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Target CDS Information

Gene Symbol (Gene ID) Mgat4a (ENSMUSG00000026110)
Cross Reference
CCDS CCDS69882.1
EMBL AB053217, AB053225, AK163327
Fantom B020014J19
GO GO:0000139, GO:0006487, GO:0008375, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Mgat4a-002
OTTP OTTMUSP00000046206
OTTT OTTMUST00000085524
protein_id BAC55018.1, BAC55085.1, BAE37301.1
Reactome R-MMU-392499, R-MMU-446203, R-MMU-597592, ...show all
RefSeq_mRNA NM_001290801.1
RefSeq_mRNA_predicted XM_006496025
RefSeq_peptide NP_001277730
UCSC uc007aru.2
UniParc UPI00001ED051
Uniprot/SWISSPROT Q812G0
Vega_transcript Mgat4a-002, OTTMUST00000085524
Vega_translation 179032, OTTMUSP00000046206
Definition protein_id:ENSMUSP00000121181
translation:
MRLRNGTVATALVFVTSFLTLSWYTTWQNGKEKLIAYQREFLALKERLRVAEHRISQRSS
ELNTIVQQFRRAGAETNGNNTIKLLKELTSKKSLRVPSIYYHLPHLLQNERSLQPAVQIG
SGRTGVSIVMGIPTVKREVKSYLVETLHSLIDNLYPEEKLDCVIVVFIGETDLDYVHSVV
ANLEKEFSREISSGLLEIISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYA
QEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDLALVV
EFILMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLS
GKIQKLTDKDYMKPLLLKVHVNPPAEVSTSLKVYQGHTLEKTYMGEDFFWAITPTAGDYI
LFKFDKPVNVESYLFHSGNQEHPGDILLNTTVDVLPLKSDSLEISKETKDKRLEDGYFRI
GKFEYGVAEGIVDPGLNPISAFRLSVIQNSAVWAILNEIHIKKVTS

Chromosome 1
Length
Position(start - end)
91,472
37,444,659 - 37,536,132
Orient to Chromosome minus
Link Location : (1:37444659-37536132)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mgat4a (ENSMUSG00000026110)
Transcript ID ENSMUST00000154819
Reports
substitution
cSNPs7
Insertion79
Deletion107
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num1
synonymous substitutions 37452347 (p.Val393Val), 37452561 (p.Gly354Gly), 37490284 (p.Cys162Cys), 37498616 (p.Gly73Gly), 37498649 (p.Leu62Leu), 37498733 (p.Leu34Leu),
non-synonymous substitutions 37466565 (p.His177Asn),
B6 transcript
(ENSMUST00000154819)
MRLRNGTVATALVFVTSFLTLSWYTTWQNGKEKLIAYQREFLALKERLRVAEHRISQRSS
ELNTIVQQFRRAGAETNGNNTIKLLKELTSKKSLRVPSIYYHLPHLLQNERSLQPAVQIG
SGRTGVSIVMGIPTVKREVKSYLVETLHSLIDNLYPEEKLDCVIVVFIGETDLDYVHSVV
ANLEKEFSREISSGLLEIISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYA
QEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDLALVV
EFILMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLS
GKIQKLTDKDYMKPLLLKVHVNPPAEVSTSLKVYQGHTLEKTYMGEDFFWAITPTAGDYI
LFKFDKPVNVESYLFHSGNQEHPGDILLNTTVDVLPLKSDSLEISKETKDKRLEDGYFRI
GKFEYGVAEGIVDPGLNPISAFRLSVIQNSAVWAILNEIHIKKVTS*
MSMv4 transcript
MRLRNGTVATALVFVTSFLTLSWYTTWQNGKEKLIAYQREFLALKERLRVAEHRISQRSS
ELNTIVQQFRRAGAETNGNNTIKLLKELTSKKSLRVPSIYYHLPHLLQNERSLQPAVQIG
SGRTGVSIVMGIPTVKREVKSYLVETLHSLIDNLYPEEKLDCVIVVFIGETDLDYVNSVV
ANLEKEFSREISSGLLEIISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYA
QEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDLALVV
EFILMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLS
GKIQKLTDKDYMKPLLLKVHVNPPAEVSTSLKVYQGHTLEKTYMGEDFFWAITPTAGDYI
LFKFDKPVNVESYLFHSGNQEHPGDILLNTTVDVLPLKSDSLEISKETKDKRLEDGYFRI
GKFEYGVAEGIVDPGLNPISAFRLSVIQNSAVWAILNEIHIKKVTS*
homology99.81 (527 / 527)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mgat4a (ENSMUSG00000026110)
Transcript ID ENSMUST00000154819
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GGAGGTACAGTAACTCACCCCACTAGAGGCTCATTTACTGTAGCACCACA
GGAAGTGGTGCTACCCCTTGGTGCCACTAGAAATCAACGCTTGCCTGACAAGCCCCTAGG
GGGTGAGACCAGTTATGTCTAGCGTGGACCACGCAGGGGCTGGCTCATCTGTTGGCTTAT
TTTTCTCTTTGATACAGTTGGTATTTATTGAAGGCCTATCTTGTGCTGGGCATTCTACTT
AGCAACCTCATGCCTTTCCAGTTCTAAAGAATTTTAGTTAGCTGAATAGCGAGCGCGGTC
CTCCTCATTTCTTGAGCATCATAACCCAATGGGGTAGTCTGTGGCCGAGAGAGAGTGGGC
TAGATCACTGCCTCTTCTGAACGTGTAAATATTTCCAGCTGTCTTTCTAAAACTCAAGAT
GAGGATATTGATAATTGTAAGGATTTTGTGGTATGTGGGATACCAGAGTCCGTTGCTTTC
TTATTTCATAGATGAAACTTGGAGGCGTGGAAGAAAAGAGGCACGTCAGGGCATTTCAGT
AATGCCATAAGTCAGCACTGGGCAGCGGACTCTTCAAACTATTGCAGTTGTACATTCCCT
TATTTTTATTTATTTTCTTAACCATTGCTTGCTCTTATGCAGCGGAATAATAACTCGGGG
AGAGGGGGATAAAACTTAAGACTCAGTTGTTAGGGACCCCTTTGGGAATCTGTGAGCCCC
ACAACTTCTCCCTTTAAATGAGCAACCATAAATTTTTATGTTTTCCATAGACAGAACCAG
CCAGGAAGGAAGGAATACAGTTTGAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGAA
AAAGACCCTTATAATTCTGCTATAAGAAATGAATCATTTTAATATGGGGGTGGTCTTCAT
AAGTACAGTTTAGGCTTGACAAGAGTCTGCCTTTGACACTGAATAATAAATGGAGAAACC
TCTGGTTTGTATTATTTAGTGAGTTTTCCTTTCGTTTCTTTCCCTGACAG
1 EXON 1 37,536,039 37,536,404 - 1 366
GAAGAAGAAAAAGAAGCATCCCTTAGCCCCCAGCCTCTGAAAACTGCGAAGACAATCTGG
AATAGCAATACCCACTGTTGCTTTGCTGCCTGACGCCTTCTGCCCAGCATCTGAAGTGAA
CCTCAATCATCAATTCATCAATTGCTTTTTTTTTTTTTTTTTTTTTTTTGGCCCGGGACC
AAGGCGTTCTGAATTCTGTTGATTTGAGGCTGGAGAGAGACCGGTCTTGCTTGTCATCGC
CAACTTGCTAACCAGTGTGATGGTGAAATGAGATGAGGCTCCGAAATGGAACTGTGGCCA
CTGCGCTGGTATTTGTCACGTCCTTCCTTACCCTATCCTGGTATACCACGTGGCAAAATG
GGAAAG
INTRON 1 - 2 37,498,741 37,536,038 37,298
GTAAGGAGGAGGTCTCTGAACCACT..........GTTTCTTTTTTCATTTTTCCTCTAG
2 EXON 2 37,498,600 37,498,740 1 1 141
AAAAACTCATTGCTTATCAACGAGAATTCCTTGCTCTAAAAGAGCGTCTTCGAGTGGCCG
AGCATAGGATATCTCAGCGCTCCTCGGAGCTGAACACCATTGTCCAGCAGTTCCGCAGAG
CTGGGGCAGAGACTAATGGAA
INTRON 2 - 3 37,496,014 37,498,599 2,586
GTAAGACAGCTCTGAGTACAATCTC..........CTTAAATTGTCTTTCTGTGTTTCAG
3 EXON 3 37,495,873 37,496,013 1 1 141
ATAATACCATAAAGCTTCTAAAAGAGTTGACAAGCAAAAAATCACTTCGAGTGCCAAGTA
TTTATTATCATTTGCCTCATCTATTGCAAAATGAAAGAAGCCTTCAGCCCGCCGTACAGA
TTGGCAGTGGAAGAACGGGAG
INTRON 3 - 4 37,490,394 37,495,872 5,479
GTGTGTTCACTGTGCGCCTGCTATT..........CATAATTACTCTATTTTTTTTTCAG
4 EXON 4 37,490,260 37,490,393 1 0 134
TTTCAATAGTTATGGGAATTCCTACTGTGAAGAGAGAAGTTAAATCTTACCTCGTAGAAA
CCCTTCACTCCCTTATTGATAATCTGTATCCTGAAGAGAAGCTGGACTGCGTTATAGTCG
TCTTCATAGGAGAG
INTRON 4 - 5 37,466,584 37,490,259 23,676
GTAATTCCTTGTTATTTCTTTCATC..........AACCATACTTTTCTCTCTCTCCCAG
5 EXON 5 37,466,537 37,466,583 0 2 47
ACAGATCTTGATTATGTTAACAGCGTTGTTGCCAACCTGGAGAAAGA
INTRON 5 - 6 37,464,535 37,466,536 2,002
GTAAGTTTTCTGAAGTGAGGAAGTG..........ATACAGCTAACCTTTCTCTTGGTAG
6 EXON 6 37,464,421 37,464,534 2 2 114
ATTTTCTAGAGAAATTAGTTCTGGCCTGCTGGAAATAATCTCTCCTCCTGAAAGCTATTA
CCCCGACTTGACAAACCTGAAGGAGACGTTCGGAGACTCCAAGGAAAGAGTGAG
INTRON 6 - 7 37,462,968 37,464,420 1,453
GTGAGCGACAGAGATGCACACTTAG..........CATTCTCCGGTGCTGTTCATTTCAG
7 EXON 7 37,462,892 37,462,967 2 0 76
ATGGAGAACCAAGCAAAACCTGGATTACTGTTTTCTGATGATGTATGCTCAGGAGAAGGG
CATCTACTACATTCAG
INTRON 7 - 8 37,456,705 37,462,891 6,187
GTGAGAGTCAGAGGCTTCTCAGGGT..........ATGATGGTTCAATTTTCTTTTCTAG
8 EXON 8 37,456,590 37,456,704 0 1 115
CTTGAAGACGATATTATTGTCAAACAAAACTATTTTAATACCATAAAGAATTTTGCACTT
CAACTTTCTTCGGAAGAATGGATGATTCTAGAGTTTTCCCAGCTTGGCTTCATTG
INTRON 8 - 9 37,454,875 37,456,589 1,715
GTAAGAAGAGCATTTGATGATTTAT..........GCTCTCGACTGGGATGTCTTTTCAG
9 EXON 9 37,454,744 37,454,874 1 0 131
GAAAAATGTTCCAGGCGCCGGACCTGGCGCTGGTCGTGGAGTTCATCCTCATGTTCTATA
AGGAGAAGCCCATTGACTGGCTGCTGGACCACATTCTCTGGGTGAAGGTCTGCAACCCCG
AAAAAGATGCT
INTRON 9 - 10 37,452,630 37,454,743 2,114
GTAAGTTGACTCTTCATGGGGTCCA..........AGATTTTTTTTTTTTTAATGTCTAG
10 EXON 10 37,452,522 37,452,629 0 0 108
AAACACTGCGACAGACAGAAGGCAAACCTACGAATCCGCTTCCGACCCTCCCTCTTCCAG
CACGTGGGTCTACACTCGTCTCTGTCGGGGAAGATTCAGAAACTCACG
INTRON 10 - 11 37,452,425 37,452,521 97
GTTGGTGATCTAATGTAGTTTTGCC..........TCACGGCCCATGTGTGTCCTCCTAG
11 EXON 11 37,452,231 37,452,424 0 2 194
GATAAAGATTACATGAAGCCATTGCTTCTCAAGGTCCACGTGAACCCGCCTGCAGAGGTC
TCCACCTCCCTGAAGGTATACCAAGGGCACACCCTGGAGAAGACCTACATGGGGGAAGAC
TTCTTTTGGGCCATCACCCCCACGGCTGGAGACTACATCTTGTTTAAATTTGACAAACCG
GTCAACGTGGAGAG
INTRON 11 - 12 37,450,408 37,452,230 1,823
GTCAGTGACTGGGGGATACATTTTT..........TTCATTCTTTGGTGTGTATTTCCAG
12 EXON 12 37,450,329 37,450,407 2 0 79
TTATTTGTTCCACAGCGGCAATCAAGAGCACCCAGGAGACATCCTGCTGAACACGACCGT
GGATGTTCTCCCTCTTAAG
INTRON 12 - 13 37,449,163 37,450,328 1,166
GTACGGCAGCGACTGCTGCGCTTGG..........AATTGTTGCCTTTGTTTGATTTTAG
13 EXON 13 37,449,096 37,449,162 0 1 67
AGCGACAGTTTGGAAATCAGCAAAGAAACCAAAGACAAACGATTAGAAGATGGCTATTTC
AGAATAG
INTRON 13 - 14 37,444,920 37,449,095 4,176
GTAATGTCTACTTAATAACACAGCC..........AACAAAAATATTTTCTGTCTTGAAG
14 EXON 14 37,444,807 37,444,919 1 0 113
GAAAATTTGAGTATGGTGTTGCAGAGGGAATTGTGGATCCTGGTCTAAACCCTATTTCAG
CCTTTCGACTTTCCGTTATTCAGAACTCAGCTGTTTGGGCCATTCTTAATGAG
INTRON 14 - 15 37,444,686 37,444,806 121
GTAAGAGTACATTCAGCCAGCAAAG..........TATCTTATATTTTTTTGTATTTCAG
15 EXON 15 37,443,716 37,444,685 0 - 970
ATTCATATTAAAAAAGTCACCAGTTGATCTGCTTAGAAACCAACACGTCCTTTCTTATGA
CTCTTGATTAAAGATAATTAGCGCGTCCTCTTCTGTTTGGACTTGAACACTACCTCTCCT
GAAGCCACTGTAGATGAGATGATTGTTGCCTCCACGCGGACAGGGACTCTTCCCATGGAT
AACTGCATTCATTTGAAGCTAGGCTGTCCTCCAATTTGAACTTGACACAAACGTTTTACA
ATCCTGACAGCCTGTTAACATGACTGAGACTATTTTGGTATTATACTAATACACAAGAGT
TGTACATATTGTTACATTCCTTAAAATTTGAGAAAACTGATGTTAAATACATTTTGTGAA
GGGGGTACTTTTGAACTTCACTTATTTTACTATTATAGACCCTCTTTTATAGACGATCAG
GGATATTATATATATATATATACATATATATATATATATATATATAAATATATAAATACA
CATGAAGATGTTATGAAGTTAATTTATTAGAAGCACTTAAGAAGTACATATTTTTGTGCA
GTAAAGTTTTGAATCAACACCTTTTTTTGAAGAAGCGGTTCCCCGGCTTTTTTTAAGTTC
TTTCTATATTTTTATTTGGAGATGCCGACATTATAGATCAACGCCATTTTTTCCAGTGCA
CTGCCATTCCAGATTGGTTCTAGATGGGTTTCTTAACTCGAAGTACTTTTATAATCACAG
CAATTCTGAACAAAATATTTTCAGAGGCATTTGTCATTCCTAAAAATCAAGATTTTAAAA
GACCAATGTTCTCTCGAGGGTTATATTACTGTACTGTGTATGGTGTGTAGCCACAGAAAA
CCAGTGTGACTGTCATTGTCCAGGTGGGAAGCCCCTGCCGTGTCTCCACAGACTCCTTTT
CCCGTTCATAGTTCCTTTCATGTGGGTGATGAGACTCCCTTCCCTTTTGCTCTGTCTTTA
ATCAGTAGTT
3' upstream sequence
AGACAAACTGTCTCTTTTCTCCCTGGTTGGTCCTTTTCTAGATCTGTGGTAGGTTTTGGA
GTTCAGATACTGTTTTCTGAGTAATGCTGTTGGGTGTGTCCTATTGGGTATGGGACTCGG
GGAAAGACGACCGTAGCACTTCTGTTTCCATAGCATGATTTGCTCCGCTGTGTCATGAAC
GTGGAGGTAAATGCTGTGTCCACAGAGTGTTTGTGCATCCTCACTTTGCAGTCCCAAGTA
GCGCTAGTTGGCAGAAGTGCTTTACTCTTATGATTAGGAAGGCCGAGCAACAGTTGCCAG
TCTTCTCTGGCTCTCCAGAAACTGCGTGTACAGCAGGTGTGGTGGAGGCCTAGGGCTGTG
GGAGGTCCCGGCTGGTAGCCTCCGTCGGGGGCTTTCTTAGTTGCCCAGTGTATGGGACAC
ACAGAACTGAGTGGAAGCCATTTTGTATGTTCTGCCTGGGAAAATTTAGATAAACACTAC
TGTGCATGTCAAAGCCCAGCTGAAGCTTTTCTTGGTGTTAAGTTTCCCCTCTCATTTCCT
TCAGCTTTTTAATAATTAGTACTGCATTTGGCACTTTTCCTATGCCCTGTGCCCACAAAT
AAATCCCACTATCTTCCCACACTCAAGTGTGCAGCAGCAGGATAACAGACTGTGAAACCA
TGCAGATGGGCACAGGGGCCCCGTTAGGTCTCTGCTTTCTCAGTGGTTGTGAGTTCAGAA
GGCCAAGCCTTGAAACTCCACTGGACCGTGTGAATGTCTCCTGCGTGGGTCTTTGAGCAT
ATCCACTTACAAGGCTCTACTCATCAGTCTTGCCTCTAAGGACTCTTTTAGCCAAGTCCT
TTCCTTCATTCAAGGAATTCCCCCTTTCCCCATGAGCTAGTTCCTGGTGCCTGGAACACG
CCTGAGCCTTGGCAGGCTCGGTTGGCATCTGGATTAACTAGCCAGGTTGCTCACATCTCT
CTCCTAGCGATGTCTGCCTACTATCCTGCCGTGCACTGGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Mgat4a (ENSMUSG00000026110)
Transcript ID ENSMUST00000154819
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 527 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information