MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Tpm3 (ENSMUSG00000027940)

Cross Reference

EMBL	AC163616
GO	GO:0001725, GO:0002102, GO:0005515, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Tpm3-007
OTTP	OTTMUSP00000038134
OTTT	OTTMUST00000073608
UniParc	UPI00016116DB
Uniprot/SPTREMBL	D3YVR0
Vega_transcript	OTTMUST00000073608, Tpm3-007
Vega_translation	187789, OTTMUSP00000038134

Definition

protein_id:ENSMUSP00000114229
translation:

MKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELA
ESKCSELEEEL

Chromosome

3

Length
Position(start - end)

1,617
90,087,459 - 90,089,077

Orient to Chromosome

plus

Link

Location : (3:90087459-90089077)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000149432

Reports
substitution
cSNPs	0
Insertion	8
Deletion	8
SNPs	-1kb 90075657(c.-11802C>T), 90075866(c.-11593C>A), 90076048(c.-11411A>G), 90076143(c.-11316C>T), 90076310(c.-11149T>A), 90076448(c.-11011A>G), 90076465(c.-10994C>T), 90076691(c.-10768T>C), 90076761(c.-10698T>C), 90076848(c.-10611T>C), 90076893(c.-10566C>T), 90076987(c.-10472A>C), 90077022(c.-10437T>C), 90077222(c.-10237C>A), 90077240(c.-10219T>C), 90077307(c.-10152A>G), 90077405(c.-10054T>C), 90077420(c.-10039C>A), 90077441(c.-10018C>T), 90077591(c.-9868G>A), 90077632(c.-9827T>C), 90077650(c.-9809G>A), 90077856(c.-9603T>A), 90077999(c.-9460C>A), 90078203(c.-9256A>G), 90078207(c.-9252C>A), 90078267(c.-9192C>T), 90078392(c.-9067T>C), 90078518(c.-8941G>A), 90078785(c.-8674G>C), 90079005(c.-8454G>A), 90079009(c.-8450C>T), 90079202(c.-8257G>A), 90079420(c.-8039G>T), 90079487(c.-7972G>C), 90079540(c.-7919G>C), 90079542(c.-7917G>A), 90079548(c.-7911C>G), 5'UTR CDS 3'UTR INTRON 90080028(c.-139+32A>G), 90081728(c.-139+1732G>A), 90082107(c.-139+2111T>C), 90082194(c.-139+2198A>T), 90082242(c.-139+2246T>G), 90082266(c.-139+2270G>C), 90082942(c.-139+2946G>A), 90083604(c.-138-2842A>G), 90083715(c.-138-2731T>C), 90083925(c.-138-2521T>G), 90084001(c.-138-2445A>G), 90084081(c.-138-2365G>T), 90084579(c.-138-1867C>A), 90085366(c.-138-1080A>C), 90085574(c.-138-872C>A), 90085585(c.-138-861A>G), 90085794(c.-138-652A>G), 90085863(c.-138-583G>A), 90085888(c.-138-558C>T), 90085944(c.-138-502T>C), 90085956(c.-138-490C>T), 90086049(c.-138-397C>T), 90086059(c.-138-387C>T), 90086093(c.-138-353G>T), 90086223(c.-138-223G>A), 90086270(c.-138-176C>A), 90086417(c.-138-29A>G), 90086944(c.-5+365T>A), 90087211(c.-4-244G>A), 90087375(c.-4-80G>A), 90087587(c.114+15C>T), 90087822(c.185+78T>C), 90087987(c.185+243T>C), 90088058(c.185+314G>A), 90088202(c.185+458T>G), 90088223(c.185+479A>G), 90088300(c.185+556C>T), +1kb 90089362(c.285G>A), 90089895(c.818G>A), 90089897(c.820C>A), 90090122(c.1045C>T), 90090158(c.1081A>T), 90090313(c.1236G>A), 90090350(c.1273T>C), 90090416(c.1339C>T), 90090554(c.1477T>A), 90090579(c.1502A>G), 90090621(c.1544G>C), 90090680(c.1603C>T), 90090733(c.1656T>C), 90090841(c.1764T>C), 90090864(c.1787T>G), 90091186(c.2109T>C), 90091281(c.2204G>A), 90091334(c.2257C>T), 90091345(c.2268G>A), 90091470(c.2393G>A), 90091488(c.2411T>C), 90091494(c.2417T>C), 90091601(c.2524A>C), 90091887(c.2810A>G), 90092173(c.3096G>C), 90092203(c.3126A>T), 90092312(c.3235C>G), 90092355(c.3278A>T), 90092451(c.3374T>A), 90092487(c.3410C>T), 90092798(c.3721T>C), 90093012(c.3935G>A), 90093277(c.4200C>T), 90093308(c.4231C>T), 90093371(c.4294G>A), 90093826(c.4749T>G), 90093905(c.*4828C>T),
Insertions	-1kb 90075000 (c.-12459_-12458insCTC), 90075769 (c.-11690_-11689insA), 90076153 (c.-11306_-11305insTTT), 90077816 (c.-9643_-9642insGT), 5'UTR CDS 3'UTR INTRON 90082277 (c.-139+2283dupT), 90084062 (c.-138-2383_-138-2382insTTT), 90089016 (c.186-32_186-31insCCCCCT), +1kb 90092060 (c.2983_2984insG),
Deletions	-1kb 90077271 (c.-10187delG), 5'UTR CDS 3'UTR INTRON 90081404 (c.-139+1411_-139+1413delCCT), 90081550 (c.-139+1571_-139+1578delTGTCTGTC), 90082589 (c.-139+2609delA), 90085814 (c.-138-629_-138-627delGAG), 90088067 (c.185+343_185+350delTTTTTTTT), +1kb 90089320 (c.244delC), 90090436 (c.1360_*1365delAACAAC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000149432)	MKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELA ESKCSELEEEL
MSMv4 transcript	MKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELA ESKCSELEEEL
homology	100.00 (71 / 71)

Exon Detail Report

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000149432


..........GAGAGAACTGTCTCAACAGTTTTGGGGGTTGTTTTGAGACAGCGTTTTAT
GTAGCTCAGACTAGCCTTAAATTCACCCTGTAGCCAAAGATGACCTTGAATTTCTGCTCT
TTCTATCTTACCCACTAAGTACCGAATGGTACTTATGGATACGTGCCACTAGGCTAGTTT
AAGTGCTCCTGGAGATTCAGCCCAGGGCTTCGAATGTGCTTGGCTAGTGCTTTACAAACT
GAGCAATATCCACAGCTCCTCCTAATAGATTTTCAAAGGACCTCACTGGGACTCCTTGCA
AGGTGAAGGCTAGAGTCTTCTATCTAGGCTTGTCTCAGAACCTGGTTTTGGAATCTGTCC
TAGACTGAGTAGAAGTGGAAGCACATGGGATATTTTAAATTGCGGAGCGGGAGCAGACGC
AGTGGTAGGGAGGCACCGGATAAGAGAGGGGTCAACTGCGTAAGTGTTCACGACAGCACC
ATTTTAGTAAATGGGACAGCCATTGTTACGAGACAGCCTGGTGGGTGAGGCTAGACTATT
AAGCGCCTCTCAGTTACTATGGTAGCCTTACCAAACCCCGCCCCCTTTACTGGACTAAGG
AAAGACCGCCCTGAGTGGTCGCCTAGGGTTACTGGGAGGCTCCACCCTTCACTTTCTGCC
GACTGCCGGAGTGGACTGCGTTCCCGCCTGCTTGGCAGGGGGAGGACGCGCGGTGGCGGC
GGCGTCACATCCCGGCGTATGAGTGAGTTCCGGTATTTCAGGGCGGAGCAGGCGGAAGTA
GGGTGAAAAGCGGCTACAACGCCGAGCGGAGGAGGTAGGAACCTGATTTCCAGAAGCAGC
TTGTAGGCACCATGGCCGGGACCACCACCATCGAGGCGGTAAAGCGCAAGATCCAGGTTC
TGCAGCAGCAAGCTGATGATGCGGAGGAAAGGGCCGAGCGCCTCCAGCGGGAAGTGGAGG
GAGAAAGGCGGGCCCGGGAGCAGGTACGCACGGAGAGCCGAGGCGCAGCA
GGGAAGGGCTCGGCGTCCCTCTGCTGTGCTCAGCTCCATGGAGCCTTGGAAACCCGGACTAGTCATGGAGTCCTAAGGTTGGGTGGGACTCGATTACGATGGCCCG
GTAAGCGGATGCGGAGGAAACTTAA..........GTTTTCCATTTCCCATTGATTGAAG
GCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGTGCGCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCAGAGAAGGCTGCTGATGAGAGTGAGAG
GTGTGTGAATCCCAAAAGAATAGGC..........CATTCTTTCATTCTGTTTCCGGCAG
AGGTATGAAGGTGATTGAAAATCGGGCTCTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAGCTAAAGGAAGCAAAGCACATTGCAGAAGAGGCCGATAGGAAGTATGAAGAG
GTGAGTTGCCTCTGTAGTGCGTGCG..........GCCGTACTGGGGTCTTTTCTTCTAG
GTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGTGCTGAGCTGGCAGAGTC
GTGAGTATTTTGTCTCCAGATCTTG..........TCCTTTGGTATTAAAATGTTCACAG
TAAGTGTTCTGAGCTGGAGGAGGAGCTGAA
GAATGTCACCAACAACCTCAAGTCTCTTGAGGCTCAGGCGGAGAAGGTAGGGCTGGTTTG
TGAAGATGCACAGGCTTTGGGGCTTGGGCCCAGCCCTGCCCTTAATGAAACAAGACATAC
CCATTCTGTATAATAATAATGAAAGACATACCCATTCTGTATAATAAATCGAGGGAAAAG
CGAGCGTTCTCTTCCTTCCCACCTTTGTCTATCAGAGAGTAGGTTAATGCTAACTCCTCT
GTACCCCCCCCCCCCCATCTCGGGTTTAAATAACTCTGGTCTGCAGTGCTCCTGGAGTGT
GCTCCTTGAGTTGATACTGCCGTGCTCAAAATCAGTTATAAGGAGCATAAGATGGGGCAA
CAGAGCGCCAGCTCTCGAGACCTGTCTAGGAGCAGTCAGGGCAGATGATTGCCACTTACC
ATCATGAGGGATGCTTTAACTGTCGATTCCTGCTCGTTAACTTGGAGAAAGGAAAAGCAC
TTTGGGTTGACAGAAGTAGGATGAAAATTTAGGTCTGTTAACAAAAGAAAAAAAAAGGTC
CTGGTGAAGTTTACACTGCAAGTTTTGTTTGCAGATAGTTGGGTCTTAGGACTCTTGCTT
TTTTTAGTCCTGGACCAAATCAAATCCAGAAGAATGTCTATGACTTATGTGAGAATAATA
TGGCTGTTGTCTGTGAGATGGTCTCTACTCTGAAATTTGTATTCTACTTTTCTTTACAGT
ACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGG
AGGTGAGCTGAGGGGCTGAGCCGCATGAACGATAGGAAGAGTTAATATTGTAATATTAAT
CCTGAGCCTTGCTGGCCTTGGCTCAAATGGCTTAGAGGCACGAGAGGAGGAAGTAACCAT
CTTTCATTCTGTTTGTTGTTGTGCTTCCTCAGGCAGAGACCCGTGCTGAGTTTGCTGAAA
GATCGGTAGCCAAGCTGGAGAAGACCATTGATGACCTGGA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000149432

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 71 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information