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Target CDS Information

Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Cross Reference
EMBL AC140415, AC154505, AC164878, ...show all
Fantom C130040I10
GO GO:0003779, GO:0004864, GO:0005634, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Phactr1-008
OTTP OTTMUSP00000032434
OTTT OTTMUST00000065155
PDB 4B1U, 4B1V, 4B1W, ...show all
protein_id AAH48407.1, AAH61691.1, AAY42814.1, ...show all
UCSC uc007qfo.2
UniParc UPI00006844ED
Uniprot/SWISSPROT Q2M3X8
Vega_transcript OTTMUST00000065155, Phactr1-008
Vega_translation 214393, OTTMUSP00000032434
Definition protein_id:ENSMUSP00000115207
translation:
MDYPKMDYFLDVESAHRLLDVESAQRFFYSQGAQARRATLLLPPTLMAASSEDDIDRRPI
RRVRSKSDTPYLAEARISFNLGAAEEVERLAAMRSDSLVPGTHTPPIRRRSKFANLGRIF
KPWKWRKKKSEKFKHTSAALERKISMRQSREELIKRGVLKEIYDKDGELSISNEDDSLEN
GQSLSSSQLSLPALSEMEPVPMPRDPCSYEVLQASDIMDGPDPGAPVKLPCLPVKLSPPL
PPKKVLICMPVGGPELTLASYAAQKSSQQAVAQHHHTVLPSQMQHQLQYGSHGQHLPSST
GTLPMHPSGCRMIDELNKTLAMTMQRLESSEQRVPCSTSYHSSGLHSSDGITKAGPMGLP
EIRQVPTVVIECDDNKENVPHEPDYEDSPCLYGREEEEEEEDEDDDASLYTSSLAMKVCR
KDSLAIKLSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNI
LKPRNEQEEQEEKREIKRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADK
PWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP

Chromosome 13
Length
Position(start - end)
452,490
42,682,698 - 43,135,189
Orient to Chromosome plus
Link Location : (13:42682698-43135189)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Transcript ID ENSMUST00000149235
Reports
substitution
cSNPs2
Insertion313
Deletion415
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 42956756 (p.Ser130Ser), 43096669 (p.Val418Val),
non-synonymous substitutions
B6 transcript
(ENSMUST00000149235)
MDYPKMDYFLDVESAHRLLDVESAQRFFYSQGAQARRATLLLPPTLMAASSEDDIDRRPI
RRVRSKSDTPYLAEARISFNLGAAEEVERLAAMRSDSLVPGTHTPPIRRRSKFANLGRIF
KPWKWRKKKSEKFKHTSAALERKISMRQSREELIKRGVLKEIYDKDGELSISNEDDSLEN
GQSLSSSQLSLPALSEMEPVPMPRDPCSYEVLQASDIMDGPDPGAPVKLPCLPVKLSPPL
PPKKVLICMPVGGPELTLASYAAQKSSQQAVAQHHHTVLPSQMQHQLQYGSHGQHLPSST
GTLPMHPSGCRMIDELNKTLAMTMQRLESSEQRVPCSTSYHSSGLHSSDGITKAGPMGLP
EIRQVPTVVIECDDNKENVPHEPDYEDSPCLYGREEEEEEEDEDDDASLYTSSLAMKVCR
KDSLAIKLSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNI
LKPRNEQEEQEEKREIKRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADK
PWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP*
MSMv4 transcript
MDYPKMDYFLDVESAHRLLDVESAQRFFYSQGAQARRATLLLPPTLMAASSEDDIDRRPI
RRVRSKSDTPYLAEARISFNLGAAEEVERLAAMRSDSLVPGTHTPPIRRRSKFANLGRIF
KPWKWRKKKSEKFKHTSAALERKISMRQSREELIKRGVLKEIYDKDGELSISNEDDSLEN
GQSLSSSQLSLPALSEMEPVPMPRDPCSYEVLQASDIMDGPDPGAPVKLPCLPVKLSPPL
PPKKVLICMPVGGPELTLASYAAQKSSQQAVAQHHHTVLPSQMQHQLQYGSHGQHLPSST
GTLPMHPSGCRMIDELNKTLAMTMQRLESSEQRVPCSTSYHSSGLHSSDGITKAGPMGLP
EIRQVPTVVIECDDNKENVPHEPDYEDSPCLYGREEEEEEEDEDDDASLYTSSLAMKVCR
KDSLAIKLSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNI
LKPRNEQEEQEEKREIKRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADK
PWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP*
homology100.00 (581 / 581)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Transcript ID ENSMUST00000149235
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GAAATGGCAGGGCACCAAACCCTATCCTACCAGGAGCAGCCTTCAGGATT
AGCAAGTACTCCACACCTTGGAGAGCCTAGGAGACAGGAGAATCATTTTAAATGCAAATT
AAATTGAGGGGGTAGCAGAAAAGAACACATAAAAGACGGTAAAACAAAACCTTTCAATTT
TCTTAAATTAGCAGGCTAATGCGTTCTAAAGAGCGGCCCCACTTAGATCCCGGCTTTGGG
GGGAGGGGGCATTTCATCACAATATGAAACCCGACAGATCCATCATTCCCCTCCACCCAG
TGCTCTTGACTGGAGATTGAAGGGAAAATTAGAAGCTGTTCATTTGGGCTCACAGGCTCA
GCAGCCCTGCTCAGCTTGCCCGCCGCTCACTGACAGCGTCCTGTTGAAGGGGGCACAAGT
GCTGGTGAGTATCCCCTAACTTTGAGAATTCTTCCCTTCGTGCGTCTTTCTGGCTGTGTT
GCCTTGGGTGGGCTAGGTAGGGGTTGTCTCCCAGAGGGTCTGCATTATAATGCGGCTTTC
AAAATATGGGAAATTTCAGACAGCTTTTAAGCTGTTTCTAGGGACAGAAGGAAAGAGTTA
TTTTCAGCCTAGGTGCCGGTGATTGTTTTTGTGTATTAATTATAATGGGAATGTTCACTG
AACATACTATATTGCCAGTTAAATAGCCTTTCTTCATCACCCTACCCCATTCAGCAGAAA
GATAGAGACAGGTGCTCCAACATGGTCTAAACACTACAGACCTCCCCACTGTTTAATCAT
TTACCATGTATTTTGTTCTTACTGCAAAGCAGACTGGGATTTGAGATCGCAAAAATAGAT
TATTAAAGCAGAAATTCTGATTTTTAAATAACCGGTGAGATCTCCGCTTTAAGAGGTGGG
AGAGTAGACTGTGAATGGCCCTGGATGATGCAAAATCTTCATGTAGATTTTGATGGTTCC
CTGCCAAAGTTTTACATGGGAAAGTGGTAATTTCCTTCCTTCGCAGAGGA
1 EXON 1 42,681,513 42,681,741 - - 229
GGGCGTGGAGAGGCTGGAACTGGCGTCACCTTCGGTTGCTAAGGTAACCTGTTCTGGCCA
TTTTATCTGATAGAGAAAGTCCAGTGGACAGAATACATTATTCATCACTGATCTAATCAG
ATAATCAAAACTGTTTACTTTCGCTGGGAATATTTAATAAGATCGAAGGCAGCTGGTTGA
AACTGCTCATTTGTTCTATCGACGGCCCTTGGTTTTACATGTTTTTACA
INTRON 1 - 2 42,681,742 42,682,649 908
GTAAGTATTCTTTGCTGTTGGGGTA..........TCTTTCTCCCCTTCCCCCTTTATAG
2 EXON 2 42,682,650 42,682,800 - 1 151
AGAGCTAAGTGATTGCCTTCTCTCAAAATCCTGTTCTGAACATTGAAGATGGATTATCCC
AAAATGGATTATTTTCTGGACGTTGAGTCTGCTCACAGACTCTTGGATGTGGAGTCGGCG
CAGAGGTTCTTCTACAGTCAAGGAGCTCAAG
INTRON 2 - 3 42,682,801 42,709,703 26,903
GTAACAAAGGGAGAAGAGGGGGGGC..........TCTCTCCATCTCCTTCTCCTCTCAG
3 EXON 3 42,709,704 42,709,850 1 1 147
CTCGCCGGGCGACCCTGCTCCTGCCTCCCACATTAATGGCGGCTTCTTCGGAGGATGACA
TAGACCGGCGGCCCATCAGAAGAGTCCGCTCCAAGAGCGACACGCCATATCTCGCAGAGG
CCAGGATCTCCTTTAACCTGGGGGCAG
INTRON 3 - 4 42,709,851 42,956,616 246,766
GTAAGGACACCCCTCGCCTTCCTCT..........CCATCACTTTCTTGGGAAAAACAAG
4 EXON 4 42,956,617 42,956,781 1 1 165
CCGAGGAAGTGGAGAGGCTGGCAGCCATGCGTTCCGACTCGCTGGTCCCAGGTACGCACA
CCCCGCCCATCCGGAGGAGGAGTAAGTTTGCCAACCTGGGGAGGATTTTCAAACCCTGGA
AATGGAGGAAGAAGAAAAGCGAAAAGTTCAAGCACACGTCAGCAG
INTRON 4 - 5 42,956,782 43,037,449 80,668
GTAAGGTGGCTGCTGGCCTTGTTTC..........CTCTCTCTCTGGCTCTTGCTTGCAG
5 EXON 5 43,037,450 43,037,530 1 1 81
CTCTGGAAAGGAAGATTTCGATGAGGCAGAGCAGAGAGGAGCTGATCAAGAGAGGGGTCT
TGAAGGAGATCTACGATAAAG
INTRON 5 - 6 43,037,531 43,057,178 19,648
GTAAGGGGCTGTCTGCTGGCCACAG..........TACTACCATCTCTTCCTTCCCACAG
6 EXON 6 43,057,179 43,057,346 1 1 168
ATGGAGAACTCTCTATATCAAATGAAGATGACTCCCTGGAGAACGGACAGTCCCTGAGCT
CCAGCCAACTCTCTTTGCCTGCTCTGTCGGAAATGGAGCCTGTCCCAATGCCCAGGGACC
CATGCTCATATGAGGTGCTCCAAGCTTCAGACATTATGGATGGACCAG
INTRON 6 - 7 43,057,347 43,077,654 20,308
GTAATGACATGGCACAGGCCTGGGG..........CTTCTCAACCCTCCTTCTGCCGCAG
7 EXON 7 43,077,655 43,077,976 1 2 322
ATCCTGGCGCCCCTGTGAAATTGCCTTGTCTGCCAGTGAAACTGTCGCCTCCGCTACCTC
CAAAGAAAGTCCTGATCTGTATGCCTGTAGGGGGGCCAGAGCTCACTCTGGCATCCTATG
CAGCCCAGAAGAGCAGCCAGCAGGCCGTGGCCCAGCACCACCACACCGTCCTACCATCCC
AGATGCAGCACCAGCTGCAGTATGGCAGTCACGGCCAGCATCTCCCATCCTCCACCGGCA
CCTTGCCCATGCACCCCTCAGGCTGCAGGATGATCGACGAGCTGAACAAGACACTCGCCA
TGACGATGCAGAGGCTGGAAAG
INTRON 7 - 8 43,077,977 43,094,748 16,772
GTAACGGGGGGGGCGGGGGCTTGCT..........TCCCCTTTCTTTTCTTTTCATGCAG
8 EXON 8 43,094,749 43,094,996 2 1 248
CTCCGAGCAACGAGTCCCCTGTTCCACGTCTTACCACAGTTCTGGTTTGCACTCAAGCGA
CGGCATCACAAAAGCAGGACCCATGGGCCTTCCGGAAATAAGACAAGTGCCAACTGTTGT
GATTGAATGTGATGACAATAAGGAAAATGTGCCTCATGAACCCGACTATGAAGACTCGCC
CTGCCTGTATGGCCGGGAGGAGGAGGAAGAGGAGGAAGATGAAGATGATGACGCCTCTTT
GTACACCA
INTRON 8 - 9 43,094,997 43,096,649 1,653
GTACGTGCAGGCAGGCTGTCCGTGA..........ACTGACTGATTTCTCCCTCCTCCAG
9 EXON 9 43,096,650 43,096,806 1 2 157
GCTCACTGGCCATGAAGGTCTGCAGGAAGGACTCCTTAGCCATCAAACTCAGCAACAGGC
CCTCTAAGCGAGAGCTAGAAGAAAAGAACATCCTCCCCAGACAGACGGATGAGGAACGGC
TGGAGCTCAGACAGCAGATTGGCACCAAGCTCACCAG
INTRON 9 - 10 43,096,807 43,122,998 26,192
GTAAGAAAGCAGCAGCCCCGCCCGT..........AACTTTTCTTGGATTTTTTCCGTAG
10 EXON 10 43,122,999 43,123,054 2 1 56
GCGGCTGAGCCAGAGACCAACTGCAGAGGAACTGGAACAGAGGAACATTTTGAAGC
INTRON 10 - 11 43,123,055 43,128,137 5,083
GTAAGTCGGTGAAGCCCAGGGTGAC..........AGAGGTATCTTCCATTTATTTTCAG
11 EXON 11 43,128,138 43,128,199 1 0 62
CTCGGAATGAACAAGAAGAACAGGAGGAGAAGCGGGAAATCAAGAGGAGGCTGACTCGCA
AG
INTRON 11 - 12 43,128,200 43,132,919 4,720
GTAAGGCGGTCCCCCTTCCCCGGAG..........GCCCCACTTTTTCCCCTCCCTGCAG
12 EXON 12 43,132,920 43,133,060 0 0 141
CTCAGCCAAAGGCCCACAGTGGAAGAACTCCGGGAGAGGAAGATCCTTATCCGCTTCAGT
GACTACGTGGAAGTGGCAGATGCCCAAGACTATGACCGAAGGGCAGACAAGCCATGGACC
CGCCTCACCGCTGCAGACAAA
INTRON 12 - 13 43,133,061 43,133,926 866
GTAAGCAGAGGCCAGGAGAAAGGGA..........TGACCAGCTGCTATTATTCTTCCAG
13 EXON 13 43,133,927 43,134,003 0 2 77
GCTGCCATTCGGAAGGAACTCAATGAGTTTAAAAGTACCGAGATGGAAGTCCACGAGTTA
AGTAGACACTTAACCAG
INTRON 13 - 14 43,134,004 43,135,173 1,170
GTTAGTTCTGACGATGTCTGGCTCC..........CTTGACAACATTTCTTGTTCCCCAG
14 EXON 14 43,135,174 43,135,245 2 - 72
GTTTCATCGACCTTAACAGTGGGATTACTCTTGAGTGCTCTGCTGTCTTCAAAACATAAA
TTTCTAAGAACC
3' upstream sequence
ATAAGTGCTGGCGTCTGTCCACTTCCCCGTTACCATGTAAATCCGAACTGCCTTTTTTTA
AAAAAGAGCGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGGAAGGAAAAAGGAAGAAGAAAGGAAAGGAAACACAGCCAGGATTCTGTGT
GCAGGAACACCATGGTGAGCACTCCTCAGCATTGCTGGCACCATTTCTGCTACAGAAAGG
TGACCCGGCCCCCCGAGACAGGGACCTACCTGAGGATTGTCCAGAAACCACCTTGTCCCC
TCCATCCAGACCCAGCAAGCACCACATTGGTTCAGTCTTCGGTGAATCCCTTCCTCACAA
GGGACTGTTGCCTGAGTCCAAAGAAGCCCAGGGCTTGACATGGGAATGGCTAGGGTGACA
GTCATAATCCAACTGCCCTTCTAGACGTGGTCAGACACATGGGCTCCAGATGGGGCATCT
GCTTTGGGGGCCCTTGGGAAGGGGGTGACGACCTCTCAGTCTCCTCCACACATACACAGG
CACACCCACGCACGAACATGTGCACACACAAACACACATGCTTTCTTTTCAGATTTGTCC
TGGAGGAGCCTGTGTTGGCACTTCAGTCATACCCATGTGTGCTGTGGGCATAGGAGGCTA
AACCTGAGCGTCCACTTTGACCCCCATCCCAAACTGAACTGCCTTCCAGAAGACTCTGGT
AAGGATAGTAGACATCTGCTCAGTTCACATTCATTGACCAGTTTGTGTTCACAAAGCCCA
GGGCTATGGGTGATCTAATGCTTTAATGCCCTTGCCAAGGTTCCCTGTGATATTCATGAG
TGTGAACTGACCAGGGAGCCATCAACCCCATGGGCCACAGTTTTCTTTGACCCTGTAGCA
CACCTGGGCCAGTGGTGATGTGGCTTGGTAGTTGATAGCTTCTGAGTACCAGTGTATGGA
GGCCAGTGCAGGGGACCAATGTCCCACTGTCATTCCAGAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Transcript ID ENSMUST00000149235
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 581 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information