MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cspp1 (ENSMUSG00000056763)

Cross Reference

GO	GO:0000922, GO:0005654, GO:0005813, ...show all
goslim_goa	GO:0005575, GO:0005622, GO:0005623, ...show all
MGI_trans_name	Cspp1-007
OTTP	OTTMUSP00000034272
OTTT	OTTMUST00000067948
UniParc	UPI000164C592
Uniprot/SPTREMBL	F6QJJ3
Vega_transcript	Cspp1-007, OTTMUST00000067948
Vega_translation	178701, OTTMUSP00000034272

Definition

codon_start:3
protein_id:ENSMUSP00000119258
translation:

XNHQEQQPRIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVS
LPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDL
PLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIEL

Chromosome

Length
Position(start - end)

9,650
10,056,924 - 10,066,575

Orient to Chromosome

plus

Link

Location : (1:10056924-10066575)
/

Detail Map

name	Cspp1 (ENSMUSG00000056763)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cspp1 note : centrosome and spindle pole associated protein 1 [Source:MGI Symbol;Acc:MGI:2681832]

name	1700047N06Rik (ENSMUSG00000102356)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : 1700047N06Rik note : RIKEN cDNA 1700047N06 gene [Source:MGI Symbol;Acc:MGI:1923853]

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000071087

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000117415

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000118263

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000122156

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119714

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000155974

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000186294

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000149214

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS35511.1 Uniprot/SWISSPROT:B2RX88 RefSeq_peptide:NP_080769 RefSeq_mRNA:NM_026493.3 RefSeq_mRNA_predicted:XM_006495483 RefSeq_mRNA_predicted:XM_006495484 RefSeq_peptide_predicted:XP_006495542.2 RefSeq_peptide_predicted:XP_006495545.1 RefSeq_peptide_predicted:XP_006495546.1 RefSeq_peptide_predicted:XP_006495547.1 RefSeq_peptide_predicted:XP_006495549.1 Vega_transcript:Cspp1-004 Vega_transcript:OTTMUST00000067846 UCSC:uc007ahi.1 GO:GO:0000922 GO:GO:0000922 GO:GO:0005515 GO:GO:0005515 GO:GO:0005654 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005813 GO:GO:0005819 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0032467 GO:GO:0051781 GO:GO:0051781 MGI_trans_name:Cspp1-004 Vega_translation:178694 Vega_translation:OTTMUSP00000034200 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034200 OTTT:OTTMUST00000067846 UniParc:UPI0000F0887C
definition	note : transcript_id=ENSMUST00000071087 protein_id : ENSMUSP00000068804 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRPHGSRRGYVDGDDVPEEPNTQISAAENKSVHCNGPPRSADLDITSPFAGMLFGGEDRELTKRRKEKYRQELLEQIAEQQKKKRREKDLAFGITTSGVQDPEKSPDRLKQFSLTPRHFEEMPPERPRVAFQTPPPPFSAPSSPSVPPVHSAPSHNEDLHSGLGSTLGELAHPRVLPVPLNPPPPPLLAPPASNYRTPYDDAYYFYGARNTLDPNIVYYGSGMIGGQPAPHVSAPVTHQVAPPAVNTVGQNEQKVLSDGLRNSGLVFEDKPKPSTQSLQSYQEALQEQIREREARRKKERLEKEEYEAKLEAEMRIYNPWGKGGGGAPLRDAKGNLITDLNRMHRQNIDAYHNPDARTYEDKRAVVSIDQNLATSNAENLEDSANKNSGPLQTQSSPFARGNTFGEPLSELQIKQQELYKNFLRFQIEEKRQREEAEREKLRVAEEKEEKRLAEQRARIQQEYEEEQERRREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGDETKHLRQPSPVVPALQNKIASKLQRPPSVDTIISSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRKQLRSEERRLQGRLLHLDSDDEIPMRKRERNPMDIFDMARHRVQAPVRRPSPKGLDATTFQNIHDFNELRERDSDTRVDLRLMYPDPPRDHHTLEIQQQALLREQQKRLNRIKMRRDAGADLDTICTDNAQGRRMPRDDTNDFLKNSLLESDSAFIGAYGETYPVIEDNAFPPPSQLPSARERRRNKLKGLDFDSSRLHTPQDGLSLKSISSVNVDQVRMRNEDRMRRLTEQQKKPTNTDDEGSLVDPDDIMRHLSDDGRNSAATEPWLRPGTSESLKRFMAEHLNEEQHKGPGKPGTFTWQGLSAAHA

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-001 Vega_transcript:OTTMUST00000067775 UCSC:uc007ahh.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-001 Vega_translation:178695 Vega_translation:OTTMUSP00000034157 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034157 OTTT:OTTMUST00000067775 UniParc:UPI00000E77D0
definition	note : transcript_id=ENSMUST00000117415 protein_id : ENSMUSP00000112800 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-003 Vega_transcript:OTTMUST00000067777 UCSC:uc007ahk.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-003 Vega_translation:178696 Vega_translation:OTTMUSP00000034158 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034158 OTTT:OTTMUST00000067777 UniParc:UPI00000E77D0
definition	note : transcript_id=ENSMUST00000118263 protein_id : ENSMUSP00000112476 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-006 Vega_transcript:OTTMUST00000067947 UCSC:uc007ahj.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-006 Vega_translation:178697 Vega_translation:OTTMUSP00000034271 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034271 OTTT:OTTMUST00000067947 UniParc:UPI00000E933F
definition	note : transcript_id=ENSMUST00000122156 protein_id : ENSMUSP00000113663 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-005 Vega_transcript:OTTMUST00000067946 UCSC:uc007ahl.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-005 Vega_translation:178698 Vega_translation:OTTMUSP00000034270 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034270 OTTT:OTTMUST00000067946 UniParc:UPI00000E77D0
definition	note : transcript_id=ENSMUST00000119714 protein_id : ENSMUSP00000114091 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cspp1-008 Vega_transcript:OTTMUST00000067949 Uniprot/SPTREMBL:D3Z378 UCSC:uc007ahg.1 EMBL:AC102570 EMBL:AC159972 GO:GO:0000922 GO:GO:0005654 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-008 Vega_translation:178699 Vega_translation:OTTMUSP00000034273 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000034273 OTTT:OTTMUST00000067949 UniParc:UPI000021674A
definition	note : transcript_id=ENSMUST00000155974 protein_id : ENSMUSP00000117726 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQ

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 RefSeq_peptide_predicted:XP_006495544.2 RefSeq_peptide_predicted:XP_011236667.1 Vega_transcript:Cspp1-017 Vega_transcript:OTTMUST00000118990 UCSC:uc011wih.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-017 Vega_translation:178700 Vega_translation:OTTMUSP00000066332 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066332 OTTT:OTTMUST00000118990 UniParc:UPI0001E88EB2
definition	note : transcript_id=ENSMUST00000186294 protein_id : ENSMUSP00000139775 translation : MDLNCYPHLVAGHAHSYLIWRGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRPHGSRRGYVDGDDVPEEPNTQISAAENKSVHCNGPPRSADLDITSPFAGMLFGGEDRELTKRRKEKYRQELLEQIAEQQKKKRREKDLAFGITTSGVQDPEKSPDRLKQFSLTPRHFEEMPPERPRVAFQTPPPPFSAPSSPSVPPVHSAPSHNEDLHSGLGSTLGELAHPRVLPVPLNPPPPPLLAPPASNYRTPYDDAYYFYGARNTLDPNIVYYGSGMIGGQPAPHVSAPVTHQVAPPAVNTVGQNEQKVLSDGLRNSGLVFEDKPKPSTQSLQSYQEALQEQIREREARRKKERLEKEEYEAKLEAEMRIYNPWGKGGGGAPLRDAKGNLISPLQTQSSPFARGNTFGEPLSELQIKQQELYKNFLRFQIEEKRQREEAEREKLRVAEEKEEKRLAEQRARIQQEYEEEQERRREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGDETKHLRQPSPVVPALQNKIASKLQRPPSVDTIISSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRKQLRSEERRLQGRLLHLDSDDEIPMRKRERNPMDIFDMARHRVQAPVRRPSPKGLDATTFQNIHDFNELRERDSDTRVDLRLMYPDPPRDHHTLEIQQQALLREQQKRLNRIKMRRDAGADLDTICTDNAQGRRMPRDDTNDFLKNSLLESDSAFIGAYGETYPVIEDNAFPPPSQLPSARERRRNKLKGLDFDSSRLHTPQDGLSLKSISSVNVDQVRMRNEDRMRRLTEQQKKPTNTDDEGSLVDPDDIMRHLSDDGRNSAATEPWLRPGTSESLKRFMAEHLNEEQHKGPGKPGTFTWQGLSAAHA

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cspp1-007 Vega_transcript:OTTMUST00000067948 Uniprot/SPTREMBL:F6QJJ3 GO:GO:0000922 GO:GO:0005654 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-007 Vega_translation:178701 Vega_translation:OTTMUSP00000034272 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000034272 OTTT:OTTMUST00000067948 UniParc:UPI000164C592
definition	codon_start : 3 note : transcript_id=ENSMUST00000149214 protein_id : ENSMUSP00000119258 translation : XNHQEQQPRIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIEL

name
type	misc_feature
link
xref
definition	note : contig AC102570.8 1..194371(-1)

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000067776 Vega_transcript:OTTMUST00000067776 MGI_trans_name:Cspp1-002 OTTT:OTTMUST00000067776
definition	note : retained_intron note : transcript_id=ENSMUST00000143606

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118987 Vega_transcript:OTTMUST00000118987 MGI_trans_name:Cspp1-020 OTTT:OTTMUST00000118987
definition	note : retained_intron note : transcript_id=ENSMUST00000191360

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118988 Vega_transcript:OTTMUST00000118988 MGI_trans_name:Cspp1-021 OTTT:OTTMUST00000118988
definition	note : retained_intron note : transcript_id=ENSMUST00000191521

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118989 Vega_transcript:OTTMUST00000118989 MGI_trans_name:Cspp1-022 OTTT:OTTMUST00000118989
definition	note : retained_intron note : transcript_id=ENSMUST00000190063

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000067950 Vega_transcript:OTTMUST00000067950 MGI_trans_name:Cspp1-009 OTTT:OTTMUST00000067950
definition	note : retained_intron note : transcript_id=ENSMUST00000134716

name	1700047N06Rik (ENSMUSG00000102356)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118998 Vega_transcript:OTTMUST00000118998 Clone_based_vega_transcript:RP23-228G18.5-001 MGI_trans_name:1700047N06Rik-001 OTTT:OTTMUST00000118998
definition	note : TEC note : transcript_id=ENSMUST00000194474

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000149214

Reports
substitution
cSNPs	1
Insertion	13
Deletion	18
SNPs	-1kb 10052104(c.-4822A>C), 10052961(c.-3965C>T), 10053068(c.-3858G>C), 10053093(c.-3833C>A), 10053116(c.-3810C>T), 10053162(c.-3764G>A), 10053165(c.-3761G>A), 10054291(c.-2635C>T), 10054406(c.-2520A>T), 10054412(c.-2514A>G), 10054463(c.-2463T>C), 10054547(c.-2379A>C), 10054562(c.-2364T>G), 10054683(c.-2243C>T), 10054707(c.-2219G>T), 10054747(c.-2179C>T), 10054824(c.-2102T>C), 10054869(c.-2057T>A), 10054896(c.-2030C>A), 10054997(c.-1929G>A), 10055011(c.-1915A>C), 10055133(c.-1793G>C), 10055346(c.-1580G>A), 10055429(c.-1497C>T), 10055484(c.-1442T>G), 10055545(c.-1381A>G), 10055682(c.-1244C>T), 10055711(c.-1215C>T), 10055762(c.-1164T>C), 10055800(c.-1126C>G), 10055934(c.-992T>G), 10055940(c.-986A>G), 10055964(c.-962T>C), 10055968(c.-958A>G), 10055969(c.-957C>T), 10056043(c.-883C>A), 10056091(c.-835G>A), 10056095(c.-831G>C), 10056097(c.-829T>C), 10056122(c.-804T>C), 10056126(c.-800C>G), 10056183(c.-743C>A), 10056205(c.-721C>T), 10056231(c.-695A>G), 10056350(c.-576C>A), 10056443(c.-483A>G), 10056618(c.-308A>G), 10056676(c.-250A>G), 10056724(c.-202G>A), 10056750(c.-176A>G), 10056790(c.-136A>C), 5'UTR CDS 10056947(c.22C>T), 3'UTR INTRON 10056984(c.22+37T>C), 10057053(c.22+106A>T), 10057106(c.22+159T>C), 10057112(c.22+165G>T), 10057141(c.22+194G>A), 10057455(c.22+508T>A), 10057485(c.22+538C>G), 10057602(c.22+655T>C), 10057855(c.23-865A>G), 10057900(c.23-820A>G), 10058071(c.23-649G>T), 10058229(c.23-491C>T), 10058327(c.23-393C>T), 10058407(c.23-313T>G), 10058554(c.23-166T>G), 10058640(c.23-80C>A), 10059025(c.126+202C>G), 10059030(c.126+207T>C), 10059053(c.126+230A>C), 10059069(c.126+246A>G), 10059079(c.126+256A>C), 10059091(c.126+268T>G), 10059098(c.126+275A>C), 10059147(c.126+324A>C), 10059153(c.126+330A>G), 10059168(c.126+345G>C), 10059199(c.126+376A>C), 10059202(c.126+379A>C), 10059987(c.126+1164C>T), 10060157(c.126+1334T>G), 10060514(c.126+1691A>G), 10060556(c.126+1733C>G), 10060806(c.126+1983C>T), 10060901(c.126+2078A>C), 10061043(c.126+2220A>G), 10061171(c.126+2348A>G), 10061563(c.126+2740C>T), 10061575(c.126+2752T>A), 10061583(c.127-2750T>G), 10061882(c.127-2451A>G), 10061942(c.127-2391A>G), 10061966(c.127-2367A>T), 10061974(c.127-2359C>G), 10062019(c.127-2314C>A), 10062061(c.127-2272A>G), 10062119(c.127-2214A>G), 10062178(c.127-2155A>G), 10062210(c.127-2123C>G), 10062238(c.127-2095G>A), 10062263(c.127-2070T>A), 10062270(c.127-2063T>C), 10062460(c.127-1873T>G), 10062860(c.127-1473T>C), 10063024(c.127-1309C>T), 10063522(c.127-811T>C), 10063846(c.127-487A>C), 10064256(c.127-77G>A), 10064297(c.127-36A>G), 10064538(c.207+125T>C), 10065013(c.208-310G>A), 10065075(c.208-248A>C), 10065833(c.306+412A>T), 10066217(c.307-209C>T), +1kb 10066691(c.116G>A), 10066713(c.138A>G), 10066956(c.381T>C), 10067305(c.730C>A), 10067323(c.748G>C), 10067388(c.813T>G), 10068630(c.2055A>G), 10068655(c.2080T>C), 10069186(c.2611T>C), 10069281(c.2706T>A), 10071028(c.4453C>A), 10071179(c.4604C>T), 10071318(c.4743T>C), 10071402(c.4827G>T), 10071404(c.4829G>A), 10071413(c.4838G>T), 10071450(c.4875A>G), 10071536(c.4961T>C),
Insertions	-1kb 10053134 (c.-3792_-3791insT), 10053901 (c.-3025_-3024insAC), 10054252 (c.-2674_-2673insAT), 10055586 (c.-1340_-1339insT), 5'UTR CDS 3'UTR INTRON 10057304 (c.22+360_22+361insATTTTAT), 10057637 (c.22+688_22+690dupCTT), 10058408 (c.23-312_23-311insT), 10062076 (c.127-2257_127-2256insC), 10062151 (c.127-2182_127-2181insC), 10062326 (c.127-2007_127-2006insG), 10064272 (c.127-58dupA), +1kb 10067103 (c.528_529insA), 10068806 (c.2231_2232insG),
Deletions	-1kb 10054992 (c.-1933_-1932delAT), 10055868 (c.-1057_-1055delCCT), 5'UTR CDS 3'UTR INTRON 10057289 (c.22+343_22+344delAT), 10057649 (c.22+703_22+706delAGAG), 10057784 (c.22+840delA), 10060464 (c.126+1649delA), 10061556 (c.126+2735delT), 10061778 (c.127-2554delA), 10061854 (c.127-2478delC), 10064981 (c.208-341_208-340delCT), 10065094 (c.208-228_208-227delTG), 10065171 (c.208-151delC), 10066291 (c.307-130_307-129delTT), +1kb 10067780 (c.1206_1209delTTTA), 10069372 (c.2798_2799delTG), 10070681 (c.4107_4109delACA), 10071069 (c.4495delT), 10071342 (c.4768_*4771delCTGT),
coding sequence substitutions
premature termination by the nucleotide substitution	1
synonymous num	0
non-synonymous num	1
synonymous substitutions
non-synonymous substitutions	10056947 (p.Arg8*),
B6 transcript (ENSMUST00000149214)	NHQEQQPRIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSL PIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLP LQIQTAYTHSEGPWLSRQEEGLYRQLDGEIEL
MSMv4 transcript	NHQEQQP*IEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSL PIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLP LQIQTAYTHSEGPWLSRQEEGLYRQLDGEIEL
homology	99.34 (152 / 152)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000149214


..........CCGGTGAGAGGTGGGCGGATCCTAGTCTGTCAAGTCTTTCCCTGGTTCCT
CACTTTTTCTAGCACTCAGACATCACTTTTAAACATTGATGCTTCTATCTACAAACTAAC
TTTACCTTCATTGTTTGAGATTACAGGTGTGTACTAAAGGCATCTTTATTCCAGCCAAAG
GCACTAAAGGTGTGTGCGAAGGCTAAGTCACAGTACGACTAGAAACAGGCATTTTCAGTA
AATAACACAATCCCGGGGTTCACAGTGTGATCAGATATCCTGCAACAATGCTTGGCTGAT
TTCAACATGGCTGACTGGTTTTAACAAACAAATTTCAAAATAATTTTATGGAAAATTGGG
GAAGATTATCCAAAAGATAAAGTACATGTTTTATCATTTAAAAAGAATACAAGAAAAGAG
GTGGCAGAATAATTTCATATTGCTCTAAAATTTAGGTAATGGCAAAATGGAGGGAGTGTA
AAGATTCAGATTAGCAAGGAGAGGTTATTGATGCTGGCAGCATGTATGTGTTTCTTGTGG
CATACGTATTCTTTGGTTTACTCACTGCAGATGAGTGCTGACTCGTGATCTCTCATTGAG
TTCAGTGAGTCTTTCCAGTCCGCTGCAGCTGAGACTTGGACAGTGTAGTGCTCACATCTT
CATAAGCCACCTGCCAATGCAGAGGCTTGTAATGACTTCCTGTAGCCATCTCGTTTGTTG
CTTGTTACATAGCACTTTCTCACGGGCGTGTGCTATGAAAGGGAGTCAGTGCTTCCTAGG
AATTTGTGTCCTGTAGTGTTTGTTGTGAGTACTTTCTTAGGAGGCAAATTCAAAGAGTGA
TTGTGTGCTTTAGGCTTACATATATCTTATCCCACACTTTTTACAGAAGTCTAATACTTT
TTGACTGTTGGCCCTGAAACATAATGTCAACTGTCAGTGTCACTGATGCTTATTTGAAAT
GACATCACTTTAAGTGACCTTAAGATGACACTAGTATTTTTCTTGCTCCT
AGAATCATCAGGAACAGCAACCAT
GTAAGTCTCACTGTGTCTTAGCTCA..........CGACTTAAGCTGTTTTCTTTTTTAG
GAATTGAATATGGCTTAAGTTTACCGCTTGGAGAAGATTATGAACAGAAGAAACATAAATTAAAAGAAGAATTGAGGCAAGATTATAGACGATATCTTACTCAG
GTAAGTTGTTCTGTTAGTGAGTTGT..........TATATTTTAATGTGCATATATACAG
AAAAATTTCCTATCTACTGGTGAAACAGACCCATCTACTCTGGGAGTTTCTCTTCCCATTGATGAGCGGTTATCTGCCAAG
GTAGGTGGATAGGAATAAGAGTTTC..........ATTGTTTTTCAATTTTTTTGTAAAG
GAAAGATTGAAACTTGAACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAATCCACAGAAAAAGTCAGACAGGTAGAAAAGAATATTGAG
GTATGTTTTACTTTTATAAAGTGAT..........CTTTTTTTCTTTTTTAATTCAACAG
CCTAAGAGTCAAAGAAATAAAAACCCTATTAGTCAAGGTAAATCTGATCTACCTTTACAAATACAGACTGCATACACACATTCAGAGGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTGTACCGACAGCTAGATGGTGAAATTGAATTA
AGGAGCAGAAGACCGCTTAAACAAACAAAGGAAGAAGTAGGCATTTCTGGTGCAGAACAT
CCAAGCCTTTCTGGCAGCGCTGGTGTCCCAGAGAGAAGAGCCCGCAGGGCTAACGAGGAG
CGGGTGCTTGACAGACAGCATTGCAGAGCCGACCGAGACCCTGGTGTGAGTGAAGACATG
GACGAGAGGTTTAGATTTGAAAGTGATTTTGATAGAAGACTTTTGAGAGTGTATACAAAT
GGCAGGTATTTACATCTTCACTTTTCTTCTCTGTATTTACTTAATACTGGTGTTTTATAG
TTACATTAGGGAAAAGGAGCTTTATTTGATTTACCGTATTTAATTTAGTTATACTGTTTT
GTGAAACACCATTTTATGTGCCATTGAAGGGGGGAGATAAAGAAAACACTCTAAATGGGG
ACCTTGGTAAAGCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAAC
ATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAACCAAGTAGGAGAGTAAAAAAAAAAAA
AAACCCAAAAAACCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTC
AGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGAAATCTCAGGTTGTTTTGG
ATCATAGCTTCCCAGATGACTGACAGGGATAAAACCCAGTTCCCTACGCAGTAAGTTAAA
ACTAGGTTGATAGGCATCCTAATCTTACATGTTAAAATGTATGTAAAAAGGGCCATTGTA
ACATAGATGAAATGCAGTTTGTGCCTTTACTGGTTGTACATATTAAGTATCTTTATGTTT
TTTAAATGGACTTTTATGTAATTGAAATGACATTAACTTTTCATAGTCATATTTTCCAGT
GTTTTTTTACTTCCTTTAACTATTTTGTGATGCTGTTTGGAACTTCTTAACTATAAGTCG
TTGTTTTTATTTACCATATTACATAACTTGATATATGTTT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CCGGTGAGAGGTGGGCGGATCCTAGTCTGTCAAGTCTTTCCCTGGTTCCT CACTTTTTCTAGCACTCAGACATCACTTTTAAACATTGATGCTTCTATCTACAAACTAAC TTTACCTTCATTGTTTGAGATTACAGGTGTGTACTAAAGGCATCTTTATTCCAGCCAAAG GCACTAAAGGTGTGTGCGAAGGCTAAGTCACAGTACGACTAGAAACAGGCATTTTCAGTA AATAACACAATCCCGGGGTTCACAGTGTGATCAGATATCCTGCAACAATGCTTGGCTGAT TTCAACATGGCTGACTGGTTTTAACAAACAAATTTCAAAATAATTTTATGGAAAATTGGG GAAGATTATCCAAAAGATAAAGTACATGTTTTATCATTTAAAAAGAATACAAGAAAAGAG GTGGCAGAATAATTTCATATTGCTCTAAAATTTAGGTAATGGCAAAATGGAGGGAGTGTA AAGATTCAGATTAGCAAGGAGAGGTTATTGATGCTGGCAGCATGTATGTGTTTCTTGTGG CATACGTATTCTTTGGTTTACTCACTGCAGATGAGTGCTGACTCGTGATCTCTCATTGAG TTCAGTGAGTCTTTCCAGTCCGCTGCAGCTGAGACTTGGACAGTGTAGTGCTCACATCTT CATAAGCCACCTGCCAATGCAGAGGCTTGTAATGACTTCCTGTAGCCATCTCGTTTGTTG CTTGTTACATAGCACTTTCTCACGGGCGTGTGCTATGAAAGGGAGTCAGTGCTTCCTAGG AATTTGTGTCCTGTAGTGTTTGTTGTGAGTACTTTCTTAGGAGGCAAATTCAAAGAGTGA TTGTGTGCTTTAGGCTTACATATATCTTATCCCACACTTTTTACAGAAGTCTAATACTTT TTGACTGTTGGCCCTGAAACATAATGTCAACTGTCAGTGTCACTGATGCTTATTTGAAAT GACATCACTTTAAGTGACCTTAAGATGACACTAGTATTTTTCTTGCTCCT
1	EXON 1	10,056,924	10,056,947	-	1	24	AGAATCATCAGGAACAGCAACCAT
	INTRON 1 - 2	10,056,948	10,058,719			1,772	GTAAGTCTCACTGTGTCTTAGCTCA..........CGACTTAAGCTGTTTTCTTTTTTAG
2	EXON 2	10,058,720	10,058,823	1	0	104	GAATTGAATATGGCTTAAGTTTACCGCTTGGAGAAGATTATGAACAGAAGAAACATAAAT TAAAAGAAGAATTGAGGCAAGATTATAGACGATATCTTACTCAG
	INTRON 2 - 3	10,058,824	10,064,332			5,509	GTAAGTTGTTCTGTTAGTGAGTTGT..........TATATTTTAATGTGCATATATACAG
3	EXON 3	10,064,333	10,064,413	0	0	81	AAAAATTTCCTATCTACTGGTGAAACAGACCCATCTACTCTGGGAGTTTCTCTTCCCATT GATGAGCGGTTATCTGCCAAG
	INTRON 3 - 4	10,064,414	10,065,322			909	GTAGGTGGATAGGAATAAGAGTTTC..........ATTGTTTTTCAATTTTTTTGTAAAG
4	EXON 4	10,065,323	10,065,421	0	0	99	GAAAGATTGAAACTTGAACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAA TCCACAGAAAAAGTCAGACAGGTAGAAAAGAATATTGAG
	INTRON 4 - 5	10,065,422	10,066,425			1,004	GTATGTTTTACTTTTATAAAGTGAT..........CTTTTTTTCTTTTTTAATTCAACAG
5	EXON 5	10,066,426	10,066,575	0	-	150	CCTAAGAGTCAAAGAAATAAAAACCCTATTAGTCAAGGTAAATCTGATCTACCTTTACAA ATACAGACTGCATACACACATTCAGAGGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTG TACCGACAGCTAGATGGTGAAATTGAATTA
	3' upstream sequence						AGGAGCAGAAGACCGCTTAAACAAACAAAGGAAGAAGTAGGCATTTCTGGTGCAGAACAT CCAAGCCTTTCTGGCAGCGCTGGTGTCCCAGAGAGAAGAGCCCGCAGGGCTAACGAGGAG CGGGTGCTTGACAGACAGCATTGCAGAGCCGACCGAGACCCTGGTGTGAGTGAAGACATG GACGAGAGGTTTAGATTTGAAAGTGATTTTGATAGAAGACTTTTGAGAGTGTATACAAAT GGCAGGTATTTACATCTTCACTTTTCTTCTCTGTATTTACTTAATACTGGTGTTTTATAG TTACATTAGGGAAAAGGAGCTTTATTTGATTTACCGTATTTAATTTAGTTATACTGTTTT GTGAAACACCATTTTATGTGCCATTGAAGGGGGGAGATAAAGAAAACACTCTAAATGGGG ACCTTGGTAAAGCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAAC ATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAACCAAGTAGGAGAGTAAAAAAAAAAAA AAACCCAAAAAACCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTC AGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGAAATCTCAGGTTGTTTTGG ATCATAGCTTCCCAGATGACTGACAGGGATAAAACCCAGTTCCCTACGCAGTAAGTTAAA ACTAGGTTGATAGGCATCCTAATCTTACATGTTAAAATGTATGTAAAAAGGGCCATTGTA ACATAGATGAAATGCAGTTTGTGCCTTTACTGGTTGTACATATTAAGTATCTTTATGTTT TTTAAATGGACTTTTATGTAATTGAAATGACATTAACTTTTCATAGTCATATTTTCCAGT GTTTTTTTACTTCCTTTAACTATTTTGTGATGCTGTTTGGAACTTCTTAACTATAAGTCG TTGTTTTTATTTACCATATTACATAACTTGATATATGTTT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000149214

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 152 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information