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Target CDS Information

Gene Symbol (Gene ID) Kdelc1 (ENSMUSG00000026047)
Cross Reference
EMBL AC123800
MGI_trans_name Kdelc1-006
OTTP OTTMUSP00000046511
OTTT OTTMUST00000086001
UniParc UPI000198D19D
Uniprot/SPTREMBL D6RE32
Vega_transcript Kdelc1-006, OTTMUST00000086001
Vega_translation 179185, OTTMUSP00000046511
Definition protein_id:ENSMUSP00000114287
translation:
MFSISLLSCLFLGTVPALAQTGGERRLSPEKSEIWGPGLKAHVVLPARYFYIRAVDTSGE
QFTSSPGEKVFQVKISAPDEQFTRVGVQVLDRKDGSFIVRYRMYASYRNLKIEVKHHGQH
VAESPYVLRGLKKNFQG

Chromosome 1
Length
Position(start - end)
2,211
44,116,287 - 44,118,499
Orient to Chromosome minus
Link Location : (1:44116287-44118499)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kdelc1 (ENSMUSG00000026047)
Transcript ID ENSMUST00000152643
Reports
substitution
cSNPs1
Insertion8
Deletion20
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 44117192 (p.Pro78Pro),
non-synonymous substitutions
B6 transcript
(ENSMUST00000152643)
MFSISLLSCLFLGTVPALAQTGGERRLSPEKSEIWGPGLKAHVVLPARYFYIRAVDTSGE
QFTSSPGEKVFQVKISAPDEQFTRVGVQVLDRKDGSFIVRYRMYASYRNLKIEVKHHGQH
VAESPYVLRGLKKNFQG*
MSMv4 transcript
MFSISLLSCLFLGTVPALAQTGGERRLSPEKSEIWGPGLKAHVVLPARYFYIRAVDTSGE
QFTSSPGEKVFQVKISAPDEQFTRVGVQVLDRKDGSFIVRYRMYASYRNLKIEVKHHGQH
VAESPYVLRGLKKNFQG*
homology100.00 (138 / 138)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kdelc1 (ENSMUSG00000026047)
Transcript ID ENSMUST00000152643
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCCTCTTGACCTCACTGGCCGAGAAGCGAGGGTGCAAAGAGAGGATGGCC
ACTGCAGGCCGGGTGCCTGGGATCCGCTAGCGCAGCGTGGAGACCCGCTCCTGAAGAGAG
TACAGGGATACCCACGGATGCACCCCCCTCAGGCCGAGCTTTCTTCTGGTGATTTCTATC
CCTTACATCTCTCCTCAGAGACTCAGCTCGACCCAGATCCTTCCAGGGGCGCGGCGGGGT
GGGGGTGGGGGTGGGGGTTGTCCTGCAACGAGGCAGTGACGGCGCTACGGAGAGGCGGAG
CGCACCGCAGTGCCTGGGCTAGGCCCTCCGCTGGGGAATACCTCTGTTCCTGTTGGGTCC
CGGAACTCTGGTGCTGGAAGGCAACACCAGATCTGCATCCTCAAGTCTCCTACCCAAGGC
CCAGAATCTTTCGTCCCATTGAGCGCACAAGAATAGCACCGAGTGACTGGGTATCATTGA
TAACACCTAGCCTCCCTTTCAGCGTTTACTATATACCTGCCATTTGCGGTGGATACCTTG
AACAAAATATAAGTTGGGAAATCTTTGCTGTGACTCCAGACATGCCAGTTGCGCAACTGT
AGTATTTAAGGTTGCCAGAAAGCCGTGCTCCAAAGTTGAAAAAAGAAGTAGAAAGGAAGG
TAGGGGGGGAGAAAGGAGGAGGGAGAGTGAGGGACGGAGGGAAGGGACGAAAGTAATTGG
GGGTGAACTCCTGGCAGGATTTCCGCTAGTCCTATGGCGGACTACATATCCCAGGAAGCT
AAGGGGCCCGGGACGCGTTTTCCACTCTGACCCACTCATCCACTAGCAGAAGACTTTACT
AAGACTGGTCACAGCGCAGGCCAATCCTTCTCCTTTCACCTTGGCTAGAACTTGCGACGG
ATTCGTTCCCAAAGTGATGCTCTAGTGGCAAGAGTAACACAAGTTTGTCATTGTCCGGAG
AAAGTGGAGCCTGCGGTTCTTAACCAGGTTCAGCAGAACGTGTGGCATCC
1 EXON 1 44,118,318 44,118,701 - 2 384
TTCTCCTGGACATGCCACCGCTCGGGTTGTGACATTCTTGGGCACAGCATAGTCCCACGC
GCGGACCCCGCACGTCAAGCGACACTTTAGGGACTTTGACTGCTTCTAGGACTGACCACC
GTCCTCCTACCTACCCAGGCTAGCTCCGTCCACTTAGCACGTTTGCATTTATTCGTGGAT
CTTCCAAGACTCGGTCTTGTAAATGTTCAGCATTTCGCTGCTTTCCTGCCTTTTTCTGGG
GACTGTGCCAGCACTTGCCCAGACCGGCGGAGAGAGGAGGCTGAGCCCAGAGAAGAGCGA
AATATGGGGACCCGGGCTAAAAGCACACGTGGTCCTTCCTGCCCGCTATTTCTACATTCG
GGCGGTGGATACCTCAGGGGAACA
INTRON 1 - 2 44,117,244 44,118,317 1,074
GTAAGTGGAGAAATGACTCCTCAAC..........CATCTCTCATTGTTTTCCATAACAG
2 EXON 2 44,117,038 44,117,243 2 1 206
GTTTACATCTTCTCCAGGTGAAAAGGTGTTCCAGGTTAAAATCTCAGCACCGGATGAGCA
GTTCACGAGAGTTGGTGTCCAGGTTTTAGATCGAAAGGACGGTTCCTTCATAGTAAGATA
CAGAATGTATGCCAGCTACAGAAATCTGAAGATAGAGGTTAAACACCATGGGCAACATGT
TGCCGAGTCTCCTTATGTTTTAAGAG
INTRON 2 - 3 44,116,313 44,117,037 725
GTATTTTGAAACAAAAATTTATGGT..........GTGTTCATGTTTGTGTAAGTCTTAG
3 EXON 3 44,116,155 44,116,312 1 - 158
GATTAAAAAAGAATTTCCAGGGCTGAAGCGATAGCTCAGTGATTAAGAACACTGGCTGCT
TTTCCAAAGAACCCGAGTTTGGTTCCCAGCATCCACATTGTAGTTCAAGACTGACTGTAA
CTCCTGACTGAATAATCAAGTTAAATATGTAGTCATAG
INTRON 3 - 4 44,114,900 44,116,154 1,255
GTAATTCTTGAAGGAATGATCTACT..........TATACTGCTGTCTATCTGTAAATAG
4 EXON 4 44,114,784 44,114,899 - - 116
GACCAGTTTACCATGAGAACTGTGACTGTCCTTTGGAAGACAGTGCAGCCTGGCTACGGG
AGATGAACTGTTCGGAAACAATCTCTCAGATTCAGAAAGATCTGGCACATTTCCCT
3' upstream sequence
ACTGTTGATCCTGAAAAGATTGCAGCAGAAATCCCAAAGCGATTTGGTCAGAGGCAAAGC
CTGTGTCACTATACCTTAAAGGACAATAAGGTATAATATGATTGAGGTTTGCTTGTTCTC
TGGACTCTGTAATATCTTGACCTTTTGATTATATCTGGCTACTTTTTTAAAACACCATTC
TATGTACATATTTTGACAAGCCTTTTTTTTTCCATATCTGCCAGTCCCTTTGCACACATG
TAGTAAATGTCAAATTCTCTTCTAGGTTTATATCAAGACTCATGGTGAGCACGTTGGCTT
TAGGATTTTCATGGATGCAATACTACTTTCATTGACTAGAAAGGTTAGTATATTTTCTCT
GCATTATGATAGCAATGTCAATCTAGGTTTTATAATTTAGTTTTTCAAAACATTGTTAAC
ATCAATATAAAATGTTCTATTCTGGTGCCTTCTATATTTGCTATTCTAAAGTTTATTTTT
TTCCTAATATATGTATTAGATACTAAGGACAGCTATATATAGTACCTTAAAAAAGCAGAG
GATGGCTCTGGAGACCATTAATGAAAATTCAAAGTGTTGAAAGGGCCACACTCCTCAGAT
TCTGGCTACTTGTGGTCCTATATTCTGGGTGCTCCTTTGTTCATAGTTTTGTCAGTCTAA
TCTCTACCTCTTGTCACATGGCCGCCTGCCCTCAAGAATCTGAGTCACTGGGTCTCCTCC
TGTCCCCTTCCCTTTCTTCTCCCAAAGATGCCAATCATATTGGATTGACAATCCCATCCC
ACATACTTGTGTGGCCTCGTCTTAACTAATTACATCAGCAATGACTGGTTTCTGAATAAG
GTAACTCTAAGACACTGGGATTTAGGACTGGCATATACATCTTTGAGGGGCAGGGGGGGA
AATAAGTCAATCTATAGCAATGGTACACATAGAAAGAAAATGCCTCTGCCTCATTAACAG
GAACCCAGGGCTAAAGCCCCAAGTGCTATATTTCCCAGAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Kdelc1 (ENSMUSG00000026047)
Transcript ID ENSMUST00000152643
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 138 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information