGGAAGCAGTGCTCCCAAGTGGGGGAAATGTTCTGAAACTCCTCTAA
CCCAAGTTCCCTTCCTCTGCAGCAGGACCACTGTATACCACAGGTAAGAGGGTCCTATGT
GGCAGCACGAGGCGGGCCCCAGCAAAGATGGATCAGGACCTGTTAGGCTGAGCTGACATC
CTTATTTCCCCCAGGAGAGATGCTGGGTCTAGGTGTGGGAATCTTGGCTGGATGTCTTTG
CCTTCTGCTGGCTGTTTATTTCATCGCTCAAAAAATTAGGTGAGATCCTACTTTCTATTT
CTGCAGTATTTATTTTCTACTAAAAAGCATTCTCAGAGGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Car14 (ENSMUSG00000038526)
Transcript ID ENSMUST00000147962
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 171 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information