top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Cross Reference
EMBL AC107738
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Plekhb2-003
OTTP OTTMUSP00000037927
OTTT OTTMUST00000073324
UniParc UPI000161144A
Uniprot/SPTREMBL D3Z3L2
Vega_transcript OTTMUST00000073324, Plekhb2-003
Vega_translation 178938, OTTMUSP00000037927
Definition protein_id:ENSMUSP00000116777
translation:
MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH
ECRDI

Chromosome 1
Length
Position(start - end)
1,593
34,861,881 - 34,863,475
Orient to Chromosome plus
Link Location : (1:34861881-34863475)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Transcript ID ENSMUST00000152654
Reports
substitution
cSNPs2
Insertion14
Deletion18
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 34863118 (p.Pro50Pro), 34863139 (p.Arg57Arg),
non-synonymous substitutions
B6 transcript
(ENSMUST00000152654)
MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH
ECRDI
MSMv4 transcript
MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH
ECRDI
homology100.00 (65 / 65)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Transcript ID ENSMUST00000152654
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTCCCTGCAGGGATTCTTCAGTGTTCCCCACCATAATCTTTTCTTCTCCT
GACCCAGTGACCAGGTCTGTCTTGTACCCCTGCCCTTTCCTCAGGGTCTTTTCCGGGTTC
ACCAAAAGCCCATTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAG
CCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCC
TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACCGCCCGGCCCAAATG
CCCACTTCTTGATGTATCCTCCCCAGTCCTACGCATCCCTTCCCATGTGCCCCCTGTCCT
AAATGGTATCTTCCCGTAGAGCTGCTTAGCCCTTACCCTCCCTCCCCTTCTCCACCTATG
TCTGGATAAGGTGGTGGGGGCTCTTCTGAGGATGGGAGCAGTCTGGCCTTTCTGATAGCT
CCTGTGACTTCACAAAGTACCGCTACTGCTTTACTGAGACCCCAGGGCTTTCTTCTTCCT
GGGGTTGCCCTGCTCCACTGGGCCTCCTGCTCCTCTGCACTTTCATGGTCTGTATTATAG
TGCCTTTAGTTTTCCGTGTTTGATTGTACAAGCCCTGACTCCTTTTGGTTACATTTTATT
GTTATGCAATAACAGTAGTTAGATTGAGACTTTGGGAGGTCAGGGGTTTTTATTTGGGGT
AAGCAGAATTTGTTGTGTCCAACTCTCAGGTGCAGAGTGGCTTACAGAGAGTCTTCATAA
AGGAGTGGAGAGATTGCCAGTGTTTTAGAAAGGTGGGAAGCTCACAGATTCTAGCGAGAC
TACGTGGCTCGTTCAGAACACAGTGACTAATTCCTCCAACCTCCCACCCCCCTCGTGCAT
TTCATTTGACTAGGATAGGTTGAAGCGACCCATGCAGGAAGTGACTTGTCCCACTTTGCA
GGAAGTGGTAGGGTGGCGACTGGGATTTATTGCCTACTTACTTAGGGCAG
1 EXON 1 34,851,837 34,851,977 - - 141
GGAGTGTTAGCTGGAGTATTGACCAAACATGGCTGGAATCCACCAGCCTGTGCTGTGGGC
TTGCCTTTTGGAGTGAAGAAAGCCCTCCTTTCTTAGGCTGCTTTGACAGGTAGCTTGGGA
AGAGACCCTCTAGCTCAGCAG
INTRON 1 - 2 34,851,978 34,861,872 9,895
GTACTTGCCTGGGTTTATCTGGTGT..........ACCCTGTCTGCTCTCTCTCCTGCAG
2 EXON 2 34,861,873 34,861,917 - 1 45
CTGGAGAGATGGCGTTCGTGAAGAGTGGATGGTTACTTCGGCAGA
INTRON 2 - 3 34,861,918 34,863,005 1,088
GTGAGTAGAGACATCTGAGAACCCT..........CCAACTCTCTCTGTGTGCCCCCCAG
3 EXON 3 34,863,006 34,863,158 1 1 153
GCACCATTCTGAAACGCTGGAAGAAGAATTGGTTCGACCTGTGGTCAGACGGTCACCTGA
TCTACTACGATGATCAGACTCGGCAGAGCATAGAGGATAAGGTCCACATGCCTGTGGACT
GCATCAATATCCGTACGGGGCATGAGTGCCGGG
INTRON 3 - 4 34,863,159 34,863,470 312
GTAAGCTGTGCCCAGGACCACCACC..........CCTCCGTTCTGCCTCTCTCTCCTAG
4 EXON 4 34,863,471 34,863,475 1 - 5
ACATC
3' upstream sequence
CAGCCTCCAGATGGGAAGCCCAGAGACTGTCTGCTGCAGATCGTTTGCCGAGACGGGAAG
ACCATCAGTCTCTGTGCAGAGAGCACAGACGATTGCCTGTGAGTGCTCATTTGATTATGT
GTTTAATTCACAGAGTGTTTTCTACTCTAATTTCCCTTTGTTAGGAAGGGAAGAGAGTGG
GAGGACAGCCTCCCTCCAGCCTGGGGCTCTGGGAGAAGCGCAACAGGGGCTTTTCTTGGA
TCTAGTTTCTTTCTTTCTTGTGTGTGTGTGTACTTGTGTGTGTCCACAATGTATATACAT
GCCGTGGCAAGGGTGGAGGTCAGGAGACAATGTTTGCGTTGGTCCTCGCCTTGCATCTTG
CTTTTGAGACAGGGTCTTATTGATTTTTTTCATTATGTTTCCCCATGACTTCCAGAGAGT
CTCCTGTCTCTAGTCCTCATCTCTCCATAGGAGTGCTGCATCATACACTCTAGTGCTACA
CAGCTGAACTTTTTAGAAGTGGTCAGAAGTGCAATCAGCTCCTTTGCAGGCCTCCCTGGG
TCTGTGGGACCCTTACTGGCCTCTCCTCATCTTGCCCATACCCAGCATGGTGGACTGAGG
ATCTTAAAGTTTGACCCCATTTTCATTTGATTTCATGTGCAAAGACCCTGTTTCTTGGTG
AGCCACACTTATCAGTGCAGAGGACCCCAAGTTCAGTGTGTCTCTTGAAGGCACAAAGTT
CAATCCATGGGAACAGAGACCTCTGAGGAAAGATGAGGAAACAAATCTGGATTGCCTTCT
GCAGCCATCAAGTGAAGAGAATGGGAGGATTGTTTATGCAGCTATCTATCTACGCTCATG
GGAGTCCTCCTGTATATACCTCCTAAGTGCTGCGATTAGGGCCTAGCCGTCCCTCTCTAC
ACAGAAACCTTTCCGGGACTGCCGAGGCTTATCTGAACTTAAGAATCGTTGGAATGTTGG
ATTACTTCAGAGTACCCTGTTTTTTCATTTTTTCCAGGGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Transcript ID ENSMUST00000152654
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 65 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information