MoG+ -Mouse Genome database with high added value-

name	Lmna (ENSMUSG00000028063)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Lmna note : lamin A [Source:MGI Symbol;Acc:MGI:96794]

name	Lmna (ENSMUSG00000028063)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000029699

name	Lmna (ENSMUSG00000028063)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000120377

name	Lmna (ENSMUSG00000028063)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000149068

name	Lmna (ENSMUSG00000028063) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS38482.1 Uniprot/SWISSPROT:P48678 RefSeq_peptide:NP_001002011 RefSeq_mRNA:NM_001002011.3 RefSeq_mRNA_predicted:XM_006501073 RefSeq_peptide_predicted:XP_006501136.1 Vega_transcript:Lmna-001 Vega_transcript:OTTMUST00000075092 UCSC:uc008pvj.3 Fantom:1200006N04 Fantom:4833421L13 Fantom:G530116F06 Fantom:I730033H02 Fantom:I830006I05 Fantom:I830008L05 Fantom:I830012N14 Fantom:I830078J09 Fantom:I830081L20 Fantom:I830087H20 Fantom:I920188N09 EMBL:AK004619 EMBL:AK147150 EMBL:AK149998 EMBL:AK150391 EMBL:AK150501 EMBL:AK150624 EMBL:AK152539 EMBL:AK152646 EMBL:AK152846 EMBL:AK161221 EMBL:AK167858 EMBL:BC015302 EMBL:BC094020 EMBL:CH466547 EMBL:D13181 EMBL:D14850 EMBL:D49733 EMBL:DQ832702 EMBL:DQ832703 EMBL:X14170 GO:GO:0005198 GO:GO:0005515 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0005634 GO:GO:0005635 GO:GO:0005635 GO:GO:0005638 GO:GO:0005654 GO:GO:0005654 GO:GO:0005737 GO:GO:0005737 GO:GO:0006997 GO:GO:0006998 GO:GO:0007283 GO:GO:0007517 GO:GO:0007517 GO:GO:0016363 GO:GO:0030010 GO:GO:0030334 GO:GO:0030951 GO:GO:0031965 GO:GO:0031965 GO:GO:0034504 GO:GO:0035105 GO:GO:0048471 GO:GO:0048471 GO:GO:0055015 GO:GO:0071456 GO:GO:0071456 GO:GO:0090201 GO:GO:0090343 GO:GO:0090343 GO:GO:1900180 GO:GO:2001237 MGI_trans_name:Lmna-001 PDB:1UFG Vega_translation:187568 Vega_translation:OTTMUSP00000039297 goslim_goa:GO:0003674 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0006605 goslim_goa:GO:0006810 goslim_goa:GO:0006913 goslim_goa:GO:0006950 goslim_goa:GO:0007010 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 goslim_goa:GO:0061024 protein_id:AAH15302.1 protein_id:AAH94020.1 protein_id:ABI16251.1 protein_id:ABI16252.1 protein_id:BAA02476.1 protein_id:BAA03578.1 protein_id:BAA08569.1 protein_id:BAA08570.1 protein_id:BAA08571.1 protein_id:BAB23415.1 protein_id:BAE27717.1 protein_id:BAE29226.1 protein_id:BAE29519.1 protein_id:BAE29614.1 protein_id:BAE29714.1 protein_id:BAE31294.1 protein_id:BAE31384.1 protein_id:BAE31539.1 protein_id:BAE36246.1 protein_id:BAE39876.1 protein_id:CAA32372.1 protein_id:EDL15275.1 OTTP:OTTMUSP00000039297 OTTT:OTTMUST00000075092 Reactome:R-MMU-109581 Reactome:R-MMU-111465 Reactome:R-MMU-1640170 Reactome:R-MMU-2555396 Reactome:R-MMU-2980766 Reactome:R-MMU-2993913 Reactome:R-MMU-2995383 Reactome:R-MMU-2995410 Reactome:R-MMU-352238 Reactome:R-MMU-4419969 Reactome:R-MMU-5357801 Reactome:R-MMU-68875 Reactome:R-MMU-68882 Reactome:R-MMU-68886 Reactome:R-MMU-69278 Reactome:R-MMU-75153 UniParc:UPI0000029392
definition	note : transcript_id=ENSMUST00000029699 protein_id : ENSMUSP00000029699 translation : METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGGGSVTKKRKLESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVAMRKLVRSLTMVEDNEDDDEDGEELLHHHRGSHCSGSGDPAEYNLRSRTVLCGTCGQPADKAAGGAGAQVGGSISSGSSASSVTVTRSFRSVGGSGGGSFGDNLVTRSYLLGNSSPRSQSSQNCSIM

name	Lmna (ENSMUSG00000028063) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS50951.1 Uniprot/SWISSPROT:P48678 RefSeq_peptide:NP_001104572 RefSeq_mRNA:NM_001111102.2 Vega_transcript:Lmna-002 Vega_transcript:OTTMUST00000075093 UCSC:uc008pvl.3 Fantom:1200006N04 Fantom:4833421L13 Fantom:G530116F06 Fantom:I730033H02 Fantom:I830006I05 Fantom:I830008L05 Fantom:I830012N14 Fantom:I830078J09 Fantom:I830081L20 Fantom:I830087H20 Fantom:I920188N09 EMBL:AK004619 EMBL:AK147150 EMBL:AK149998 EMBL:AK150391 EMBL:AK150501 EMBL:AK150624 EMBL:AK152539 EMBL:AK152646 EMBL:AK152846 EMBL:AK161221 EMBL:AK167858 EMBL:BC015302 EMBL:BC094020 EMBL:CH466547 EMBL:D13181 EMBL:D14850 EMBL:D49733 EMBL:DQ832702 EMBL:DQ832703 EMBL:X14170 GO:GO:0005198 GO:GO:0005515 GO:GO:0005634 GO:GO:0005635 GO:GO:0005638 GO:GO:0005654 GO:GO:0005737 GO:GO:0006997 GO:GO:0006998 GO:GO:0007517 GO:GO:0030010 GO:GO:0030334 GO:GO:0030951 GO:GO:0031965 GO:GO:0034504 GO:GO:0035105 GO:GO:0048471 GO:GO:0055015 GO:GO:0071456 GO:GO:0090201 GO:GO:0090343 GO:GO:1900180 GO:GO:2001237 MGI_trans_name:Lmna-002 PDB:1UFG Vega_translation:187569 Vega_translation:OTTMUSP00000039298 goslim_goa:GO:0003674 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0006605 goslim_goa:GO:0006810 goslim_goa:GO:0006913 goslim_goa:GO:0006950 goslim_goa:GO:0007010 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 goslim_goa:GO:0061024 protein_id:AAH15302.1 protein_id:AAH94020.1 protein_id:ABI16251.1 protein_id:ABI16252.1 protein_id:BAA02476.1 protein_id:BAA03578.1 protein_id:BAA08569.1 protein_id:BAA08570.1 protein_id:BAA08571.1 protein_id:BAB23415.1 protein_id:BAE27717.1 protein_id:BAE29226.1 protein_id:BAE29519.1 protein_id:BAE29614.1 protein_id:BAE29714.1 protein_id:BAE31294.1 protein_id:BAE31384.1 protein_id:BAE31539.1 protein_id:BAE36246.1 protein_id:BAE39876.1 protein_id:CAA32372.1 protein_id:EDL15275.1 OTTP:OTTMUSP00000039298 OTTT:OTTMUST00000075093 Reactome:R-MMU-109581 Reactome:R-MMU-111465 Reactome:R-MMU-1640170 Reactome:R-MMU-2555396 Reactome:R-MMU-2980766 Reactome:R-MMU-2993913 Reactome:R-MMU-2995383 Reactome:R-MMU-2995410 Reactome:R-MMU-352238 Reactome:R-MMU-4419969 Reactome:R-MMU-5357801 Reactome:R-MMU-68875 Reactome:R-MMU-68882 Reactome:R-MMU-68886 Reactome:R-MMU-69278 Reactome:R-MMU-75153 UniParc:UPI00000279E2
definition	note : transcript_id=ENSMUST00000120377 protein_id : ENSMUSP00000113093 translation : METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQSQGGGSVTKKRKLESSESRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVAMRKLVRSLTMVEDNEDDDEDGEELLHHHRVSGSRR

name	Lmna (ENSMUSG00000028063) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Lmna-004 Vega_transcript:OTTMUST00000075095 Uniprot/SPTREMBL:D3YUF7 EMBL:AC102388 EMBL:AC145168 GO:GO:0005198 GO:GO:0005515 GO:GO:0005634 GO:GO:0005635 GO:GO:0005638 GO:GO:0005654 GO:GO:0005737 GO:GO:0006997 GO:GO:0006998 GO:GO:0007517 GO:GO:0031965 GO:GO:0034504 GO:GO:0035105 GO:GO:0048471 GO:GO:0055015 GO:GO:0090201 GO:GO:0090343 GO:GO:1900180 GO:GO:2001237 MGI_trans_name:Lmna-004 Vega_translation:187571 Vega_translation:OTTMUSP00000039300 goslim_goa:GO:0003674 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005635 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0006605 goslim_goa:GO:0006810 goslim_goa:GO:0006913 goslim_goa:GO:0006950 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 goslim_goa:GO:0061024 OTTP:OTTMUSP00000039300 OTTT:OTTMUST00000075095 UniParc:UPI00001774D0
definition	note : transcript_id=ENSMUST00000149068 protein_id : ENSMUSP00000120784 translation : METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELK

name
type	misc_feature
link
xref
definition	note : contig AC145168.5 57009..217058(1)

name	Lmna (ENSMUSG00000028063)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000075096 Vega_transcript:OTTMUST00000075096 MGI_trans_name:Lmna-005 OTTT:OTTMUST00000075096
definition	note : processed_transcript note : transcript_id=ENSMUST00000135494

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Lmna (ENSMUSG00000028063)
Transcript ID	ENSMUST00000149068

Reports
substitution
cSNPs	1
Insertion	8
Deletion	13
SNPs	+1kb 88510099(c.-6996G>C), 88510292(c.-7189T>C), 88510744(c.-7641C>T), 88511500(c.-8397T>C), 88511573(c.-8470A>G), 88512019(c.-8916T>C), 88512156(c.-9053G>A), 88512360(c.-9257A>C), 88512566(c.-9463A>G), 88512593(c.-9490A>G), 88512961(c.-9858G>T), 88513033(c.-9930C>T), 88513104(c.-10001A>G), 88513349(c.-10246G>A), 88513503(c.-10400T>C), 88514057(c.-10954C>T), 88514408(c.-11305C>T), 88514491(c.-11388C>G), 5'UTR CDS 88502789(c.315G>A), 3'UTR INTRON 88503609(c.-283-223T>C), 88504004(c.-284+165G>A), 88504557(c.-358-314A>G), 88504870(c.-358-627G>A), 88504935(c.-358-692A>G), 88505056(c.-358-813C>T), 88505069(c.-358-826C>T), 88505138(c.-358-895C>T), 88505185(c.-358-942T>A), 88505188(c.-358-945T>C), 88505208(c.-358-965G>A), 88505223(c.-358-980T>C), 88505313(c.-358-1070G>A), 88505418(c.-358-1175G>A), 88505444(c.-358-1201A>G), 88505638(c.-358-1395T>C), 88505785(c.-358-1542T>C), 88506003(c.-358-1760G>A), 88506164(c.-358-1921C>G), 88506191(c.-358-1948G>C), 88506204(c.-358-1961G>A), 88506615(c.-358-2372A>G), 88506824(c.-358-2581A>G), 88507257(c.-359+2624A>G), 88507294(c.-359+2587G>A), 88507580(c.-359+2301A>G), 88507733(c.-359+2148C>T), 88507789(c.-359+2092C>T), 88507828(c.-359+2053A>G), 88508375(c.-359+1506C>T), 88508528(c.-359+1353C>T), 88508538(c.-359+1343G>T), 88508540(c.-359+1341T>G), 88508552(c.-359+1329G>A), 88508641(c.-359+1240G>A), 88508760(c.-359+1121A>G), 88508898(c.-359+983G>A), 88509241(c.-359+640T>G), 88509537(c.-359+344A>T), 88509538(c.-359+343G>A), 88509546(c.-359+335A>G), 88509788(c.-359+93A>G), -1kb 88497776(c.4977C>T), 88497848(c.4905G>A), 88498876(c.3877T>A), 88498933(c.3820A>G), 88498935(c.3818T>A), 88498951(c.3802C>T), 88498991(c.3762C>A), 88499756(c.2997G>A), 88499979(c.2774T>C), 88500048(c.2705T>C), 88500075(c.2678A>T), 88500126(c.2627T>C), 88500151(c.2602A>G), 88500344(c.2409G>A), 88500637(c.2116T>C), 88500719(c.2034C>T), 88500740(c.2013G>C), 88500872(c.1881G>A), 88500925(c.1828A>G), 88500952(c.1801A>G), 88501005(c.1748G>A), 88501235(c.1518T>C), 88501408(c.1345G>A), 88501435(c.1318T>C), 88501625(c.1128T>A), 88501647(c.1106T>G), 88501648(c.1105C>T), 88501793(c.960C>T), 88501874(c.879C>T), 88502191(c.562A>G), 88502282(c.471A>G), 88502493(c.260T>C), 88502540(c.213T>C), 88502573(c.180A>T), 88502628(c.*125A>T),
Insertions	+1kb 5'UTR CDS 3'UTR INTRON 88504119 (c.-284+49dupA), -1kb 88497974 (c.4778_4779insT), 88498648 (c.4104_4105insAT), 88498652 (c.4100_4101insATT), 88498707 (c.4045dupA), 88498714 (c.4038_4039insAA), 88499075 (c.3677_3678insCT), 88499803 (c.2949_*2950insCTC),
Deletions	+1kb 88510788 (c.-7686delG), 88511216 (c.-8115_-8114delCA), 88512751 (c.-9652_-9649delTTTT), 5'UTR CDS 3'UTR INTRON 88504659 (c.-358-419_-358-417delAAA), 88504665 (c.-358-428_-358-423delAACAAA), 88504706 (c.-358-466_-358-464delACC), 88505008 (c.-358-771_-358-766delGTGGCA), 88505248 (c.-358-1008_-358-1006delACT), 88506920 (c.-358-2681_-358-2678delACAC), 88509226 (c.-359+654delT), -1kb 88498511 (c.4238_4241delACAG), 88498555 (c.4194_4197delACAT), 88498596 (c.*4156delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	88502789 (p.Glu105Glu),
non-synonymous substitutions
B6 transcript (ENSMUST00000149068)	METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELK
MSMv4 transcript	METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELK
homology	100.00 (117 / 117)

Reports

substitution

cSNPs

1

Insertion

8

Deletion

13

SNPs

+1kb: 88510099(c.-6996G>C), 88510292(c.-7189T>C), 88510744(c.-7641C>T), 88511500(c.-8397T>C), 88511573(c.-8470A>G), 88512019(c.-8916T>C), 88512156(c.-9053G>A), 88512360(c.-9257A>C), 88512566(c.-9463A>G), 88512593(c.-9490A>G), 88512961(c.-9858G>T), 88513033(c.-9930C>T), 88513104(c.-10001A>G), 88513349(c.-10246G>A), 88513503(c.-10400T>C), 88514057(c.-10954C>T), 88514408(c.-11305C>T), 88514491(c.-11388C>G),
5'UTR
CDS: 88502789(c.315G>A),
3'UTR
INTRON: 88503609(c.-283-223T>C), 88504004(c.-284+165G>A), 88504557(c.-358-314A>G), 88504870(c.-358-627G>A), 88504935(c.-358-692A>G), 88505056(c.-358-813C>T), 88505069(c.-358-826C>T), 88505138(c.-358-895C>T), 88505185(c.-358-942T>A), 88505188(c.-358-945T>C), 88505208(c.-358-965G>A), 88505223(c.-358-980T>C), 88505313(c.-358-1070G>A), 88505418(c.-358-1175G>A), 88505444(c.-358-1201A>G), 88505638(c.-358-1395T>C), 88505785(c.-358-1542T>C), 88506003(c.-358-1760G>A), 88506164(c.-358-1921C>G), 88506191(c.-358-1948G>C), 88506204(c.-358-1961G>A), 88506615(c.-358-2372A>G), 88506824(c.-358-2581A>G), 88507257(c.-359+2624A>G), 88507294(c.-359+2587G>A), 88507580(c.-359+2301A>G), 88507733(c.-359+2148C>T), 88507789(c.-359+2092C>T), 88507828(c.-359+2053A>G), 88508375(c.-359+1506C>T), 88508528(c.-359+1353C>T), 88508538(c.-359+1343G>T), 88508540(c.-359+1341T>G), 88508552(c.-359+1329G>A), 88508641(c.-359+1240G>A), 88508760(c.-359+1121A>G), 88508898(c.-359+983G>A), 88509241(c.-359+640T>G), 88509537(c.-359+344A>T), 88509538(c.-359+343G>A), 88509546(c.-359+335A>G), 88509788(c.-359+93A>G),
-1kb: 88497776(c.*4977C>T), 88497848(c.*4905G>A), 88498876(c.*3877T>A), 88498933(c.*3820A>G), 88498935(c.*3818T>A), 88498951(c.*3802C>T), 88498991(c.*3762C>A), 88499756(c.*2997G>A), 88499979(c.*2774T>C), 88500048(c.*2705T>C), 88500075(c.*2678A>T), 88500126(c.*2627T>C), 88500151(c.*2602A>G), 88500344(c.*2409G>A), 88500637(c.*2116T>C), 88500719(c.*2034C>T), 88500740(c.*2013G>C), 88500872(c.*1881G>A), 88500925(c.*1828A>G), 88500952(c.*1801A>G), 88501005(c.*1748G>A), 88501235(c.*1518T>C), 88501408(c.*1345G>A), 88501435(c.*1318T>C), 88501625(c.*1128T>A), 88501647(c.*1106T>G), 88501648(c.*1105C>T), 88501793(c.*960C>T), 88501874(c.*879C>T), 88502191(c.*562A>G), 88502282(c.*471A>G), 88502493(c.*260T>C), 88502540(c.*213T>C), 88502573(c.*180A>T), 88502628(c.*125A>T),

Insertions

+1kb
5'UTR
CDS
3'UTR
INTRON: 88504119 (c.-284+49dupA),
-1kb: 88497974 (c.*4778_*4779insT), 88498648 (c.*4104_*4105insAT), 88498652 (c.*4100_*4101insATT), 88498707 (c.*4045dupA), 88498714 (c.*4038_*4039insAA), 88499075 (c.*3677_*3678insCT), 88499803 (c.*2949_*2950insCTC),

Deletions

+1kb: 88510788 (c.-7686delG), 88511216 (c.-8115_-8114delCA), 88512751 (c.-9652_-9649delTTTT),
5'UTR
CDS
3'UTR
INTRON: 88504659 (c.-358-419_-358-417delAAA), 88504665 (c.-358-428_-358-423delAACAAA), 88504706 (c.-358-466_-358-464delACC), 88505008 (c.-358-771_-358-766delGTGGCA), 88505248 (c.-358-1008_-358-1006delACT), 88506920 (c.-358-2681_-358-2678delACAC), 88509226 (c.-359+654delT),
-1kb: 88498511 (c.*4238_*4241delACAG), 88498555 (c.*4194_*4197delACAT), 88498596 (c.*4156delA),

coding sequence substitutions

premature termination by the nucleotide substitution

0

synonymous num

1

non-synonymous num

0

synonymous substitutions

88502789 (p.Glu105Glu),

non-synonymous substitutions

B6 transcript
(ENSMUST00000149068)

METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELK

MSMv4 transcript

METPSQRRATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLR
LRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELK

homology

100.00 (117 / 117)

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ATCAAAACCACAAAACAGGATCTCACACATGTAATCCAAGATGATTTCAT CTGGACATGGGGCTGTGTACAGCCTTCAACTTCAGTTTTTCCTTACTCCCTCAGCCTCCG AACTGCTGGAATGTGCCACCATGCCAGGCTTTGGTTGTCTGTCTGTCTGGTTTTTTTGTT TGTTTGTTTTTTGAGATAGACTCACTGTTTAACTAGTCCAGGTTGGCCTCGACCTGGGGA GCGCTGGATTAGAGGGTGTGCTCCACGTTGTATTTATTTAATTCTACTTTTCAGTTTTGT CTGTATAGCCCTGGCTGTCCTGGAACTGTAGACCAGGCTGGCCTTGAGCTCAGAAATCCA TCAGACTCTGCCTCCAAAGTGCTGTGATTAACGGCATGTGCCACCATGCCACGGCTTCGG GCTGGATTTCTAAGTAAAAAGGACCTCTCTTACTATAAAACTGTGTGCTTTAGCTAATTA ATCAGCCATCCCAAGATTAGTGATAAACGTTCCTTTTTAGAGGAAACCCCTCAGTCCTGA GCAGAACAGAACAATGGTCCACCCTCGTTCCAGGCCTCACAAACATTTCGGTCACCTAGA CAAGGATTCCCTGTCCCCGCCCCCACTCGACTTCCTGGAAATGTTGGGGGTTGCGGTGAA CCGACCCTTTTCTCCTGCTGGCATCCTGCAGTTGTGGCGCTTCTGTTTGTTGCCTTGGCA ACAGGGAAAGGAAACCCCCATTTAGGAGGCCGGGGAGGCCCCAGCAACCACACACACAGA TACACACAGGCTCACATGCGGCCGCCCACACGCAATAGCGTGCGTCACTCGCCTTCTGTA CTGAAGCCGCAGGCTGTAGAGGGAGCGCCCCGTCGGGGAGCAGCCGGGATGCCCGCCCCG ATCCAGTCCCTGGAGGAAGGACAACCACGTGCCCCGCCCCCGTCCTGCCCTTTCCGTTCA GATGCCCACCCCTCCTCCACCACCATCACCTGCCCTCCCCTCTCTCCCCG
1	EXON 1	88,509,881	88,509,956	-	-	76	CAAGCTGGTGGAGAGGAAAGCTGGAGCTGAGGAAGGCCTTTAGCCCCGAGCCTGATCTTT ATTTTGATCTAGTCTG
	INTRON 1 - 2	88,504,244	88,509,880			5,637	GTGTGTATTGTAGAGTGGTGAGTGC..........CCTCTGACCCCGTTCCTCTTTTCAG
2	EXON 2	88,504,169	88,504,243	-	-	75	GCCCTTCTCGAAGCCACAAAAATCTGGAACCTGGTGTCCTGGCCATGTGCTGAATGCACG CACAGCACAGCTCTG
	INTRON 2 - 3	88,503,387	88,504,168			782	GTATCTGTTTTAAATTATCCATTAA..........CCTGCCCCCGCCCCTTTGGGTACAG
3	EXON 3	88,502,753	88,503,386	-	-	634	GATGGCTCCTTTAAGAGCAGTGGATCCACCCCCTGTAGAGGAGGGCCTATTAGAGCCTCT GCCTGGCTGTCAGTGACTCAGTGTTCGCGGGAACGCTGCCTCAGCCTCAACACCAGCCAA CCCAGATCCCGAGGTGCGCCAGCGCCCAGCCCAGATCTCCACGCCTGCCAGGAGCGAGCT TCGCCGGCTCGCTGTCCCCCTGAGCAGCCTCTGTCCTTCTGTCCAAGTCCCGCGCCCTTC TCGGGACCCCTGCCCAGCGGGCAGCACTGTCACCCTGCCGGCCATGGAGACCCCGTCACA GCGGCGCGCCACCCGCAGTGGGGCGCAGGCCAGCTCTACCCCACTGTCGCCCACTCGGAT CACCCGGCTGCAGGAGAAGGAGGACCTGCAGGAGCTCAATGACCGCCTGGCCGTGTACAT CGATCGCGTGCGTTCCCTGGAGACCGAGAACGCGGGGCTGCGCCTTCGCATCACTGAGTC TGAAGAGGTGGTCAGCCGAGAGGTGTCCGGCATCAAGGCGGCCTACGAGGCCGAGCTGGG GGATGCCCGCAAGACCCTTGATTCTGTGGCCAAGGAGCGCGCCCGCCTCCAGCTAGAACT GAGCAAAGTGCGTGAGGAGTTCAAGGAGCTGAAG
	3' upstream sequence						GCTCGGTGAGTGAGGCCCGGCCGGCCGGCACCAGGGAGGCAGCAGTCGCCTGTAACTGGC CATCTAGTCCCCTCCCTCCCCGGAACTGCCTCCCGCGGGTGACTGGCAGTGCCAAGGGTA ATAGTCATGATAGGACATAGAAGGGAGGGGGTCTCTGTGAGAGGGTGGGGGATATAAAGT GTGGTGGGGGCATTGAGACCAAGTAGCGTTGGCGACAGGGCCTATGCTGTCAAGGTGGGA TTTTTCAGTCATTTGGAGCCTGGGGGATGGGCTTGAGGAAGGTAGAACAGGCTCTACCAG GTCTTGGAACTCCCGAACGCCGCCCGGGACACATCAGAATGGGTGAAAGGGTTTTATTAG AACTTTCTTGGTAGGTTTGGCACTTTGCCAATCTTGCCCAACGTGGCTCTGAACACATGA TGTCCACTAAGACATAGCGCCCACACTGACATTTGTCCAGTGGTACTGTAGTGGAGTTAC CAAGGCTGCATAGCCCCTTTCTCCCATGGCTGTGTAAGCACGGCCTTCTCCTGGTTCTTT CTAGGAGCTGAGAATGTCTGGGGCTTTTCCTAGACTCTCAGGCCCACCAGAAGCACACCA GGAGATCTGCTCCCCCGCAGCTCCCACAGCCCTTGGCCTCCCTGGTCGAGGAATGCAAGG GAGGGTGGGGAGGGAGACCGGGCACAGAAGCTAATGGCTCTGGAAATTCTGTTATGCCTG AGTCGGGGACACCCCAGTCTGGGCCCTCTCTGTTTGGTGACTTAAGGGTTTTGGAAGCTC TGTCCTTTCCTTGCTCAGCCAGCGAGCCACTTTCATTTTTCTAGTCAAGCCAGACTTTAC TCTGGCCCATCCTCTGAACTGTTGATGTCTTGATCTTATTAAACCTCTGGAATACAATGA CATTTTTGAAATCCAGCCGTTAGGGAGCCTCAGGCCACTCCCATTGCACCCATCCCTACT CCACCCTACCCCACCCTACTTGGCTCCACCTACTTTCTAA..........

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 117 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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Target CDS Information

Detail Map

Report

Polymorphisms Report

Exon Detail Report

Sequence Detail Report