MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Pdlim7 (ENSMUSG00000021493)

Cross Reference

EMBL	CT009762
GO	GO:0001725, GO:0001726, GO:0005515, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Pdlim7-009
OTTP	OTTMUSP00000043947
OTTT	OTTMUST00000082035
UniParc	UPI0001889D1C
Uniprot/SPTREMBL	B8JJB1
Vega_transcript	OTTMUST00000082035, Pdlim7-009
Vega_translation	214583, OTTMUSP00000043947

Definition

protein_id:ENSMUSP00000118867
translation:

MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENA

Chromosome

13

Length
Position(start - end)

3,440
55,508,966 - 55,512,407

Orient to Chromosome

minus

Link

Location : (13:55508966-55512407)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Pdlim7 (ENSMUSG00000021493)
Transcript ID	ENSMUST00000153426

Reports
substitution
cSNPs	1
Insertion	8
Deletion	12
SNPs	+1kb 55513251(c.-844T>C), 55513409(c.-1002T>G), 55513437(c.-1030G>C), 55513722(c.-1315T>C), 55513790(c.-1383T>C), 55513791(c.-1384C>T), 55514196(c.-1789C>T), 55514464(c.-2057C>T), 55514476(c.-2069G>A), 55514692(c.-2285C>A), 55514748(c.-2341G>T), 55514821(c.-2414G>A), 55514998(c.-2591C>A), 55515091(c.-2684C>T), 55515206(c.-2799G>A), 55515440(c.-3033G>A), 55515731(c.-3324C>T), 55515910(c.-3503G>A), 55516075(c.-3668G>A), 55516097(c.-3690C>A), 55517176(c.-4769A>G), 55517425(c.-5018G>C), 55517440(c.-5033G>C), 55517595(c.-5188T>C), 55517661(c.-5254G>C), 5'UTR 55512581(c.-63G>C), 55512632(c.-114G>A), CDS 55509035(c.105C>T), 3'UTR INTRON 55509053(c.97-10T>C), 55509077(c.97-34G>T), 55509250(c.97-207A>T), 55509368(c.97-325C>T), 55509915(c.97-872G>C), 55509962(c.97-919A>T), 55509966(c.97-923A>G), 55510002(c.97-959C>T), 55510012(c.97-969T>C), 55510058(c.97-1015C>T), 55510171(c.97-1128C>A), 55510297(c.97-1254G>C), 55510300(c.97-1257C>A), 55510338(c.97-1295C>T), 55510391(c.97-1348G>C), 55510417(c.97-1374T>G), 55510633(c.97-1590G>A), 55510937(c.96+1375G>A), 55510946(c.96+1366T>C), 55510970(c.96+1342C>G), 55510993(c.96+1319C>G), 55511248(c.96+1064A>T), 55511502(c.96+810C>A), 55511534(c.96+778T>C), 55511606(c.96+706G>T), 55511655(c.96+657A>G), 55511673(c.96+639A>G), 55511929(c.96+383C>T), 55512015(c.96+297A>G), -1kb 55504008(c.4958C>A), 55504745(c.4221C>T), 55504906(c.4060A>C), 55504913(c.4053C>T), 55505054(c.3912T>C), 55505139(c.3827G>T), 55505207(c.3759G>T), 55505474(c.3492G>C), 55505540(c.3426C>G), 55505742(c.3224C>T), 55506426(c.2540G>A), 55506442(c.2524G>A), 55506683(c.2283T>C), 55506866(c.2100A>G), 55506963(c.2003C>T), 55507320(c.1646T>C), 55507706(c.1260G>T), 55507780(c.1186T>C), 55507952(c.1014A>G), 55507968(c.998C>T), 55507978(c.988G>C), 55507980(c.986T>A), 55508154(c.812C>T), 55508374(c.592T>C), 55508831(c.*135T>C),
Insertions	+1kb 55514300 (c.-1894_-1893insGG), 55514584 (c.-2178_-2177insGAGAGAG), 5'UTR CDS 3'UTR INTRON 55509689 (c.97-647_97-646insCGCT), 55510373 (c.97-1331_97-1330insCTT), 55511724 (c.96+587_96+588insGT), -1kb 55506559 (c.2405_2406dupCA), 55507138 (c.1826_1827dupCT), 55508172 (c.792_793dupTG),
Deletions	+1kb 55514496 (c.-2094_-2090delGGTTT), 55514729 (c.-2329_-2323delGTGGGAA), 55515462 (c.-3057_-3056delGT), 55516513 (c.-4107delA), 55517308 (c.-4903_-4902delCA), 5'UTR CDS 3'UTR INTRON 55511810 (c.96+501delG), 55511813 (c.96+498delG), -1kb 55505137 (c.3828delA), 55505753 (c.3211_3212delGT), 55507981 (c.983_984delAA), 55508146 (c.818_819delCA), 55508525 (c.440delC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	55509035 (p.Pro35Pro),
non-synonymous substitutions
B6 transcript (ENSMUST00000153426)	MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENA
MSMv4 transcript	MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENA
homology	100.00 (58 / 58)

Exon Detail Report

Gene Symbol (Gene ID)	Pdlim7 (ENSMUSG00000021493)
Transcript ID	ENSMUST00000153426

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GGGTTTCAAACGGATGCTTTCCTCCACTCCGCCAGTGGGAGGCGCAAGGG GCTTGGGCGAGAGCCTGAAGCGGGGCACAGGCTGGGCAGCGACCCGACTGGCGAGGGTAA GTGCCCGATCTCACCTTCCCTCTCCTGGAGACTCAGGGTTTTTTGACTGGGTGGGGCCTC CCACCGACCCCGGGATGTCCACTCGTTTGGCCTGGGGAGGGCGTGGCCTAGGGCTCCGCC CCCTTCCGCGGGCTCAAAAGGCGCGGCGTCCGCGGAGGCGGGCTCAGAGCGCAGCGGCGG ATCCCATCGCGGCTCCCGGAGGCTGCCAGGCAGCGGCCCAGGCGGGCACTCAGGTACCGG CGTCCGCGAGGGGGTTCCTGGCCTGCACCCTACGGGGTCCTATGGCCCGCTGAGGCGCTG GGGAGGGCGTGGGTGGTCGTGAAGAGTGCCAGATTCCCTCGGCTGGCTCCGGCCGCAGCC TCCGCCCCCGCCTTCCTGCGGCGAAGTGGGGCTGATTGGCGCCTGCGCCACTGTGTGCGG TGGGGACGCGGCCAAGCGCGGGGCTGGGGCGGGAGACGAAGGGAAACAGAGTCATGTTGG CAAGGGAGCATCGTGCGTGGGTGGCACCACTTTCTCTGGCTTCCAGAAAGGATCCCCTCT CTGGCCGTGCGTAAGGGACACGGCCCCCGTCGCTCTCTACAGGACCAGTACCCCGTTTTT CTTTTCCCCTTTCAGAGACCAGGGGTCCCGCCCTGACCACCAGCAGCCTCGACCTGTCCC AAAATGGCTAGGACCCGCTCCAGCGTCCTCCTTCTCCACCCCTCCCCCTCATATCCCGAG CCCCTAACGTGCTCCCTCCTCGGGCTCTCTACAGTGTCAGCTTACACGCCTTATATAGTC CGAGCAGGCTCCGGCGGCGGCCTGCCTGCCGGGACCCGGGGAAGGAGGGGGAGCTGGCCC CTGACTCACCCCGCCACCCTCCTGAGATTCCAGGTTAGCTTGGGCAAAGC
1	EXON 1	55,512,530	55,512,709	-	-	180	AGTGCCAATTAGCCCCACAGCCAACCCCTGGAAGAGAAAAGCACCTGAGCTCGGAGAGGC CTCTCCAGGCCCTCCCGATGGCAGGGGGCAGGGTGGGGAACCACCTTGTCTGTTGTCTGT GAGAGGTCCGCCTGCCAGGAGCCCAGCCAAGCCAGCTGAGATACCTGCCTCCCAGTGCCT
	INTRON 1 - 2	55,512,419	55,512,529			111	GTGTGTGTTGAGCGTCCGCCCGTGC..........AGACACTTTCTCTTCTTCCTCACAG
2	EXON 2	55,512,312	55,512,418	-	0	107	GAGCAGGCACGATGGATTCCTTCAAGGTGGTGCTGGAAGGGCCAGCCCCTTGGGGCTTCC GTCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCTATCTCTCGG
	INTRON 2 - 3	55,509,044	55,512,311			3,268	GTGAGCCTAGGTGGGGGAACAAACT..........GACCTCTGACCATTCCTCTCTACAG
3	EXON 3	55,508,966	55,509,043	0	-	78	CTCACGCCTGGAGGCAAAGCTGCACAGGCCGGTGTGGCTGTGGGAGACTGGGTACTGAAT ATTGACGGTGAGAACGCG
	3' upstream sequence						GGCAGCCTCACGCACATCGAAGCCCAGAACAAGATCCGCGCCTGTGGGGAGCGCCTCAGC CTGGGTCTTAGCAGGTACAGGTGCTGACAGGCAGAAGGGGTGTGGATAGCCTCTGGTCTC TTACCTGCTGTGACCGCGTCTCTCTTCTTCTCCAGAGCCCAGCCTGTTCAGAGCAAACCA CAGAAGGTAGGTTATACAGGAGATGTCCTGGCTGAGAGAGGGAGGGGCTTAGCCTGGGCT AACCTACCACCCCTGGCCCAGCCTTGGGACCCTCTCTCTGGCTAAGGGCAGACGCCAGAA CAGGCAGGGTCTGGGGAACATGAGAGTGGAGCTAGGAGCTGCCGCACGGTCCGGGCGCCA CACGTGCCTGCCTGCCTATCTGTCTGCCTGCTTCTTCCCACAAGCCTGTGCTGTGTGTGC CTACCCACCCTTGGTCACCCTTGGTCCAGAGCGGGTTGAATTCATCACTTCCCAATGGGC CCCTTGAAGTCGTAGTTACTACCCCTTCATCCTAGCCTCTGGCCAGATGTGTAAGAGTGG GCCGGACCTGTCACTGTTCTTGGTGGTGGTGACTCCGCTCCCACCTCAGCCCCAACTCCC ACCCACCCACCCACCCTGCCCGGCTCTGTCTCTGCCCAGGCCCTGACCCCTCCCGCCGAC CCCCCGAGGTACACTTTTGCACCAAGCGCCTCCCTCAACAAGACGGCCCGGCCCTTCGGG GCACCCCCACCTACTGACAGCACCCTGCGGCAGAATGGGTATGTCAGCCCCTGCCCATCC ACTCCAACCTCTGCACACTGTCTGGTCCTTTCACAAGCACACACACAAGCTGCCTGCTAC CGCTCAGTCTGTGCCGGACCCCAGCCCCTTAACCGTGTGGCAGCAACCCCTGGCGGCCGG GTGGGGCTACTGCTCTTCCACAGGCTCTGCCCTGCTGAGCAGCCTGGGGTTAGCCTGTGC TGTGGGCCAGCTGAGTCTCACAAACTCGTTGCTACCTTGC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Pdlim7 (ENSMUSG00000021493)
Transcript ID	ENSMUST00000153426

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 58 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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