MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Lman2l (ENSMUSG00000001143)

Cross Reference

GO	GO:0003674, GO:0005789, GO:0005794, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Lman2l-005
OTTP	OTTMUSP00000024026
OTTT	OTTMUST00000051151
UniParc	UPI0000F22054
Uniprot/SPTREMBL	F6QN75
Vega_transcript	Lman2l-005, OTTMUST00000051151
Vega_translation	178970, OTTMUSP00000024026

Definition

codon_start:2
protein_id:ENSMUSP00000119798
translation:

XAIVRNIRYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDL
SDNHDVISLKLFELTGVRTPEEEKLHRDVFLPSVDNLKLPESECGILRNGPCLERRLQCP
WSLG

Chromosome

Length
Position(start - end)

3,598
36,424,767 - 36,428,366

Orient to Chromosome

minus

Link

Location : (1:36424767-36428366)
/

Detail Map

name	Lman2l (ENSMUSG00000001143)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Lman2l note : lectin, mannose-binding 2-like [Source:MGI Symbol;Acc:MGI:2443010]

name	Lman2l (ENSMUSG00000001143)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000192969

name	Lman2l (ENSMUSG00000001143)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000125304

name	Lman2l (ENSMUSG00000001143)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000115011

name	Lman2l (ENSMUSG00000001143)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000001171

name	Lman2l (ENSMUSG00000001143)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000152088

name	Lman2l (ENSMUSG00000001143)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000123583

name	Lman2l (ENSMUSG00000001143) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Lman2l-008 Vega_transcript:OTTMUST00000127607 Uniprot/SPTREMBL:A0A0A6YX25 UCSC:uc007aqd.1 GO:GO:0003674 GO:GO:0005789 GO:GO:0005794 GO:GO:0015031 MGI_trans_name:Lman2l-008 Vega_translation:178966 Vega_translation:OTTMUSP00000068811 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000068811 OTTT:OTTMUST00000127607 UniParc:UPI00053BD6A2
definition	codon_start : 3 note : transcript_id=ENSMUST00000192969 protein_id : ENSMUSP00000141806 translation : XKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQHERVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNIRYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTGVRTPEEEKLHRDVFLPSVDNLKLPESLLDQVHFSCAPDDTTQLVPAATVL

name	Lman2l (ENSMUSG00000001143) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14878.1 Uniprot/SWISSPROT:P59481 RefSeq_peptide:NP_001013392 RefSeq_mRNA:NM_001013374.1 Vega_transcript:Lman2l-001 Vega_transcript:OTTMUST00000051147 UCSC:uc007aqd.1 Fantom:F930016M20 EMBL:AK158015 EMBL:BC046969 GO:GO:0000139 GO:GO:0003674 GO:GO:0005789 GO:GO:0005789 GO:GO:0005794 GO:GO:0005794 GO:GO:0015031 GO:GO:0015031 GO:GO:0016021 GO:GO:0030246 GO:GO:0046872 MGI_trans_name:Lman2l-001 Vega_translation:178967 Vega_translation:OTTMUSP00000024024 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:AAH46969.1 protein_id:BAE34318.1 OTTP:OTTMUSP00000024024 OTTT:OTTMUST00000051147 UniParc:UPI000000BB48
definition	note : transcript_id=ENSMUST00000125304 protein_id : ENSMUSP00000117200 translation : MAAASRPSWWQRWRRRAWARDGAKLLLFLLLLGSGPGPRHVRAGQAVEYLKREHSLSKPYQGVGTSSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLKDWELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQHERVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNIRYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTGVRTPEEEKLHRDVFLPSVDNLKLPEMTVPPTPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQDQSRKRFY

name	Lman2l (ENSMUSG00000001143) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001297446.1 RefSeq_mRNA:NM_001310517.1 Vega_transcript:Lman2l-002 Vega_transcript:OTTMUST00000051148 Uniprot/SPTREMBL:D3Z4P2 UCSC:uc007aqd.1 EMBL:AC084391 EMBL:AC132456 EMBL:CH466536 GO:GO:0003674 GO:GO:0005789 GO:GO:0005794 GO:GO:0015031 MGI_trans_name:Lman2l-002 Vega_translation:178968 Vega_translation:OTTMUSP00000024025 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 protein_id:EDL14483.1 OTTP:OTTMUSP00000024025 OTTT:OTTMUST00000051148 UniParc:UPI00001E2FFA
definition	note : transcript_id=ENSMUST00000115011 protein_id : ENSMUSP00000110663 translation : MAAASRPSWWQRWRRRAWARDGAKLLLFLLLLGSGPGPRHVRAGQAVEYLKREHSLSKPYQGVGTSSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLKDWELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQHEAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNIRYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTGVRTPEEEKLHRDVFLPSVDNLKLPEMTVPPTPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQDQSRKRFY

name	Lman2l (ENSMUSG00000001143) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Lman2l-003 Vega_transcript:OTTMUST00000051149 Uniprot/SPTREMBL:J3QNZ7 UCSC:uc007aqd.1 EMBL:AC084391 EMBL:AC132456 GO:GO:0003674 GO:GO:0005789 GO:GO:0005794 GO:GO:0015031 MGI_trans_name:Lman2l-003 Vega_translation:178969 Vega_translation:OTTMUSP00000062560 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000062560 OTTT:OTTMUST00000051149 UniParc:UPI000268B57A
definition	note : transcript_id=ENSMUST00000001171 protein_id : ENSMUSP00000137028 translation : MAAASRPSWWQRWRRRAWARDGAKLLLFLLLLGSGPGPRHVRAGQAVEYLKREHSLSKPYQGVGTSSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLKDWELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPAGIPLHLSHGEQRLPQL

name	Lman2l (ENSMUSG00000001143) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Lman2l-005 Vega_transcript:OTTMUST00000051151 Uniprot/SPTREMBL:F6QN75 GO:GO:0003674 GO:GO:0005789 GO:GO:0005794 GO:GO:0015031 MGI_trans_name:Lman2l-005 Vega_translation:178970 Vega_translation:OTTMUSP00000024026 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000024026 OTTT:OTTMUST00000051151 UniParc:UPI0000F22054
definition	codon_start : 2 note : transcript_id=ENSMUST00000152088 protein_id : ENSMUSP00000119798 translation : XAIVRNIRYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTGVRTPEEEKLHRDVFLPSVDNLKLPESECGILRNGPCLERRLQCPWSLG

name
type	STS
link
xref	UniSTS_NUM:163045 UniSTS:C78282 UniSTS:RH126337
definition	note : map_weight=1 standard_name : RH126337

name
type	misc_feature
link
xref
definition	note : contig AC132456.5 1..167110(-1)

name	Lman2l (ENSMUSG00000001143)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000051150 Vega_transcript:OTTMUST00000051150 MGI_trans_name:Lman2l-004 OTTT:OTTMUST00000051150
definition	note : retained_intron note : transcript_id=ENSMUST00000134594

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Lman2l (ENSMUSG00000001143)
Transcript ID	ENSMUST00000152088

Reports
substitution
cSNPs	2
Insertion	0
Deletion	10
SNPs	+1kb 36428426(c.-61C>T), 36429552(c.-1187G>A), 36430232(c.-1867G>A), 36430239(c.-1874A>G), 36430555(c.-2190A>G), 36431575(c.-3210T>C), 36432531(c.-4166T>C), 36432717(c.-4352G>C), 36432719(c.-4354A>C), 36432791(c.-4426C>T), 36432793(c.-4428G>A), 36432896(c.-4531T>C), 36432910(c.-4545T>C), 36432945(c.-4580G>A), 36433056(c.-4691A>G), 36433083(c.-4718A>G), 36433249(c.-4884T>G), 5'UTR CDS 36424800(c.339G>A), 36428169(c.114G>A), 3'UTR 36424562(c.205C>A), 36424701(c.66T>C), 36424737(c.30A>T), INTRON 36424963(c.182-6C>A), 36425221(c.182-264T>C), 36425317(c.182-360G>A), 36425538(c.182-581G>A), 36425539(c.182-582T>C), 36425644(c.182-687T>C), 36425724(c.182-767G>A), 36425796(c.182-839T>C), 36425846(c.182-889C>T), 36425926(c.182-969C>G), 36425982(c.182-1025T>C), 36426023(c.182-1066A>G), 36426033(c.182-1076G>C), 36426261(c.182-1304T>C), 36426287(c.182-1330G>C), 36426382(c.182-1425G>T), 36426553(c.181+1549T>C), 36426761(c.181+1341C>A), 36426785(c.181+1317T>A), 36426829(c.181+1273A>G), 36426947(c.181+1155T>C), 36427160(c.181+942G>A), 36427368(c.181+734T>C), 36427481(c.181+621A>T), 36427500(c.181+602C>T), 36427511(c.181+591C>T), 36427603(c.181+499C>T), 36427649(c.181+453G>A), 36427650(c.181+452A>C), 36427763(c.181+339C>T), 36427977(c.181+125T>C), -1kb 36419991(c.4776A>G), 36420190(c.4577C>A), 36420470(c.4297G>T), 36420659(c.4108A>T), 36421122(c.3645G>C), 36421201(c.3566G>C), 36421906(c.2861T>C), 36421916(c.2851C>T), 36422182(c.2585T>C), 36422185(c.2582G>A), 36422193(c.2574A>G), 36422209(c.2558G>A), 36422217(c.2550A>G), 36422575(c.2192C>T), 36423672(c.1095T>C), 36423994(c.773G>A), 36424072(c.695T>C), 36424181(c.*586G>A),
Deletions	+1kb 36430157 (c.-1801_-1793delCCAATGACT), 36431719 (c.-3356_-3355delTT), 36431733 (c.-3376_-3369delATATATAT), 36431976 (c.-3617_-3612delGTTTTT), 36432539 (c.-4175delA), 36432889 (c.-4525delC), 5'UTR CDS 3'UTR INTRON 36425199 (c.182-245_182-243delTTT), 36427001 (c.181+1099_181+1100delAA), -1kb 36422019 (c.2746_2747delAG), 36423785 (c.979_981delCTC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	0
synonymous substitutions	36424800 (p.Glu113Glu), 36428169 (p.Glu38Glu),
non-synonymous substitutions
B6 transcript (ENSMUST00000152088)	AIVRNIRYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDLS DNHDVISLKLFELTGVRTPEEEKLHRDVFLPSVDNLKLPESECGILRNGPCLERRLQCPW SLG*
MSMv4 transcript	AIVRNIRYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDLS DNHDVISLKLFELTGVRTPEEEKLHRDVFLPSVDNLKLPESECGILRNGPCLERRLQCPW SLG*
homology	100.00 (124 / 124)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Lman2l (ENSMUSG00000001143)
Transcript ID	ENSMUST00000152088

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CTGACATTTCTTGCTGCTTAGAGTCTGTTGTCTCAGGAGTTCCGAGTCTC TGGTCTTGACTGCATTTCCACCTTGCATGTTGACTGTCTGGAACAGTGTGGAGCTTGTCC AAGGAGCGCATGCCTCGTCTTCCCTCCCCTTCATCACTCTGCCCCTCTGCAGTGACTTGC ACTGGGATCATTCTGGAATGGCTAGCTCACCAGTTTTGAGGAGGAGTTTGCTTGTATAGC TCCACTGGAGAGAAGGCAACTAAGTAGTGGGAACCCAAGTAGGTGACGTGGGACCTTGCT CTCTCACTGTTGGTGCCCGTGGGGGCGTTACGTGTGGGTGGGCTGAAAGTCTTGACTAGG AACAGTGGTTGTGGCTAGAGAAGCCCCCAGAGCCTGTCCCAGCAGTGCTTTCTGGATTCA TTTAGTATCAAATACTGGTAGGATTTTAGGGTCAGAAAGGAGCTATCCAGACTGGAAGGA ATCCCTGACCACTCAAAACAGGTATTTTTGAGAATGCCTGCTGTGTGCCAAACACTTCAC TTGGGCAGAGGATAGAGCTGAAGTGGAGACCTGGGAGATGGTTTTCCTTTTCAAGCGGCA GCTGGAGAGAAAGGTGCCTATCCACGAGGAGGAGACGCTTGGTGTGCAGTACCAAACAGT GATTGCTGGGAGGAGTGGAGTGACCCCCAGCCTCTTGCAGGGCCACTTCAGGTCTACCCT GGGTCTGCAGAGTTCCTAACATCCAGTGTGGAGCCCATGCTCCCTGAGTCCATGCCCCCG TGCATGCTCATCTGTATGTGAGTCCTGCTGGGGTGGGCTGCTTGAGATGAGGCAGGGGGC TCAGTTCCTCTCACTGTGGTGCAGACATGGCTGAGAGTCTTCCTTCCTGTCTGTTTTTCC CTCCCTGTGTTCCAGCGGGTATTCCCCTACATCTCAGCCATGGTGAACAATGGCTCCCTC AGCTATGATCACGAGCGGGATGGGCGGCCTACAGAGCTGGGTGGCTGCAC
1	EXON 1	36,428,300	36,428,366	-	0	67	AGCCATTGTCCGAAATATCCGTTATGACACCTTCCTCGTGATTCGCTATGTCAAGAGGCA TCTGACG
	INTRON 1 - 2	36,428,217	36,428,299			83	GTGAGTCCTGTCTTAGAGCAGCTGG..........TTTGATACTCTTTGTCTTATTCCAG
2	EXON 2	36,428,102	36,428,216	0	1	115	ATAATGATGGATATTGATGGCAAACATGAGTGGAGGGACTGCATTGAAATGCCCGGGGTC CGGCTCCCCCGGGGCTATTACTTCGGCACTTCCTCCATTACTGGGGATCTCTCTG
	INTRON 2 - 3	36,424,958	36,428,101			3,144	GTACTGTACTGCTCCTTCTCTCTGT..........TAATCCTCCGTTCTCCCTCATTTAG
3	EXON 3	36,424,506	36,424,957	1	-	452	ATAACCATGATGTCATTTCCCTCAAGTTGTTTGAGCTGACTGGAGTGAGGACCCCAGAAG AAGAAAAGCTACATCGAGATGTATTCCTGCCCTCGGTGGACAATCTGAAGCTGCCAGAGA GTGAGTGTGGGATTCTGAGAAATGGCCCGTGCTTAGAAAGGAGGTTGCAGTGTCCGTGGA GTCTGGGGTGACTGGTACCCGCAGCTCTCAGGCCCTTCTGTGCTCCTGTGAGGCACAAGG AATGCCTGTACTACCTCCCCATCTGTCCTGTTACAGGCAAAGCATCAGCAACAGCAGGCG GGCGGCTGCTTCATTTTTTAATAGAGCCACCTAGAATGGGGGAGGTCGGGGATCTGGTTC CTCAGAAGTGGGTGTCAGAGACTGGGGCCTGGACAACCTGTTGGCCCACTGTAGGGTAGG CTCTGTATTCCTCACTGTTGTTTTACTTCCTC
	3' upstream sequence						AGTGACAGTGCCACCAACGCCCCTGAGTGGCCTGGCTCTCTTCCTTATTGTCTTCTTCTC CTTGGTGTTTTCCGTATTTGCCATTGTCATCGGGATCATACTCTACAACAAATGGCAAGA CCAGAGCCGGAAACGCTTCTACTGAGCCCGCTGCCATCAGTCCCTCTACGGTGTTTACCA TAAGGTGTGGGTCTGAGCATACAGCCTAGCGAGTCGGCCCATTGTTCAGGGACTGTGTTC TGTCACTGGAGATTTGAATGCTAGGAGCCTGCATCCTCATGGTCATCCACGGGAACATCT CACTGGCCCAGGATACCACCACAGAGCCGAGCAGCTGTGGCATGCCTTTCCCTGGAGTCC TTCCATTTCCGAGTACAGAGACATGGAGAAATACCTGCTGTGATGCCTAAATTACACAAT TGGGCAGATAGCCCAAGTGTGGACTGGACACAGTAGGCCTTCCATTGCATTTTAGAATTC CCAAATAGGAAACCAGAACCGGTACACTCTGAAGACCCACTTACTGGTCTTTGCTTTGCC CATGCCTCTTTCTACTTCAGGAGCTCCTTGGCAATCTGGATGGAGACTTCTCCCTCACCC GCCTGTCTCCCTCCACTCACCGTCCTCTTTATATGCATCCTTAGCTAGGAAAGAAGTTTG CCGCTCTCATTAGCTGGACCTGGGGCTTCCTGCAGCCTCTCATTGCTTCAGCCTCTTCTC TGCTGGGTGGATCCTGTTTCTGACTGTGGCTGTGTCTTCTGCTTTCCTCATCAAAGGAAA CCTTCAGGCCTTTGGATGGTTTGGCTAAAAGTTGTTACAACTCAAGAGAAGCTCGGAGGA GTTGACAGATGCTGTGAGGTTAACTCTGGAATCATCCAGGTCCAGGTGTGCCTCAGAGAG CAGTGTTGGCTGCGTCTGGACCTGCTGGAGCCTGCTTAGTCGCATGTGTTGTGTTTGTCC TGATTCTGCTCTGAGTGTTGGAAGTGATAAGCAGCTTTCT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Lman2l (ENSMUSG00000001143)
Transcript ID	ENSMUST00000152088

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 124 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information