MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Shc1 (ENSMUSG00000042626)

Cross Reference

EMBL	AC171273
GO	GO:0000165, GO:0000187, GO:0001525, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Shc1-006
OTTP	OTTMUSP00000024851
OTTT	OTTMUST00000052408
UniParc	UPI0000F22271
Uniprot/SPTREMBL	D3YXZ9
Vega_transcript	OTTMUST00000052408, Shc1-006
Vega_translation	187722, OTTMUSP00000024851

Definition

protein_id:ENSMUSP00000123635
translation:

MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCV
EVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKIIANHHMQSISFASGGDP

Chromosome

3

Length
Position(start - end)

2,062
89,422,181 - 89,424,244

Orient to Chromosome

plus

Link

Location : (3:89422181-89424244)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Shc1 (ENSMUSG00000042626)
Transcript ID	ENSMUST00000154791

Reports
substitution
cSNPs	1
Insertion	5
Deletion	8
SNPs	-1kb 89413840(c.-8341A>G), 89413993(c.-8188A>G), 89414372(c.-7809G>A), 89414442(c.-7739C>T), 89414594(c.-7587C>A), 89414700(c.-7481T>C), 89414701(c.-7480C>T), 89415690(c.-6491G>A), 89415695(c.-6486C>T), 89415698(c.-6483G>A), 89415836(c.-6345G>A), 89415841(c.-6340G>A), 89415842(c.-6339C>A), 89416908(c.-5273G>A), 89417351(c.-4830A>G), 89417435(c.-4746A>G), 89417623(c.-4558C>A), 89418190(c.-3991A>G), 5'UTR CDS 89423556(c.285G>A), 3'UTR 89418613(c.-100G>A), 89418617(c.-96G>A), INTRON 89419175(c.-4+466T>C), 89419435(c.-4+726A>G), 89419481(c.-4+772C>T), 89419529(c.-4+820T>G), 89419574(c.-4+865T>C), 89419813(c.-4+1104T>C), 89419865(c.-4+1156C>T), 89420346(c.-4+1637T>C), 89420362(c.-4+1653T>A), 89420363(c.-4+1654T>C), 89420837(c.-3-1341T>A), 89420871(c.-3-1307G>A), 89420895(c.-3-1283C>T), 89421661(c.-3-517C>G), 89422438(c.165+93C>T), 89423635(c.300+64T>C), 89423693(c.300+122T>C), 89423894(c.301-296T>C), +1kb 89424866(c.622A>G), 89425765(c.1521G>A), 89426009(c.1765C>T), 89426656(c.2412C>T), 89427121(c.2877T>C), 89427300(c.3056C>T), 89427988(c.3744A>T), 89428012(c.3768C>T), 89428084(c.3840C>A), 89428287(c.4043T>C), 89428481(c.4237T>C), 89428635(c.4391G>C), 89428712(c.4468C>T), 89428846(c.4602A>G), 89429088(c.*4844T>A),
Insertions	-1kb 89418067 (c.-4115_-4114dupCC), 5'UTR CDS 3'UTR INTRON 89424159 (c.301-27dupC), +1kb 89425675 (c.1431_1432insGTGTGT), 89426204 (c.1960_1961insTTTTTTGTTT), 89429156 (c.4912_4913insC),
Deletions	-1kb 89417274 (c.-4906_-4904delAAA), 89418118 (c.-4062_-4061delCT), 89418122 (c.-4058_-4057delCT), 5'UTR CDS 3'UTR INTRON +1kb 89424737 (c.494_495delCT), 89426919 (c.2676delG), 89427806 (c.3563_3567delGTTTT), 89428588 (c.4345delA), 89428715 (c.*4472delC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	89423556 (p.Ala95Ala),
non-synonymous substitutions
B6 transcript (ENSMUST00000154791)	MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCV EVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKIIANHHMQSISFASGGDP
MSMv4 transcript	MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCV EVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKIIANHHMQSISFASGGDP
homology	100.00 (118 / 118)

Exon Detail Report

Gene Symbol (Gene ID)	Shc1 (ENSMUSG00000042626)
Transcript ID	ENSMUST00000154791


..........CTTGAAACCTCTATGCGCGCCATGAATGATCAAGTATTTGAAAGGTATCT
ACACACGGCCACAGTCTTCATGCCACTCCAAGTCCTGTAAAAGCCTATCTAAAACAAGGC
TGACAACTACTCATCTTTTTTATAAACTAAAAACCACCAACACTGAGGCTCTCTTAGAAC
CGTCCTTTCATCAAGAGCATGAAACTTTCAGTTCTGCACGGGCTACCTTCTTTCTCCCAG
CAGACTTTGAGATTTCAGTAACGCGAGCAGTTCCTATTAGGGAAATCGCCACAACAAAGT
TGCTTTAGTGATGTGAATTCCCAGAGGTAAAACTGATCAGAGCTACAAGACGCTTCAATT
TAACAGCCGGCCAACTCTAAGTTCCCTTTCATTGTTTTACATCCTCCGTCCACCTTTTGC
GCATGTGCTTTGCTGCTGTACCCAATCCCACCCCCACCCCACTCCCCGGTAATTCCTTGC
GCACGCGCCCGTTCTACACTGTCCCCCGCCCCCATCCCCCGCCTCCCACTCCGGCCTAGG
TAACTAACTCCTCGCGTGCTCTCTTTTGTCTGTAGTCCCCGCGCCGGCACTAACCGGTAT
TCGAACTCCTCGTCGTCGTATTTGTCCGAGTAGTAGATTTGTTTGTGGGACATGATTGCT
CTGTCCGAGGGCGCTCAGCCCCGCGCCGCAGGCCTCCAGACAACTCCCAGCAGCACGCGC
TCCCACCCTCTTTGGCCTCGCTTTCAAACACACCGCCCGCACTTCCTATTGGTCTCTGCG
GCCGAAGGCGGGACAGCTCCATTTTGAAGTCCTCGATTGGCTTGCTTTGGCGTCTCTTCA
AGTCGTAAATGGAGTGCTGTGCTCAGGTTTCTGAAGAATGAGCTGGGTCAAACTAGGATT
CTCATTGGCTCTCACTGCGCCCCTTGAGCCTGCTGGCGCAGCCATTGGCCAACTTTGGAA
AGCAGACGGGTAAAGGAGGGACAGCGAGGTAGGGGGTCAGGGGTTAGTGA
GGCCGGAAGTGAGTGTAATAAAGTTTGTCTGGGGAGGCCCAGACTGAGGTGAAAGTTGGGGCGGTGACTTAAGCAGACAGTTGCGTGATCCGGAACCAGATCGGCCCGCGGTGCGGTGCGGAGACTCCATGAGACCCTG
GTAAGTCTAGACTTTCTTTCTGTGG..........CTCAGGCCTCTTGCCCCTCCTCCAG
GACATGAACAAGCTGAGTGGAGGCGGCGGGCGCAGGACTCGGGTAGAAGGGGGCCAGCTGGGGGGCGAGGAGTGGACCAGACACGGGAGCTTTGTCAATAAGCCCACACGAGGCTGGCTGCATCCCAACGACAAAGTCATGGGACCTGGGGTTTCCTACTTGGTTCGG
GTGAGTGCATACCCCCCTCCCACTC..........CCATTCTTCCCTCCTTCCCCTACAG
TACATGGGCTGTGTGGAGGTCTTACAGTCAATGCGAGCCCTTGACTTCAATACCCGGACTCAGGTCACCAG
GTTAGTGGGAAGGCGGGTATATTGC..........GGTCTGAGTACTCCTGTTTCTCCAG
GGAGGCCATCAGTTTGGTGTGTGAAGCTGTGCCTGGTGCCAAAGGGGCAACAAGGAGGAGAAAG
GTATATGTGGTGGTTGGGGCTGGGT..........CCTTCTCCATCCCCACCCTCATCAG
ATCATTGCCAACCATCACATGCAATCTATCTCTTTCGCGTCCGGTGGGGATCCGG
TGAGTTGGGGACCAGAGGAAAGACTGGGGTGGGGAAGAAGAGACATGGGGCTAGAAAGAT
GCTTGCTAGAGGCTGAGTGTGGTGGCACACACTGATCCCAGCACTCACGGGACAGGTGAC
TCTCTTGAGTTCCAGGACAGCCAGGGCCATGCAGAGAAATCCTTGAAAAACCAAAAGAGG
GAGGGAGAGAGAAGATACTGGCTAAAGAAGTAGGGTGCAAGGGTTGTGAAATGTCTGAAA
GGGACAGAGTCTTAGTGGATCAGGAGTTGTAAACTCTAGCTAACTGGTCTCCTGAATCTA
CCCTCTCCAGGACACAGCTGAGTATGTTGCCTATGTTGCCAAAGACCCTGTGAATCAGAG
AGGTGAGGCTTGCGGGCAGCACTGGGTGGGGCCAGTTATCTGAAAAGCAGTTACACTTGA
TAGGGTTCCCTTGCTGGGAGGGACTTGGGTGGGGGCTCCCTCCCACAGGTCATGCCAGCC
CCCTGCCTCAGAGCTCACTGGTGGTCTCCACTGTGTCCCAGCCTGCCATATCCTGGAGTG
TCCTGAAGGGCTTGCTCAGGATGTCATCAGCACCATCGGGCAGGCCTTTGAGTTGCGCTT
CAAACAGTATCTCAGGAATCCGCCGAAGCTGGTCACCCCCCATGACAGGTGAGCTGGTGG
GAGAGGGCGAGGCAGGAAGTGTCTTCCCATGCTTGAGTTCCAAGGGGTTCAGAAAAGGTA
ATGACCTGTGTGACCCTTTGTCCCTCCTCTGCTGTGTCAGCTCTCCAGTGGCTCATCAAG
AGACCTGAGGGCCATGCCTGCTGCAGGGACAGTTTCTTCCTTTTGTTTGCCTAGGGTGGA
GTTACAGCCCAGCACCTCCCACTAGACTGCTTTTTCTGGCTGAATGAACATTGAATTCTC
AAGTTGTTCATTTTTGGCCGATCCCTGTGTTCTTGTACACTTTCATTTTTCTTAAAGATT
TATTTTTATTTTATCATATGTGTAATTTACTGCATGTATA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Shc1 (ENSMUSG00000042626)
Transcript ID	ENSMUST00000154791

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 118 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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