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Target CDS Information

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Cross Reference
EMBL AC115952, AC116695, AC162448, ...show all
GO GO:0003725, GO:0016020, GO:0044822
goslim_goa GO:0003674, GO:0003723, GO:0005575
MGI_trans_name Stau2-014
OTTP OTTMUSP00000047065
OTTT OTTMUST00000086842
RefSeq_peptide_predicted XP_011236690.1
UCSC uc007ajn.2
UniParc UPI00004761C8
Uniprot/SPTREMBL D3Z6D2
Vega_transcript OTTMUST00000086842, Stau2-014
Vega_translation 178762, OTTMUSP00000047065
Definition protein_id:ENSMUSP00000118489
translation:
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKP
FPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQ
NEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFV
TRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGP
DYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKI
AKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVY
QEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAI
GLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

Chromosome 1
Length
Position(start - end)
140,434
16,345,698 - 16,486,133
Orient to Chromosome minus
Link Location : (1:16345698-16486133)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000149320
Reports
substitution
cSNPs2
Insertion86
Deletion98
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 16440376 (p.Lys119Lys), 16463087 (p.Thr74Thr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000149320)
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKP
FPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQ
NEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFV
TRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGP
DYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKI
AKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVY
QEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAI
GLKGSSPTSPCSSVQPSKQLEYLARIQGFQV*
MSMv4 transcript
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKP
FPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQ
NEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFV
TRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGP
DYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKI
AKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVY
QEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAI
GLKGSSPTSPCSSVQPSKQLEYLARIQGFQV*
homology100.00 (512 / 512)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000149320
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AACCAAGGATCTAGGACAGTGTTTTAAGACGATCCTCATTTTTGGCTCTA
AAGATTTTTTTTTTTTTGGTACGGGCACACAACTTTAATATATTTATTATTCATTTTTTC
CTGATGAATGATGTGGGCCGTAGAGCAGGTGATGGGGGCTCGCTTGCGCTGCTTGCTACC
CTCCTCCCCCTTCTTCCTCCTCCAGTCTAGAAAGGTGCAGGATCCGCCGAATCCTACGTC
GCACCGCAGTGGAACGGACGCGGGATGGTCGCGCGTCCCCAGCTAGGCAGAGGCGGGCAG
TCAGCGAGCCGGGAAAGGTAGGAGCAGAGCGTCGGGGACAGGCTGCTAGAGAGCCCAGGG
GCAGCGGGTGCGGGAGAGGCTGAGCCGCCGGTGCTGGAGCACCTTCGCAGTTGCGGGCCG
GGCGCCCTCAGCGTGCTCCTGCAGCAGCTCCCGGGACGGGCCCCGGCGCGGCCCGAGACC
CCAGGCCTAAGCCCCGCAGCGCCCCGGGATGCGGGGGTCCCAGAAGCCGCCAGGGGGCGG
GAACGGCGCGGCGAACAATGGCCGCTCGACCGCGAAGGGAGGCGGGGAGAGGTGGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGA
GACACAGAGACACAGAGACACAGAGACACAGAGAGAGAGACAGAGACACAGAGAGAGAGA
CAGACAGACAGAGAGACACAGAGAGAGGAGAGAGAGAGACAGAGAAAGAGAGGGGGGAGA
GACACAGAGAGAGAGAGACAGACAGAGAGAGGAGAGAGACAGAGAAAGAAAGGGGAGAGA
GACAGAGAGACAGAGCGAGCTGGAGAGAGAGAGCGCGAGAGAGAGCTGGCGCGGGGGCGC
GCGGCGTGGCGCGGGCGCGGCGGCGCAGGCGGGGGCGCGCGGCGCGGGCC
1 EXON 1 16,519,173 16,519,307 - - 135
CGGGAGGGCGCGGCGGGAGCGCAGGGCGGCAGGCGGAGGCGGGGGGCGGGAGCCGAGGAG
GGAGCAGGCGGCGTCGGCGGAGCTCTGGAGCGCTCGCCCATGTGGAGCCGTCTGCCGGGC
GTCCGTGGCCCGCAG
INTRON 1 - 2 16,509,409 16,519,172 9,764
GTAAATCCTGGTGCGAGCGGCGCCG..........TTATTTCTTTGTTTTCATTTTCCAG
2 EXON 2 16,509,342 16,509,408 - - 67
TTTTGTGGAGCTGTGAGGGATACGGAAGTTTGATCAATATTGTCTTAACATGCTTCAGAT
AAATCAG
INTRON 2 - 3 16,487,970 16,509,341 21,372
GTGAGTATGATTAAGGCGTGTCTTA..........TATTTATTATTTTTTATTGTGTCAG
3 EXON 3 16,487,615 16,487,969 - - 355
GGTCTTCCTGTGTTGCTCAGGCTGGTTCTGAAGTCCTCAGCTTAAGAGATGCTTCTGCCT
CAGTCTTCCAAGTAGCCAGGACTAGAGGTGCATGCATGTGCACCCTAGAAGCAGGATAGA
ACTCAGATTTTCATTTTCTAGAGCAACAGAGGGTTAATGAGCCTTATGGTCTAGGAAAGA
ATTTCTTAAGACATCAAAAGCATAAACCTTAATAGAAAAACATTGATAGCAATAATATAC
AAAATATCCATACAACCCAGCAGAGATCCTTCACAGTGAGCCATAACATAAAGTGGTTAA
CTTTACTAGTAACTTAGGCATGCAGAAAATCCAAACACGAGTGCGATATCATTAG
INTRON 3 - 4 16,486,151 16,487,614 1,464
GTAAGCATCAAATTGTGAGTGAAAT..........AACTTTACAGCCTTTTTATTTGCAG
4 EXON 4 16,486,020 16,486,150 - 0 131
CTTCTCTCCACGATAAAATGGCAAACCCCAAAGAGAAAACTCCAGTGTGTCTGGTAAATG
AGTTAGCCCGTTTCCATAGCATCCAACCCCAGTATAAGCTTCTGAATGAAAGCGGGCCTG
CTCATTCGAAG
INTRON 4 - 5 16,463,195 16,486,019 22,825
GTAAGGTTACAAAGAGAGGCGGTGA..........GTTTTCTCTATCTGGTCTTTCCAAG
5 EXON 5 16,463,035 16,463,194 0 1 160
ATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGAGCAGTATA
AAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACCCTTCCCAAACCA
GTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAG
INTRON 5 - 6 16,440,459 16,463,034 22,576
GTATGGCATTGGTTTGTTTCCTTCC..........GTGTATCTCTAATGTTTTTAAACAG
6 EXON 6 16,440,323 16,440,458 1 2 136
GTAGTATAACTCCAACTGTGGAACTGAATGGGCTCGCTATGAAAAGGGGAGAGCCTGCCA
TCTACAGGCCACTAGATCCAAAACCATTCCCAAATTATAGAGCTAACTACAACTTCCGGG
GCATGTACAATCAGAG
INTRON 6 - 7 16,394,211 16,440,322 46,112
GTTTGTATGTCTTCTTTGGTTTTGT..........TAATGCTTGTGCTCTCTTTCTATAG
7 EXON 7 16,394,051 16,394,210 2 0 160
GTATCATTGCCCAATGCCCAAGATCTTTTATGTTCAGTTAACTGTAGGAAATAATGAATT
CTTTGGTGAAGGGAAGACTCGACAAGCTGCCAGACACAATGCTGCGATGAAAGCGCTTCA
AGCCCTACAGAATGAGCCAATTCCAGAAAAGTCTCCCCAG
INTRON 7 - 8 16,392,625 16,394,050 1,426
GTGTGGCCCTGATGAGTGCGGCATT..........TTTTTTGCTTTTTGTTTTTACTTAG
8 EXON 8 16,392,517 16,392,624 0 0 108
AATGGTGAATCAGGAAAAGAAATGGATGACGATAAAGATGCAAATAAATCTGAAATAAGC
TTAGTGTTTGAGATTGCGCTGAAGAGAAATATGCCTGTCAGTTTTGAG
INTRON 8 - 9 16,390,034 16,392,516 2,483
GTATGTGTTCCTGTGCTTCTCTTTG..........TTAATATTTTGCTTGCATTTAATAG
9 EXON 9 16,389,821 16,390,033 0 0 213
GTTATTAAAGAAAGTGGACCACCACATATGAAGAGTTTTGTAACTCGGGTGTCAGTGGGA
GAATTTTCTGCAGAAGGAGAGGGAAATAGCAAAAAACTCTCCAAGAAGCGTGCCGCAACC
ACTGTCTTACAGGAGCTTAAAAAACTCCCACCTCTTCCTGTGGTAGAGAAGCCAAAACTA
TTTTTTAAAAAACGCCCTAAAACAATAGTAAAG
INTRON 9 - 10 16,374,812 16,389,820 15,009
GTAAGCATATACTTGTGACTATCCA..........TTCTGACGCTTTTCTTATGTTTTAG
10 EXON 10 16,374,674 16,374,811 0 0 138
GCTGGACCCGACTATGGTCAAGGAATGAACCCCATTAGCCGCCTGGCTCAGATCCAGCAA
GCCAGAAAGGAAAAGGAGCCTGATTACATCCTACTCTCAGAACGAGGAATGCCTCGCCGT
CGAGAGTTCGTAATGCAG
INTRON 10 - 11 16,369,887 16,374,673 4,787
GTATTCTTAATCTTCGTACTAAATG..........TCATGAATTTCTTTAACCTCAATAG
11 EXON 11 16,369,755 16,369,886 0 0 132
GTCAAGGTAGGCAATGAAGTTGCGACTGGAACAGGACCCAATAAAAAGATAGCCAAAAAA
AATGCTGCTGAAGCAATGCTGTTACAGCTTGGCTATAAAGCGTCCACCAGTCTTCAGGAT
CCGCTCGACAAG
INTRON 11 - 12 16,366,140 16,369,754 3,615
GTAAGTGTGGGCCTTAGTGGACATG..........TGTAATAATTGATTTAACCTTTCAG
12 EXON 12 16,366,079 16,366,139 0 1 61
ACAGGTGAAAACAAAGGATGGAGTGGTCCAAAGCCTGGGTTTCCTGAACCAACAAATAAC
A
INTRON 12 - 13 16,346,012 16,366,078 20,067
GTAAGTTACTATTTTGTGTGTGTGT..........CAGTGTACCTTTATTTTATTCATAG
13 EXON 13 16,345,594 16,346,011 1 - 418
CTCCAAAAGGAATTCTTCATCTTTCTCCTGATGTTTATCAAGAGATGGAAGCTAGCCGCC
ACAGAGTGACCTCTGGCACAACTCTAAGCTACTTATCTCCCAAAGATATGAACCAACCTT
CAAGCTCTTTCTTCAGTGTGTCTCCCTCATCAACTAGTTCAGCCACAGTTGCCAGGGAAC
TCCTTATGAATGGAACATCTCCTACTGCTGAAGCCATAGGTTTAAAAGGAAGTTCTCCTA
CTTCCCCTTGTTCTTCAGTACAGCCTTCAAAACAACTGGAATATTTAGCAAGGATTCAAG
GCTTTCAGGTATGATTTTAAAGAAAAAAACAAAAAGAGAAAATAAAACTCATTAGCCCCA
AATCCTTCATTTCTGTCCACCAGAAGGCTCATTCTTGCCTGCTAATGTGGCCTCCATG
3' upstream sequence
CCATTAACATTGTAAGTTATTTAGAAACACAAAAGACAGAAAAAAAGAGATTCATAGCAC
ATGTCTTATTTTCTGTCACTACTGTCCAGGAACTCTGTTGCTGCCTGGCTTTCTGCCATA
TTGATATTCACATCTGTACTCTCTGTCTCTCTCTTTCTCCCTCCCTCTCCCTCTCTTTCT
TCCCCTCCCTCTTCCTTTCCAATCCTGTCTACCTTCCTTTCTTCCCCTCCCTTCTCCCTC
ATGTCTCCATCCTTGCCTTCCTCCTGGGTCCTGTCTTTCAGTTGGTCTTGATTGGCACAT
CCATCTTCTCATTTTGTTTTGCACAACCAAGATTCTCCCAGGAGACATTTGGTGTTAGTG
TTTACATCACTTCCCCTTTTTACAGTCACGGTTGAGTCTTTCTGCTGTTGATTTGATTTT
ATAGCAGTTTTGAATTTCCCATCCTGCAGTTAGTAATGACACAGGTACATTTATAAGGTC
CAGCACCCTTGAAGTCTGTTACCTTAGGGGGCATTAAACATGGCACTGAGCAGTAGTGGA
ACACTTTGTGGATGTTGGAGGTATAATGAGTATCTGTTGTACTGGATCGTGTGCTGGGCC
AGGGTGGAGAAGCATCTACCGCCACTGATACAGCAGCTGTCTCATGATGATCTCAGAGCA
GCACACAGCTGTCATGAGTGTAGATTTGGGAATGGAGCTTCTTTCCCACTTATTCTTGTT
CCCTTTGGGGGGAAATACCCCATGAAACCAACAGGAGAGATTTTAAAGGAATTGTTAATT
GTGGGAAGGGAAGTTTATGTGTGCCGACTCCTAGTTGCCTTGAAAGCCAAGTACTGAAGC
ATAACTGTCAACCGACGGGATGAAACTGCAGCTTGCGTGTGCACAGGACACTCTGGCTCC
CCACATTTCACTGCTTCACCTTCCATCTTAGTCTTCCTTCTTAAGACCAAACTCTGTAAT
TTCTTGTAGAAATGTTCTAGATCTGTATTATGTAGAAGAT..........

Sequence Detail Report

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000149320
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 512 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information