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Target CDS Information

Gene Symbol (Gene ID) Asnsd1 (ENSMUSG00000026095)
Cross Reference
EMBL AC153650
GO GO:0003674, GO:0004066, GO:0005575, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Asnsd1-004
OTTP OTTMUSP00000024131
OTTT OTTMUST00000051335
UniParc UPI0000F2206B
Uniprot/SPTREMBL D3Z0F1
Vega_transcript Asnsd1-004, OTTMUST00000051335
Vega_translation 179291, OTTMUSP00000024131
Definition protein_id:ENSMUSP00000120873
translation:
MCGICCSVSFSIEHFSKELKEDLLHNLRRRGPNSSRQLLKSAVNYQCLFSGHVLHLRGVL
TIQPVEDEHGNVFLWN

Chromosome 1
Length
Position(start - end)
227
53,348,238 - 53,348,466
Orient to Chromosome minus
Link Location : (1:53348238-53348466)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Asnsd1 (ENSMUSG00000026095)
Transcript ID ENSMUST00000154402
Reports
substitution
cSNPs6
Insertion11
Deletion11
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num2
synonymous substitutions 53348332 (p.Tyr45Tyr), 53348353 (p.Leu38Leu), 53348368 (p.Asn33Asn), 53348401 (p.Asp22Asp),
non-synonymous substitutions 53348360 (p.Arg36Lys), 53348433 (p.Ile12Val),
B6 transcript
(ENSMUST00000154402)
MCGICCSVSFSIEHFSKELKEDLLHNLRRRGPNSSRQLLKSAVNYQCLFSGHVLHLRGVL
TIQPVEDEHGNVFLWN
MSMv4 transcript
MCGICCSVSFSVEHFSKELKEDLLHNLRRRGPNSSKQLLKSAVNYQCLFSGHVLHLRGVL
TIQPVEDEHGNVFLWN
homology97.37 (76 / 76)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Asnsd1 (ENSMUSG00000026095)
Transcript ID ENSMUST00000154402
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTTTAGAAGTCTGTACCTGTTCTTCCAGACTCAGGCAAAAGCTTCTTAGC
CGATTTTCTCAGCTGCCTGTTACCTTAAAATATATTCTCAACTTTAAGTGATCCTAAAAA
CATCTGTTTGGTCATCTCTTTATTATTCAACAAGAGAAAGGAGCACCCTAGCAAATTAAT
TTTTTTCTATACCTTTAGGATAGGATTTCATAAATAACTCAGGCCAGCCTCAGATATTAT
TGCTTAGGCATTACTTGAATAATTCTCTTGCCTAATAGCCAGGATTTCAGGGAGGCAACC
CCATACCGGAACTAGTCCTAACTTCCAGTTACAGACGAAAATCTTTAAACGTGTAGAGTG
GAAGGGTGTGGGTATAGTCTTTTCAGATATTAAACATTCCTAAATTCTGTATTTTTTCTG
TCCTATATGATATCTTCAGTACATTGCCTAATTCCCGCTGTACCACAGTGTACTGTGGTG
TCACCTAAAGTGACACCTGTCATTCCTGTAATGAGCATAAAAACACTGTACAAGCAGACT
TGAATCTCAAGGAAAGCGTACTCAATATGGCTTTGTAGGTTATTAGTACAGCTCTCAGGA
CTTAATAGACTATTTGCCTAGCTTAACGATACCAGCAATATGCAGTCCTTAATACTTGAA
ATAGAATGATACAGTGGTGGAAAATCATGTTGGATCAGTGCAGCTAGGGCATTCAGTACC
ATAGTACCATTTCATTTGTTTTATCCAAATGTCTGGCTGTCATCTAGTGCATACATCATA
AAACCATTGGTTGTTGGTAAAGAGGAGAACCCACATTCATTTTATTTCTCTCTTTTTGTC
TACAGCAAGACCTTATAAAACTAAAAGATTGGGTTTTTGTTGTTTTCGGGGGAGGTTTTG
TTTGTTTTTGGTTCTTTTGTTTGGTTGTTTTTTGTTTTTTTCAATACAGGGTTTCTCTGT
GTAGCTCTGGCTGTCACAGAACTCAGTCTGTAGACCAGGCTGGCCTCGAA
1 EXON 1 53,350,880 53,351,275 - - 396
CTCAGAAATCTGCCTGCCTCTGCCTCTCAAGTGCTGAGATTAAAGGCGTGCGCCACCACT
GCCTGGCTTAAAAGATTGGTATTAATTTGGGTAGGCAGTGGCTCACCCTGGTTAAAGATG
TGAGCTGTGGTAACTGGCCCCTGGCAAGCCTATGCTTCTCCTTCTCAAGCTGTCTTCTAC
TGATTCCAGACCGAGTGCTGTTGATTTGTTCAGTGTCCATTTAGACAGGCAGTCCATTAT
AGCTCCCAACCCCATCTTTAGTTTTAAAGCAGTGACTTAAAATGTTCTCGCTAAATATAC
TTTGAAATCTTCCACTTTAGATTTTTTTCTTTACTTTAATAGATTAAAGAACAGAAAATT
ATTGTGGATGAACTTTCTAATCTGAAGAAGAATCGG
INTRON 1 - 2 53,350,063 53,350,879 817
GTGAGTTGCTGTGGAAATCTGAATA..........CTGATCTTGTCAATTTCGTTTGCAG
2 EXON 2 53,349,987 53,350,062 - - 76
AAAGTATACAAGCAGCAACAGAATAGCAACATATTCTTTCTTGAAGATCGAACAAAAATC
TTTTCTGAAAGCAAAA
INTRON 2 - 3 53,348,559 53,349,986 1,428
GTGAGTGGTGGTCGTCTTGGTTGTT..........ATTTTTTCTCACTTCCTCCTAACAG
3 EXON 3 53,348,238 53,348,558 - - 321
ATACATTAGACGAACTAAAAAAAGAATACCAAGCATTAGAAACCTCCGAGACAACCAAAG
TCAAGACACAGTCAACCTGACTTCACATAACCATGTGTGGCATTTGCTGTTCTGTAAGCT
TCTCTGTTGAACACTTCAGTAAAGAGTTAAAAGAGGACTTGCTGCATAATCTTAGACGGC
GGGGCCCCAATAGCAGCAAGCAGTTATTAAAATCTGCTGTTAACTACCAGTGTTTATTTT
CTGGTCATGTTCTTCATTTAAGAGGTGTTTTGACTATCCAACCTGTAGAAGATGAACATG
GCAATGTGTTCTTATGGAATG
3' upstream sequence
GAGAAGTTTTTAATGGAGTAAAGGTTAAAGCAGAAGATAATGACACCCAGGTTATGTTCA
ATAGCCTTTCTGCCTGTAAGAATGAGTCTGAAATTTTGCTGCTCTTCTCTAAAGTGCAAG
GTCCATGGTCGTTTATCTATTATCAGGCCTCTAGCCATCACTTATGGTTTGGTAGGGACT
TTTTTGGTCGGCGTAGCTTGCTTTGGCAGTTTAGTAATCTGGGCAAGAGTTTCTGCCTTT
CGTCAGTTGGTGCCCAGGTATCTGGAGTTGCAGACCAGTGGCAAGAAGTTCCAGCATCTG
GAATTTTCCAGATTGATCTCAATTCTGCTGCTGTTTCCAGATCTGTGATCTTAAAATTAT
ATCCTTGGAGATACATTTCTAAGGAGAATATTGCCGAAGAATGTGGTAATGACCTGACTC
AGACTCCAGCAGGATTGCCAGAGTTTGTATCAGTGGTAATAAATGAAGCCAACCTGTACC
TCTCAAAACCTGTCGTTCCCTTAAATAAGAAGCTGCCTGAGAGTCCATTGGAAATCCAAT
GTAGAAACAGTTCTAGCACTTCAGGTACAAGAGAGACACTTGAGGTATTTCTTACAGATG
AACACACAAAAAAAATAGTTCAGCAGTTCATTGCCATCCTCAATGTTTCAGTCAAGAGAC
GCATCTTATGTTTAGCTAGGGAAGAAAACCTGGCATCAAAGGAAGTTTTAAAAACCTGCA
GTTCGAAAGCAAACATTGCGATCCTGTTTTCTGGAGGTGTTGATTCTATGGTGATTGCAG
CCCTTGCTGATCGTCATATTCCTTTAGATGAGCCAATTGATCTTCTGAATGTGGCTTTTG
TGCCTAAACAAAAAACAGGGCTACCTATTCCTAACATAGAAAGAAAACAGCAGAACCACC
ATGAGATCCCTTCTGAAGAGTCCTCTCAGAGTACTGCTGCGGATGAGGGGCCAGGTGAGG
CTGAGGTACCAGACCGAGTCACAGGAAAAGCAGGACTAAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Asnsd1 (ENSMUSG00000026095)
Transcript ID ENSMUST00000154402
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 76 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information