MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Hk3 (ENSMUSG00000025877)

Cross Reference

EMBL	AC154610
GO	GO:0001678, GO:0004340, GO:0004396, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Hk3-006
OTTP	OTTMUSP00000043478
OTTT	OTTMUST00000081313
UniParc	UPI0001889D15
Uniprot/SPTREMBL	D6RCV7
Vega_transcript	Hk3-006, OTTMUST00000081313
Vega_translation	214552, OTTMUSP00000043478

Definition

protein_id:ENSMUSP00000121088
translation:

MATIGPSGLHPGERASVCPHEGVPRPSGSLELPPSVPGPYAARQC

Chromosome

13

Length
Position(start - end)

3,626
55,015,796 - 55,019,423

Orient to Chromosome

minus

Link

Location : (13:55015796-55019423)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Hk3 (ENSMUSG00000025877)
Transcript ID	ENSMUST00000149644

Reports
substitution
cSNPs	1
Insertion	10
Deletion	7
SNPs	+1kb 55021370(c.-1947G>T), 55021405(c.-1982C>A), 55021447(c.-2024G>A), 55021602(c.-2179A>C), 55021661(c.-2238G>A), 55021684(c.-2261G>A), 55021688(c.-2265G>A), 55021814(c.-2391C>T), 55022273(c.-2850T>G), 55022421(c.-2998T>C), 55022647(c.-3224C>T), 55022773(c.-3350A>C), 55022809(c.-3386C>T), 55022840(c.-3417T>A), 55023014(c.-3591A>G), 55023097(c.-3674A>T), 55023112(c.-3689T>C), 55023322(c.-3899T>G), 55023511(c.-4088G>T), 55023612(c.-4189C>T), 55023772(c.-4349G>C), 55023969(c.-4546C>T), 55023971(c.-4548A>G), 55024032(c.-4609T>A), 55024343(c.-4920A>T), 55024356(c.-4933C>A), 55024444(c.-5021G>T), 55024521(c.-5098C>T), 55025207(c.-5784C>T), 55025301(c.-5878C>T), 55025417(c.-5994A>G), 55025469(c.-6046T>A), 55025472(c.-6049T>C), 55025473(c.-6050G>T), 55025504(c.-6081A>G), 55026094(c.-6671G>A), 5'UTR CDS 55015813(c.121G>A), 3'UTR INTRON 55015175(c.46-46G>A), 55015207(c.46-78T>C), 55015362(c.46-233T>G), 55015365(c.46-236A>G), 55015414(c.46-285T>C), 55015633(c.45+118C>A), 55015881(c.97-44T>C), 55015949(c.97-112A>G), 55015959(c.97-122T>C), 55016017(c.97-180C>T), 55016183(c.97-346A>T), 55016257(c.97-420C>T), 55016443(c.97-606G>A), 55016470(c.97-633T>A), 55016510(c.97-673T>C), 55016760(c.97-923T>A), 55016898(c.97-1061T>G), 55016922(c.97-1085T>C), 55016965(c.97-1128A>G), 55016966(c.97-1129C>T), 55017049(c.97-1212T>C), 55017052(c.97-1215T>A), 55017078(c.97-1241G>T), 55017087(c.97-1250C>T), 55017172(c.97-1335G>C), 55017176(c.97-1339G>C), 55017191(c.97-1354T>C), 55017204(c.97-1367C>T), 55017323(c.97-1486A>G), 55017391(c.97-1554C>G), 55017574(c.97-1737T>C), 55017691(c.96+1637A>T), 55017755(c.96+1573A>G), 55017909(c.96+1419G>A), 55017931(c.96+1397T>C), 55018035(c.96+1293T>A), 55018043(c.96+1285A>T), 55018427(c.96+901C>A), 55018741(c.96+587C>T), 55018750(c.96+578A>G), 55018843(c.96+485A>G), 55018844(c.96+484C>T), 55019022(c.96+306C>T), 55019073(c.96+255G>A), 55019168(c.96+160A>C), 55019185(c.96+143C>T), 55019273(c.96+55A>G), 55019291(c.96+37T>G), 55019464(c.-24-17A>T), 55019490(c.-24-43A>T), 55019641(c.-24-194C>T), 55019738(c.-24-291G>A), 55019740(c.-24-293C>G), 55019741(c.-24-294A>G), 55019821(c.-24-374T>C), 55020053(c.-24-606T>C), 55020091(c.-24-644G>A), 55020109(c.-24-662G>C), 55020164(c.-24-717G>A), 55020239(c.-24-792C>G), 55020245(c.-24-798A>G), 55020291(c.-24-844A>G), 55020295(c.-24-848C>T), 55020350(c.-25+796C>T), 55020603(c.-25+543C>T), 55020609(c.-25+537C>G), 55020732(c.-25+414C>T), 55020816(c.-25+330A>G), 55020825(c.-25+321T>C), 55020916(c.-25+230T>C), 55020918(c.-25+228T>G), 55020923(c.-25+223C>T), 55020933(c.-25+213T>A), 55020958(c.-25+188T>C), 55020992(c.-25+154A>G), 55021102(c.-25+44C>T), 55021114(c.-25+32G>A), 55021130(c.-25+16A>G), -1kb 55010092(c.5704G>A), 55010123(c.5673A>G), 55010230(c.5566G>A), 55010241(c.5555C>T), 55010350(c.5446C>A), 55010351(c.5445G>A), 55010473(c.5323C>T), 55010484(c.5312C>A), 55010830(c.4966G>A), 55010873(c.4923T>C), 55010880(c.4916A>G), 55010883(c.4913T>C), 55010888(c.4908C>T), 55010892(c.4904C>T), 55010968(c.4828G>C), 55011056(c.4740A>C), 55011149(c.4647C>T), 55011158(c.4638C>T), 55011259(c.4537A>C), 55011413(c.4383A>G), 55011414(c.4382C>T), 55011558(c.4238C>T), 55011615(c.4181A>G), 55011623(c.4173C>T), 55011767(c.4029A>G), 55011871(c.3925C>T), 55011916(c.3880T>G), 55012023(c.3773G>T), 55012174(c.3622A>G), 55012641(c.3155A>G), 55012658(c.3138T>G), 55012872(c.2924T>C), 55012915(c.2881G>A), 55012916(c.2880A>G), 55013154(c.2642C>T), 55013218(c.2578T>C), 55013305(c.2491C>T), 55013398(c.2398C>T), 55013479(c.2317T>A), 55013639(c.2157G>T), 55013651(c.2145G>A), 55013668(c.2128G>A), 55013861(c.1935A>G), 55013911(c.1885G>A), 55014110(c.1686G>A), 55014149(c.1647G>A), 55014177(c.1619A>C), 55014286(c.1510C>T), 55014289(c.1507C>T), 55014382(c.1414C>T), 55014421(c.1375G>C), 55014526(c.1270A>C),
Insertions	+1kb 55021607 (c.-2185_-2184insATAG), 55023461 (c.-4039_-4038insTA), 5'UTR CDS 3'UTR INTRON 55015406 (c.46-278_46-277insA), 55015465 (c.45+285dupA), 55015473 (c.45+277_45+278insA), 55017052 (c.97-1216_97-1215insA), 55018487 (c.96+840_96+841insGTT), 55018710 (c.96+617_96+618insCC), -1kb 55010375 (c.5418_5420dupCTT), 55014200 (c.1592_*1595dupAGGG),
Deletions	+1kb 55023499 (c.-4077delG), 55024069 (c.-4650_-4647delCTCC), 55024853 (c.-5436_-5431delCATCCA), 55025558 (c.-6136delA), 5'UTR CDS 3'UTR INTRON 55018247 (c.96+1078_96+1080delCAA), 55018901 (c.96+425_96+426delGG), 55019734 (c.-24-289_-24-288delGT), -1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	1
synonymous substitutions
non-synonymous substitutions	55015813 (p.Ala41Thr),
B6 transcript (ENSMUST00000149644)	MATIGPSGLHPGERASVCPHEGVPRPSGSLELPPSVPGPYAARQC*
MSMv4 transcript	MATIGPSGLHPGERASVCPHEGVPRPSGSLELPPSVPGPYTARQC*
homology	97.83 (46 / 46)

Exon Detail Report

Gene Symbol (Gene ID)	Hk3 (ENSMUSG00000025877)
Transcript ID	ENSMUST00000149644

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CAGGATAGCACTTTCCTCTCAAATGACAAGTGTGGTATCCAGACTGGCCG CCTTTGGATGACAGAAGAGCTTGTCAGACTACCTTGCAGGATAAGAGCTGAGAGTGAGGG GGTGGAAGCACACCTGGATCAATACTGCTAACTTATGTGTATCTCTTGACTCTGCCCCAC TCCTTCACTGTTTGAGCATAAAGCTCTTCTAAGTACCCTGCAGAGAGTCCTGGAGGTCAC TGGACCCCTTTATCTGTCCCTCTTCCAAACACACACTGCTTTTCATTATTATTCATTTCT TTAGTTGATATATTGGGGGTAGCTGAACACACACACACACACACACACACACACACACAC ACACACACACATGCTTAGTTCCCCAAGACTGTATTTCAGGAAAACAGTTAAGTGGAAAAG CAGTGTAGTGGCCAGTAGAGTAGCTCCACAGAAGCTTAAGAACTCTATCTTCCACAAGAG AAGACCCCCAGGCAAACCTCTTGCCCCATCTTGCCTTATGGACTCTTTAGACTTCTCGGC CTGGCAGTTACTTCTTCCGCCATGTATCTCAACTACGGGCATTCTCATTAGGTCCTGAGA GCTATACCTGATTCTATCACACACACACACACACACACACACACACACACACGACTCTTG ACTGCATACATACTCTCTTCTTTGTGAAAGGACTTCACCAACTTGCCCTGCCCACTCTCC TGCAGTCATGATGGCCCTTCCTCTTAGGCTCCTACATTGCTTCTTACACAGTTCTGCTTA CTACATTTTGACACGTTGCCTAGTTCAACCACAAATTTCTAGGCTGGTCTCCGCTTCTTT CCAAGGAACTTGGCACTTGAAAACTTTGTGTATAACACGAACAGCACTCCTAGCGCTGCT GAGAGAATATTTTGGAGTTCTTAACCTAGTTGGGCCTTCAACTTCCTGTGGTCATCTGGC TTTTTTGTACCATGGCCCTGCCCATTCTGGGCTCCGTTGAGAGCAGATTT
1	EXON 1	55,021,146	55,021,322	-	-	177	GTAGGGAAGTGCCCTTTCCTGAATTAGCAGATTTCGGTTAAGTGGCTACAGAGGAAGGTG GAGCTTGGGGAGCTGACCCAGAGTTTTCACTTTTGAGTTTAGTCCAGTATCACTGTGGTC ATATTTGGGAGAAGAGCTGAGCCCCCGAGGAAGGTGATCAACTTCTGAATCTCCCAG
	INTRON 1 - 2	55,019,448	55,021,145			1,698	GTAAGCACTTCCTCTGATTCCTGCA..........TCCAGTTATCCCTTCTCTCCTATAG
2	EXON 2	55,019,328	55,019,447	-	0	120	GTAGTCAATACCCATTGTGGAAACATGGCCACCATTGGGCCTTCTGGCCTGCATCCTGGA GAAAGAGCCTCAGTCTGCCCACACGAGGGCGTGCCAAGGCCCTCAGGTAGCTTAGAACTG
	INTRON 2 - 3	55,015,838	55,019,327			3,490	GTAAGCAGAGCACTGGGTACCAATT..........AATCCTGCCTCTCTCTTATCTGTAG
3	EXON 3	55,015,751	55,015,837	0	-	87	CCACCATCAGTACCAGGACCTTACACAGCCAGACAGTGCTGACTCTGTACAGGGGAATCA GCAGGAAACAGGAGCAGGACTTGAGCT
	INTRON 3 - 4	55,015,130	55,015,750			621	GTATGGTGGGCTGCGTTTGCAGTAG..........GCTTGCTTCTTCTTCCCACATGCAG
4	EXON 4	55,015,079	55,015,129	-	-	51	GAATGCTTGCAGCAATTCAAGGTGACCAGGACACAGTTGCAGCAGATCCAA
	3' upstream sequence						GCCAGTCTCCTGTGCTCCATGGAGCAGGCACTGAAGGGACAGGACAGTCCCGCTCCTTCT GTCCGGATGCTGCCCACATACGTGAGGTCCACACCACACGGCACCGGTGGGTAACACAGA CTCGGATGGGCGGCCAGACACGGGGAATGTGCTCTGACTGGGGGATGGGGGAAGTTCCTT ACTTCTGTCCACCATCTCTGAGGCCCTTTTCAATGGCCCTCTCAGACTCTGGAAGCTTTC CTGGGAGGCAGGCAGCTTTGCCAACTGCATGTCTTTCTATGACCTGTCTGCCGTCTAGAG CAAGGGGATTTCCTGGTGCTGGAGCTGGGGGCCACAGGAGCATCACTACGTGTGTTGTGG GTAACACTGACAGGCACCAAAGAATGCCGGGTGGAGCCCAGGAGCCGGGAGTTTGTGATT CCTCAAGAGGTGATCCTAGGTGCTGGCCAGCAGGTGAGCAGTCAGGGTGCCTCGTCTGGG GCTGGAGACTTGGCTGGGCGGTCAGAGCTAAGCACGCTTCTTGTTCCCATAGCTCTTTGA CTTTGCTGCCCGCTGCCTCTCTGAATTCCTGGATGCATACCCCGTGGAGAATCAGGGTCT GAAGCTTGGGTTCAATTTCTCTTTTCCTTGTCACCAGACAGGCTTGGACAGGGTGAGCTT GGGGGGCACATGGGGTCAGTGAGCGGAAAGCTACTATGGCCCTTGTGAAGGCCACAGGGA GAAAAAAATAACCCAGCTTCTCTGTCCCCAGAGCACCCTCATTTCCTGGACAAAAGGTTT TAGGTGCAGTGGTGTGGAAGGCCAGGATGTGGTCCAGTTGCTAAGAGATGCCATTCAGAG GCAGGGGGTAAGAGAAGGTCAGCGTGATGGAGGGAGGGCTGCCCCCGCTGTCCTGGCCTT GCCATCTGTAGGTTATGCCTGTGTTTCTGAAAGGTCCTGCTTTCTTTCCCTGTGCACAGC TTTTATCCATTTTGACCTTGGGGTTAATGTTGCTTCCATA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Hk3 (ENSMUSG00000025877)
Transcript ID	ENSMUST00000149644

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 46 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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