MoG+ -Mouse Genome database with high added value-

Detail Map

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name	Lypla1 (ENSMUSG00000025903)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Lypla1 note : lysophospholipase 1 [Source:MGI Symbol;Acc:MGI:1344588]

name	Gm37988 (ENSMUSG00000104217)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm37988 note : predicted gene, 37988 [Source:MGI Symbol;Acc:MGI:5611216]

name	Tcea1 (ENSMUSG00000033813)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Tcea1 note : transcription elongation factor A (SII) 1 [Source:MGI Symbol;Acc:MGI:1196624]

name	Gm6104 (ENSMUSG00000062588)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm6104 note : predicted gene 6104 [Source:MGI Symbol;Acc:MGI:3648587]

name	Lypla1 (ENSMUSG00000025903)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000134384

name	Lypla1 (ENSMUSG00000025903)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000027036

name	Lypla1 (ENSMUSG00000025903)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000150971

name	Lypla1 (ENSMUSG00000025903)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119612

name	Lypla1 (ENSMUSG00000025903)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000137887

name	Lypla1 (ENSMUSG00000025903)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000115529

name	Lypla1 (ENSMUSG00000025903)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000131119

name	Gm37988 (ENSMUSG00000104217)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000155020

name	Tcea1 (ENSMUSG00000033813)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000081551

name	Tcea1 (ENSMUSG00000033813)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000165720

name	Lypla1 (ENSMUSG00000025903) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Lypla1-002 Vega_transcript:OTTMUST00000051163 Uniprot/SPTREMBL:J3QP56 UCSC:uc007afg.1 EMBL:AC102311 EMBL:CH466536 GO:GO:0002084 GO:GO:0005739 GO:GO:0005829 GO:GO:0008474 GO:GO:0016298 GO:GO:0042997 GO:GO:0070062 MGI_trans_name:Lypla1-002 Vega_translation:178609 Vega_translation:OTTMUSP00000062519 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0043226 protein_id:EDL14249.1 OTTP:OTTMUSP00000062519 OTTT:OTTMUST00000051163 UniParc:UPI000154A0DE
definition	note : transcript_id=ENSMUST00000134384 protein_id : ENSMUSP00000137104 translation : MCGNNMSAPMPAVVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMPVTLNMNMAMPSWFDIVGLSPDSQEDESGIKQAAETVKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFSQGPINSANRDISVLQCHGDCDPLVPLMFGSLTVERLKALINPANVTFKIYEGMMHSSCQQIGSVLASFVST

name	Lypla1 (ENSMUSG00000025903) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14806.1 Uniprot/SWISSPROT:P97823 RefSeq_peptide:NP_032892 RefSeq_mRNA:NM_008866.2 RefSeq_mRNA_predicted:XM_006495472.2 RefSeq_peptide_predicted:XP_006495535.1 Vega_transcript:Lypla1-001 Vega_transcript:OTTMUST00000051162 UCSC:uc007afh.1 Fantom:0610025N20 Fantom:C820014D19 Fantom:I1C0043L13 Fantom:I920067K07 ChEMBL:CHEMBL3259479 EMBL:AK002674 EMBL:AK050549 EMBL:AK146874 EMBL:AK167231 EMBL:BC013536 EMBL:BC052848 EMBL:U89352 GO:GO:0002084 GO:GO:0005739 GO:GO:0005829 GO:GO:0006631 GO:GO:0008474 GO:GO:0008474 GO:GO:0016298 GO:GO:0016298 GO:GO:0042997 GO:GO:0070062 GO:GO:0070062 MGI_trans_name:Lypla1-001 Vega_translation:178610 Vega_translation:OTTMUSP00000024030 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006464 goslim_goa:GO:0006629 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0043226 goslim_goa:GO:0044281 protein_id:AAB48627.1 protein_id:AAH13536.1 protein_id:AAH52848.1 protein_id:BAB22276.1 protein_id:BAC34318.1 protein_id:BAE27497.1 protein_id:BAE39355.1 OTTP:OTTMUSP00000024030 OTTT:OTTMUST00000051162 Reactome:R-MMU-1430728 Reactome:R-MMU-202131 Reactome:R-MMU-203615 Reactome:R-MMU-203765 UniParc:UPI0000022735
definition	note : transcript_id=ENSMUST00000027036 protein_id : ENSMUSP00000027036 translation : MCGNNMSAPMPAVVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMPVTLNMNMAMPSWFDIVGLSPDSQEDESGIKQAAETVKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFSQGPINSANRDISVLQCHGDCDPLVPLMFGSLTVERLKALINPANVTFKIYEGMMHSSCQQEMMDVKHFIDKLLPPID

name	Lypla1 (ENSMUSG00000025903) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:P97823 Vega_transcript:Lypla1-003 Vega_transcript:OTTMUST00000051164 UCSC:uc007afg.1 Fantom:0610025N20 Fantom:C820014D19 Fantom:I1C0043L13 Fantom:I920067K07 ChEMBL:CHEMBL3259479 EMBL:AK002674 EMBL:AK050549 EMBL:AK146874 EMBL:AK167231 EMBL:BC013536 EMBL:BC052848 EMBL:U89352 GO:GO:0002084 GO:GO:0005739 GO:GO:0005829 GO:GO:0006631 GO:GO:0008474 GO:GO:0016298 GO:GO:0042997 GO:GO:0070062 MGI_trans_name:Lypla1-003 Vega_translation:178611 Vega_translation:OTTMUSP00000062522 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006464 goslim_goa:GO:0006629 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0043226 goslim_goa:GO:0044281 protein_id:AAB48627.1 protein_id:AAH13536.1 protein_id:AAH52848.1 protein_id:BAB22276.1 protein_id:BAC34318.1 protein_id:BAE27497.1 protein_id:BAE39355.1 OTTP:OTTMUSP00000062522 OTTT:OTTMUST00000051164 Reactome:R-MMU-1430728 Reactome:R-MMU-202131 Reactome:R-MMU-203615 Reactome:R-MMU-203765 UniParc:UPI0000232DE2
definition	note : transcript_id=ENSMUST00000150971 protein_id : ENSMUSP00000137248 translation : MCGNNMSAPMPAVVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMPVTLNMNMAMPSWFDIVGLSPDSQEDESGIKQAAETVKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFSQGPINSANRDISVLQCHGDCDPLVPLMFGSLTVERLKALINPANVTFKIYEGMMHSSCQQVGVSGSSE

name	Lypla1 (ENSMUSG00000025903) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Lypla1-009 Vega_transcript:OTTMUST00000051170 Uniprot/SPTREMBL:J3QQ63 UCSC:uc007afh.1 EMBL:AC102311 GO:GO:0002084 GO:GO:0005739 GO:GO:0005829 GO:GO:0008474 GO:GO:0016298 GO:GO:0042997 GO:GO:0070062 MGI_trans_name:Lypla1-009 Vega_translation:178612 Vega_translation:OTTMUSP00000062521 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0043226 OTTP:OTTMUSP00000062521 OTTT:OTTMUST00000051170 UniParc:UPI000268B569
definition	note : transcript_id=ENSMUST00000119612 protein_id : ENSMUSP00000137647 translation : MCGNNMSAPMPAVVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMPVTLNMNMAMPSWFDIVGLSPDSQEDESGIKQA

name	Lypla1 (ENSMUSG00000025903) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Lypla1-007 Vega_transcript:OTTMUST00000051168 Uniprot/SPTREMBL:D3Z269 UCSC:uc007afg.1 EMBL:AC102311 GO:GO:0002084 GO:GO:0005739 GO:GO:0005829 GO:GO:0008474 GO:GO:0016298 GO:GO:0042997 GO:GO:0070062 MGI_trans_name:Lypla1-007 Vega_translation:178613 Vega_translation:OTTMUSP00000024032 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0043226 OTTP:OTTMUSP00000024032 OTTT:OTTMUST00000051168 UniParc:UPI0000F2203C
definition	note : transcript_id=ENSMUST00000137887 protein_id : ENSMUSP00000119456 translation : MCGNNMSAPMPAVVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAFDIVGLSPDSQEDESGIKQAAETVKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFSQGPIN

name	Lypla1 (ENSMUSG00000025903) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Lypla1-008 Vega_transcript:OTTMUST00000051169 Uniprot/SPTREMBL:D3Z111 UCSC:uc007afh.1 EMBL:AC102311 GO:GO:0002084 GO:GO:0005739 GO:GO:0005829 GO:GO:0008474 GO:GO:0016298 GO:GO:0042997 GO:GO:0070062 MGI_trans_name:Lypla1-008 Vega_translation:178614 Vega_translation:OTTMUSP00000024033 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0043226 OTTP:OTTMUSP00000024033 OTTT:OTTMUST00000051169 UniParc:UPI0000F2203E
definition	note : transcript_id=ENSMUST00000115529 protein_id : ENSMUSP00000111191 translation : MCGNNMSAPMPAVVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMPVTLNMNMAMPSWFDIVGLSPDSQEDESGIKQAAETVKALIDQEVKNGIPSNRIILGGFSQGPINSANRDISVLQCHGDCDPLVPLMFGSLTVERLKALINPANVTFKIYEGMMHSSCQQEMMDVKHFIDKLLPPID

name	Lypla1 (ENSMUSG00000025903) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Lypla1-006 Vega_transcript:OTTMUST00000051167 Uniprot/SPTREMBL:D3YUG4 UCSC:uc007afg.1 EMBL:AC102311 GO:GO:0002084 GO:GO:0005739 GO:GO:0005829 GO:GO:0008474 GO:GO:0016298 GO:GO:0042997 GO:GO:0070062 MGI_trans_name:Lypla1-006 Vega_translation:178615 Vega_translation:OTTMUSP00000024031 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0005829 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0043226 OTTP:OTTMUSP00000024031 OTTT:OTTMUST00000051167 UniParc:UPI0000F2203D
definition	note : transcript_id=ENSMUST00000131119 protein_id : ENSMUSP00000118453 translation : MPVTLNMNMAMPSWFDIVGLSPDSQEDESGIKQAAETVKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFSQGPINSANRDISVLQCHGDCDPLVPLMFGSLTVERLKALINPANVTF

name	Gm37988 (ENSMUSG00000104217) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127419 Vega_transcript:RP24-426M1.3-001 Uniprot/SPTREMBL:J3QM41 Clone_based_vega_transcript:RP24-426M1.3-001 EMBL:AC102311 MGI_trans_name:Gm37988-001 Vega_translation:178616 Vega_translation:OTTMUSP00000068751 OTTP:OTTMUSP00000068751 OTTT:OTTMUST00000127419 UniParc:UPI000268B568
definition	note : transcript_id=ENSMUST00000155020 protein_id : ENSMUSP00000136108 translation : MCGNNMSAPMPAVVPAARKATAAAWMGRSLCRYQKSPHQIHLSTCPCDASHIKYEYGYAFLV

name	Tcea1 (ENSMUSG00000033813) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS35505.1 Uniprot/SWISSPROT:P10711 RefSeq_peptide:NP_001153222.1 RefSeq_peptide:NP_035671 RefSeq_mRNA:NM_001159750.1 RefSeq_mRNA:NM_011541.4 Vega_transcript:OTTMUST00000111602 Vega_transcript:Tcea1-001 Uniprot/SPTREMBL:Q3UWX7 UCSC:uc007afi.2 Fantom:7420449J21 EMBL:AK136035 EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 EMBL:D00925 EMBL:M18209 EMBL:M18210 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0006351 GO:GO:0008270 GO:GO:0030218 GO:GO:0032784 GO:GO:0045893 GO:GO:0045944 MGI_trans_name:Tcea1-001 Vega_translation:178617 Vega_translation:OTTMUSP00000062523 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0042592 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0048856 protein_id:AAA40418.1 protein_id:AAA40419.1 protein_id:AAH06022.1 protein_id:AAH61490.1 protein_id:AAH83127.1 protein_id:BAA00768.1 protein_id:BAE22787.1 OTTP:OTTMUSP00000062523 OTTT:OTTMUST00000111602 Reactome:R-MMU-110302 Reactome:R-MMU-110304 Reactome:R-MMU-112382 Reactome:R-MMU-674695 Reactome:R-MMU-73857 Reactome:R-MMU-73885 Reactome:R-MMU-73894 Reactome:R-MMU-73937 Reactome:R-MMU-74160 Reactome:R-MMU-75955 UniParc:UPI00000278FD
definition	note : transcript_id=ENSMUST00000081551 protein_id : ENSMUSP00000080266 translation : MEDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC

name	Tcea1 (ENSMUSG00000033813) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48212.1 RefSeq_peptide:NP_001153223 RefSeq_mRNA:NM_001159751.1 RefSeq_mRNA_predicted:XM_011238366.1 RefSeq_peptide_predicted:XP_011236668.1 Vega_transcript:OTTMUST00000111603 Vega_transcript:Tcea1-002 Uniprot/SPTREMBL:E9PYD5 UCSC:uc011whu.1 EMBL:AC102311 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0005730 GO:GO:0006351 GO:GO:0008270 GO:GO:0030218 GO:GO:0032784 GO:GO:0045893 GO:GO:0045944 MGI_trans_name:Tcea1-002 Vega_translation:178618 Vega_translation:OTTMUSP00000062524 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0042592 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0048856 OTTP:OTTMUSP00000062524 OTTT:OTTMUST00000111603 UniParc:UPI0001A23060
definition	note : transcript_id=ENSMUST00000165720 protein_id : ENSMUSP00000129157 translation : MCPSVCTTFHPFASTLDLSSQLHLNLFFQTQQAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC

name
type	STS
link
xref	UniSTS_NUM:163048 UniSTS:C78292 UniSTS:RH126340 MGI:D1Ertd164e
definition	note : map_weight=1 standard_name : RH126340

name
type	misc_feature
link
xref
definition	note : contig AC102311.10 1..136304(-1)

name	Lypla1 (ENSMUSG00000025903)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000051165 Vega_transcript:OTTMUST00000051165 MGI_trans_name:Lypla1-004 OTTT:OTTMUST00000051165
definition	note : retained_intron note : transcript_id=ENSMUST00000141278

name	Gm6104 (ENSMUSG00000062588)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127359 Vega_transcript:OTTMUST00000127359 Clone_based_vega_transcript:RP24-426M1.2-001 MGI_trans_name:Gm6104-001 OTTT:OTTMUST00000127359
definition	note : processed_pseudogene note : transcript_id=ENSMUST00000078030

Reports
substitution
cSNPs	0
Insertion	70
Deletion	89
SNPs	-1kb 4803794(c.-4120A>T), 4804291(c.-3623A>C), 4804863(c.-3051C>T), 4804925(c.-2989C>A), 4804942(c.-2972C>T), 4805009(c.-2905C>T), 4805044(c.-2870A>C), 4805052(c.-2862C>A), 4805149(c.-2765C>T), 4805181(c.-2733T>A), 4805256(c.-2658G>A), 4805261(c.-2653A>G), 4805377(c.-2537T>C), 4805426(c.-2488G>T), 4805647(c.-2267G>A), 4805675(c.-2239A>G), 4805802(c.-2112C>A), 4805933(c.-1981T>A), 4806104(c.-1810G>A), 4806114(c.-1800T>C), 4806188(c.-1726G>C), 4806633(c.-1281A>T), 4806808(c.-1106T>C), 4807361(c.-553A>G), 4807532(c.-382A>G), 4807617(c.-297G>T), 4807660(c.-254A>C), 4807714(c.-200G>T), 5'UTR CDS 3'UTR 4832380(c.64C>T), 4878056(c.511C>T), INTRON 4808277(c.69+295C>G), 4808870(c.69+888T>C), 4808987(c.69+1005C>T), 4809276(c.69+1294T>C), 4810043(c.69+2061G>A), 4810066(c.69+2084T>G), 4810067(c.69+2085A>C), 4810068(c.69+2086T>A), 4810092(c.69+2110A>G), 4810541(c.69+2559G>A), 4810832(c.69+2850G>A), 4811166(c.69+3184T>C), 4812412(c.69+4430G>C), 4813640(c.69+5658C>A), 4813692(c.69+5710C>A), 4813774(c.69+5792C>T), 4813776(c.69+5794G>A), 4813842(c.69+5860G>A), 4813852(c.69+5870G>A), 4813854(c.69+5872G>A), 4813855(c.69+5873C>T), 4813972(c.69+5990C>T), 4814041(c.69+6059C>T), 4814075(c.69+6093C>T), 4814077(c.69+6095G>T), 4814127(c.69+6145C>T), 4814377(c.69+6395G>C), 4814478(c.69+6496T>C), 4815327(c.69+7345T>A), 4815512(c.69+7530C>T), 4815576(c.69+7594G>A), 4815577(c.69+7595T>C), 4815620(c.69+7638A>G), 4815634(c.69+7652T>A), 4815806(c.69+7824C>T), 4815844(c.69+7862G>A), 4819890(c.70-8694T>C), 4820123(c.70-8461T>C), 4820269(c.70-8315T>G), 4820281(c.70-8303C>T), 4820486(c.70-8098T>C), 4820521(c.70-8063A>G), 4820690(c.70-7894G>T), 4820740(c.70-7844G>A), 4820868(c.70-7716A>C), 4820932(c.70-7652T>C), 4820983(c.70-7601A>G), 4821199(c.70-7385C>T), 4821207(c.70-7377T>A), 4821582(c.70-7002A>G), 4821759(c.70-6825C>G), 4821773(c.70-6811G>C), 4822330(c.70-6254G>A), 4822399(c.70-6185C>G), 4822423(c.70-6161C>G), 4822569(c.70-6015A>G), 4822839(c.70-5745A>G), 4822843(c.70-5741G>A), 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4877924(c.482-103A>T), 4877973(c.482-54G>A), 4878009(c.482-18A>G), 4878175(c.587+43T>C), 4878304(c.587+172T>C), 4878314(c.587+182C>T), 4878365(c.587+233G>T), 4878549(c.587+417T>G), 4878589(c.587+457T>A), 4878600(c.587+468A>G), 4880998(c.587+2866A>T), 4881124(c.587+2992C>T), 4881172(c.587+3040G>A), 4881235(c.587+3103A>C), 4881820(c.587+3688A>C), 4881869(c.587+3737A>G), 4881878(c.587+3746C>T), 4881926(c.587+3794G>C), 4881933(c.587+3801T>C), 4881946(c.587+3814A>G), 4882059(c.587+3927T>C), 4882215(c.587+4083A>G), 4882308(c.587+4176T>G), 4882346(c.587+4214C>A), 4882775(c.588-3969G>A), 4882830(c.588-3914G>A), 4882864(c.588-3880T>C), 4882956(c.588-3788T>C), 4883024(c.588-3720T>C), 4883497(c.588-3247A>G), 4883534(c.588-3210C>T), 4883628(c.588-3116C>T), 4883630(c.588-3114T>G), 4883687(c.588-3057G>A), 4883763(c.588-2981G>A), 4883797(c.588-2947C>T), 4883821(c.588-2923C>T), 4884134(c.588-2610C>T), 4884314(c.588-2430C>T), 4884398(c.588-2346G>T), 4884472(c.588-2272G>A), 4884630(c.588-2114C>T), 4884669(c.588-2075A>G), 4884857(c.588-1887T>C), 4884989(c.588-1755T>C), 4885009(c.588-1735T>C), 4885010(c.588-1734T>C), 4885036(c.588-1708C>T), 4885082(c.588-1662A>T), 4885125(c.588-1619G>A), 4885346(c.588-1398A>T), 4885381(c.588-1363C>T), 4885486(c.588-1258G>A), 4885539(c.588-1205G>A), 4885572(c.588-1172C>G), 4885694(c.588-1050A>T), 4885718(c.588-1026G>A), 4885802(c.588-942G>A), 4885905(c.588-839G>A), 4885937(c.588-807T>C), 4885938(c.588-806C>T), 4885950(c.588-794A>G), 4886067(c.588-677C>T), 4886339(c.588-405G>A), 4886421(c.588-323C>T), 4886429(c.588-315G>A), 4886544(c.588-200A>G), 4886573(c.588-171T>C), 4886651(c.588-93C>T), 4886679(c.588-65C>T), +1kb 4886886(c.54570C>T), 4887065(c.54749C>A), 4887107(c.54791A>C), 4887488(c.55172G>A), 4887527(c.55211T>A), 4887589(c.55273A>G), 4887737(c.55421A>G), 4887807(c.55491T>G), 4887984(c.55668T>C), 4888092(c.55776C>T), 4888116(c.55800T>A), 4888122(c.55806T>C), 4888129(c.55813T>C), 4888147(c.55831A>G), 4888351(c.56035C>T), 4888362(c.56046T>C), 4888529(c.56213A>G), 4888553(c.56237T>G), 4888613(c.56297T>C), 4888645(c.56329T>G), 4888688(c.56372T>A), 4888759(c.56443A>C), 4888843(c.56527G>A), 4889078(c.56762G>T), 4889123(c.56807T>G), 4889132(c.56816G>A), 4889388(c.57072C>A), 4889422(c.57106C>T), 4889827(c.57511C>G), 4889866(c.57550G>A), 4889909(c.57593A>T), 4889962(c.57646T>G), 4890037(c.57721C>T), 4890085(c.57769C>T), 4890146(c.57830A>G), 4890291(c.57975T>C), 4890532(c.58216T>C), 4890557(c.58241C>T), 4890693(c.58377G>A), 4890830(c.58514G>A), 4891114(c.58798C>T), 4891135(c.58819G>A), 4891261(c.58945A>G), 4891306(c.58990A>C), 4891436(c.59120T>C), 4891511(c.59195A>G), 4891576(c.59260C>T), 4891717(c.59401T>C), 4891728(c.*59412A>C),
Insertions	-1kb 4805201 (c.-2713_-2712insTATT), 4805467 (c.-2447_-2446insT), 4805733 (c.-2181_-2180insAG), 4805984 (c.-1930_-1929insT), 4805988 (c.-1926_-1925insT), 4806132 (c.-1782_-1781insCG), 5'UTR CDS 3'UTR INTRON 4809702 (c.69+1736_69+1739dupAATG), 4812632 (c.69+4654dupA), 4813145 (c.69+5169_69+5174dupTTTTTT), 4813751 (c.69+5769dupG), 4813814 (c.69+5833_69+5834insTC), 4813885 (c.69+5908_69+5909dupTT), 4821398 (c.70-7178_70-7177dupTT), 4822996 (c.70-5588_70-5587insA), 4823262 (c.70-5317dupT), 4823493 (c.70-5091_70-5090insT), 4823988 (c.70-4572_70-4569dupCTGT), 4825117 (c.70-3465dupC), 4825499 (c.70-3085_70-3084insTT), 4826406 (c.70-2177dupG), 4827132 (c.70-1445dupT), 4827837 (c.70-744_70-743insATTA), 4828136 (c.70-447_70-446insGTGTAT), 4829465 (c.136-803_136-802insAAAGGC), 4830387 (c.183+73dupT), 4832239 (c.184-73_184-72dupTT), 4832464 (c.65+83_65+84insGATT), 4832998 (c.65+618_65+622dupTATAA), 4833881 (c.65+1503_65+1504insAGAAA), 4837254 (c.139+180_139+181insGTT), 4838045 (c.139+977dupA), 4838790 (c.140-597_140-596insC), 4839315 (c.140-59_140-58dupAA), 4839974 (c.241+486_241+487insA), 4841647 (c.418+516dupA), 4842567 (c.418+1437_418+1438insGGGC), 4842876 (c.418+1753dupT), 4847410 (c.418+6279_418+6280insGT), 4850171 (c.418+9042dupG), 4851195 (c.418+10064dupA), 4851281 (c.418+10149_418+10150insA), 4851312 (c.418+10179_418+10180dupTT), 4851470 (c.418+10338_418+10339insC), 4852436 (c.418+11304_418+11305insGTT), 4852569 (c.418+11436_418+11437dupGT), 4852602 (c.418+11471dupA), 4852605 (c.418+11473dupA), 4857702 (c.419-9767_419-9766insGGT), 4859195 (c.419-8275_419-8274insTA), 4859793 (c.419-7676_419-7673dupTAAA), 4862114 (c.419-5356_419-5355insA), 4862117 (c.419-5353_419-5352insTAC), 4862363 (c.419-5105_419-5104insGTCA), 4864569 (c.419-2900dupT), 4865922 (c.419-1546_419-1545dupTA), 4865925 (c.419-1546_419-1545dupTA), 4867144 (c.419-325_419-324insTTT), 4867852 (c.481+320_481+321insTTT), 4868319 (c.481+787_481+788insGG), 4870545 (c.481+3016_481+3017insGGATGA), 4872565 (c.481+5033_481+5034dupTT), 4875100 (c.482-2927dupT), 4875646 (c.482-2381_482-2380insATTTCTA), 4876304 (c.482-1721_482-1720insTGGTATA), 4879019 (c.587+888_587+889insCCTCAGG), 4883306 (c.588-3438_588-3437insC), 4885173 (c.588-1570_588-1569insGTTG), 4885508 (c.588-1236_588-1235insA), +1kb 4888267 (c.55951_55952insT), 4891488 (c.59172_*59173insT),
Deletions	-1kb 4804070 (c.-3843_-3839delAAACC), 4805912 (c.-2001_-1997delTGCCA), 4807158 (c.-755_-753delAGG), 5'UTR CDS 3'UTR INTRON 4809863 (c.69+1914_69+1921delTGTGTGTG), 4811119 (c.69+3188_69+3190delCCT), 4814343 (c.69+6368delT), 4819646 (c.70-8936delT), 4820170 (c.70-8413_70-8412delTT), 4820238 (c.70-8345_70-8342delTCTC), 4820565 (c.70-8018_70-8011delTGTGTGTG), 4821300 (c.70-7283_70-7280delGCAG), 4822271 (c.70-6306delT), 4822510 (c.70-6069delT), 4823128 (c.70-5455delA), 4825339 (c.70-3243delA), 4825971 (c.70-2612_70-2611delTC), 4827015 (c.70-1568delC), 4829348 (c.135+704delA), 4830645 (c.183+331_183+333delAAT), 4830678 (c.183+373delT), 4830687 (c.183+373delT), 4832269 (c.184-41delT), 4832509 (c.65+129_65+137delCTTTCCTTT), 4832687 (c.65+307_65+309delCCT), 4832701 (c.65+321_65+322delTC), 4834494 (c.65+2122_65+2123delAA), 4837280 (c.139+208_139+213delTCCTTT), 4840727 (c.242-218delA), 4841339 (c.418+214_418+217delATTT), 4841845 (c.418+725_418+728delGAAA), 4842036 (c.418+909_418+916delAGCGTGGT), 4843167 (c.418+2036_418+2037delTA), 4844478 (c.418+3350delA), 4844780 (c.418+3651_418+3653delTAA), 4847395 (c.418+6264delT), 4848042 (c.418+6921_418+6927delAAAAAAA), 4849360 (c.418+8229_418+8230delAA), 4849406 (c.418+8283_418+8286delAGAA), 4849558 (c.418+8427_418+8428delAA), 4849641 (c.418+8510_418+8511delAA), 4849771 (c.418+8661_418+8666delCAACAA), 4850353 (c.418+9226delA), 4850742 (c.418+9611_418+9612delTT), 4850769 (c.418+9638_418+9639delAA), 4851710 (c.418+10579_418+10581delAAT), 4851749 (c.418+10618_418+10626delTAGTATAGT), 4852172 (c.418+11045_418+11051delTCTTCCT), 4855543 (c.419-11924_419-11919delACATCA), 4855981 (c.419-11486delG), 4857204 (c.419-10265_419-10263delGAC), 4857256 (c.419-10210delA), 4857259 (c.419-10210delA), 4858033 (c.419-9430_419-9427delTCAG), 4858983 (c.419-8486_419-8483delTTTA), 4860613 (c.419-6856_419-6855delTT), 4860794 (c.419-6665_419-6664delTT), 4861006 (c.419-6461delT), 4861348 (c.419-6121delG), 4861409 (c.419-6052_419-6049delTTCT), 4861417 (c.419-6052_419-6049delTTCT), 4865013 (c.419-2455_419-2454delCC), 4865608 (c.419-1859delA), 4866027 (c.419-1442_419-1439delAGGC), 4867091 (c.419-378delT), 4867298 (c.419-171delT), 4867618 (c.481+91_481+94delAACT), 4868488 (c.481+962_481+965delCTAA), 4868648 (c.481+1120_481+1122delGTT), 4870935 (c.481+3404_481+3405delCA), 4871138 (c.481+3619delT), 4872331 (c.481+4811_481+4812delAA), 4872490 (c.481+4959_481+4960delCC), 4872525 (c.481+4994_481+4995delAA), 4872626 (c.481+5095_481+5108delAATACAATAATACA), 4874324 (c.482-3690_482-3686delTTTTT), 4875199 (c.482-2827_482-2820delGTTTTGTG), 4875989 (c.482-2037_482-2035delTTC), 4877914 (c.482-111delG), 4878333 (c.587+203_587+204delTT), 4882104 (c.587+3978delT), 4882259 (c.587+4136_587+4137delTT), 4882709 (c.588-4030_588-4027delTATC), 4883730 (c.588-3013_588-3007delACTTTAC), 4885048 (c.588-1695_588-1694delTT), 4885639 (c.588-1097_588-1096delTT), 4885859 (c.588-881_588-880delAT), +1kb 4887199 (c.54884_54885delTT), 4887398 (c.55083_55084delAA), 4888625 (c.56310_*56312delTTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000155020)	MCGNNMSAPMPAVVPAARKATAAAWMGRSLCRYQKSPHQIHLSTCPCDASHIKYEYGYAF LV*
MSMv4 transcript	MCGNNMSAPMPAVVPAARKATAAAWMGRSLCRYQKSPHQIHLSTCPCDASHIKYEYGYAF LV*
homology	100.00 (63 / 63)

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ATTTTATGTTCATAATGAGAGCTAAAGACAGTTGTGTTTTCTTTTAAAGT CACAAAGAAAAGACCTAACAGTTTGACTTAAATATAGTGGCATTGCTGGGTGTGGTGGCA AACACACTCAGGAGGTAGAGTTAGGAGTTTGAGGCCTGCCTGGTCTGCAATGTGAGTTCC AGGACAACCAAGGCTACACAGAGAAACCATGTATCGAAAAAGCAAAAAATATATAGAGGC ATAAGCCTTGTGAATCACATTACTACCATTTTGGGGGAGGGTTATCAATTTAACATTTTT GAGAATGTTTAAACTTTTCAATATTTAAGGGCAAGACTGATTTAAAACCGTTTTGAATAA GACTCCAAAATCTCTCAGGACCTAGATTTTCCTGTGTAATTTAATTAAGTCTTTTAGTCT TTAAGTCTTAGTTCACAAACTCCTTTCCAGTCAAAACTGTATATTTGGTTTCCTCACTGG ATTGCAGACTTCTGAAGGTCATGACATTTTGACCTTAAATGTTTGCCATGAACCGTTCCC CAGTTATACATACTATATATGCAATAAATTCAGCGCTGTGCAGAAGGGTGGCGATTTTGC CCCGTGTTCAAAACGGCTATATTTCAATGAATACCTGTCCTTTAGTTAATGACGTTGACC TGCCTGGGGAAGTGAAATCGGGAGTCACGCGTCAAGCGCGCAGGGGACCACAGCAAGAGC TCGCCCCGCCTAGCCTCGGTCCCAGCAGCGGTCCCTGCTACCTGCCGCTGGTCCAGGCCC TGCGGGCGTGGATGGACAGCGAGAGGTTAGCAGCGGCCCGCACTGCTCCAGCTCGGTGCG GGAAGGCTCACTATGACGCGCACGCGCGGCCGAATCGGGGCGCGAGCTCGGGGCCGAACG CGAGGAACAGTGCAGGGCGGCGCGGGGGCGCGCACGCGCCTGAGCGCGCGCCCGGAGGGG CGGGCTGGGACTTTCGGCTGCCGGGAGCCCGAGTTCCCTTCCGCTTCCGA
1	EXON 1	4,807,892	4,807,982	-	0	91	CGCACTGTCCGCCAGCCGGTGGATGTGCGGCAACAACATGTCCGCTCCGATGCCCGCCGT TGTGCCGGCCGCCCGGAAGGCCACCGCCGCG
	INTRON 1 - 2	4,807,983	4,828,583			20,601	GTGAGTGGCGGCGCCCGGGCCTGGG..........CATGCTTTTCATACTTTTCTACCAG
2	EXON 2	4,828,584	4,828,649	0	0	66	GCATGGATGGGCAGAAGCCTTTGCAGGTATCAAAAGTCCCCACATCAAATACATCTGTCC ACATGC
	INTRON 2 - 3	4,828,650	4,830,267			1,618	GTGAGTATTTCTAATATTTAGCTTT..........TGCTGTTTGTTTCTTTTCCACCTAG
3	EXON 3	4,830,268	4,830,315	0	0	48	CCCTGTGATGCCAGTCACATTAAATATGAATATGGCTATGCCTTCTTG
	INTRON 3 - 4	4,830,316	4,832,310			1,995	GTAAGTAAGAGTTTACTTCCTCATT..........ATTTCACACTGTGCTTGTATTCTAG
4	EXON 4	4,832,311	4,832,381	0	-	71	GTTTGATATCGTTGGACTTTCACCAGATTCCCAGGAAGATGAATCTGGAATTAAACAGGC AGCAGAAACTG
	INTRON 4 - 5	4,832,382	4,837,000			4,619	GTGAGTACCGAAAGCATTTATAAAG..........TGTATGATACTTTTCTTGCTTTCAG
5	EXON 5	4,837,001	4,837,074	-	-	74	TAAAAGCCTTGATAGATCAAGAAGTGAAGAATGGCATTCCTTCTAACAGGATTATTTTGG GAGGATTTTCTCAG
	INTRON 5 - 6	4,837,075	4,839,386			2,312	GTAAGTCAGATTGGCATGTCCACAC..........GGTTAACTCTCTGCTTTTGTTCCAG
6	EXON 6	4,839,387	4,839,488	-	-	102	GGAGGCGCCTTGTCTTTATACACTGCTCTCACCACACAGCAGAAACTGGCTGGTGTCACT GCACTCAGTTGCTGGCTTCCACTTCGGGCTTCGTTTTCACAG
	INTRON 6 - 7	4,839,489	4,840,955			1,467	GTAGCCTGCATGGTGTGAATCTTAC..........CATTGCCTTTGTGTTTGTCTTGCAG
7	EXON 7	4,840,956	4,841,132	-	-	177	GGGCCGATCAACAGTGCTAATCGAGATATTTCCGTTCTCCAGTGCCATGGAGATTGTGAC CCTTTAGTTCCCCTAATGTTTGGTTCTCTTACTGTTGAAAGACTAAAAGCATTGATAAAT CCAGCCAATGTAACCTTCAAAATCTATGAAGGCATGATGCACAGCTCATGTCAGCAG
	INTRON 7 - 8	4,841,133	4,867,469			26,337	GTAGGTGTCTCTGGAAGCAGTGAGT..........TCAATAAACTTGTTTTATTTTATAG
8	EXON 8	4,867,470	4,867,532	-	-	63	GCTGGCGCATTGGATTTGCTGAAAGAGCTTAAGAATATTCCCATGACCCTAGAATTGCTA CAG
	INTRON 8 - 9	4,867,533	4,878,026			10,494	GTATGTGCTTCTGTGTTTCACACAG..........ACACTTTGTTCTTGTTGCCTTGCAG
9	EXON 9	4,878,027	4,878,132	-	-	106	TCCACAAGAATTGGAATGTCTGTCAATGCTCTTCGCAAGCAGAGCACAGATGAAGAAGTC ACCTCTCTAGCCAAGTCTCTCATCAAATCCTGGAAAAAATTATTAG
	INTRON 9 - 10	4,878,133	4,886,743			8,611	GTAAAATTGATCATTGCTTGCACGT..........TTTAGGAATTTGATAAATTTTTCAG
10	EXON 10	4,886,744	4,886,770	-	-	27	ATGGACCATCAACTGATAAAGACCCTG
	3' upstream sequence						AAGAAAAGAAAAAAGAGCCTGCAATTTCATCACAGAATAGCCCTGAAGCAAGAGAAGAAA GGTAGCTCACTTTGTATGTAAATTGATCTCTGCTAAGGTTGCTGTCTTAGGATTTTTATT GCTGTGATAAAGAATATGATCAAACTTGGCAGTGGTGGGTAATACATGCCTTTCATCTCA GTAATTAGGAGGCGGAGTCGAATGGGTCTCTAAGTTGGCCAGGACAACAGAGAAACCCTG TCTCAAAAAAAAAAGAACAACAACAACATCAAAAAAAAAAAAAAAAAAAAAAAAACCAAA AAACAAAAGAAGCAGAAAATAAAGGATCAATAGGGTCCATATCCCAGGACAAGTTCGTTG AGGGATACCAAAGCAGGAAGCCATGGAGGAATGTTGCCTTACTGGCTTGGTACTTAAGGC TTGTTGCTCTTTTTTATACAATCCAGGACCACCTGCCCAATTGTGGCACCATCCACGGTG AACAGGACTCTCATCAATCACTAATTAAAAAGTGCCCCATAGCCTGATCTGTGGGCAATC TAGTGGAGACCTTTTCTCAGTTGAGGTTTCTCTTACCAGATAACTCTAGTTTGTGTCATG TTAACAACAACATCAACAAAACAAAAACAAAAAAAAAACAGCAATAGTAACTAGGTAGTT TACCTGCTCCATCACTTTTTTTGGTCTTCTGGTCTTCCCTTCACTACTCTTCCCACTATC TAGTCAAATGGGACTAGTACACGTGTATGCTAACTTAAAAAAATTTAGCAAGATTTCTTA GAATTTTAGAAGGAAAAATAGAAGTCTACATAAATAAAGTGAAATTATTTATTTTATACT TTTAATAAGTTTGAATAAGATTGCTAGGGCTAGCAATAATAAATCCGATATGAAGGTACT GATTAGGGATTGACCCTGGAACTCATTTGCCTTTTGAGTACTTTTCCTCCCAGATTTAGC CATTTAGAAGAAAATGAGTTTTCAGTGTATTTTTATTAGT..........

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 63 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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Target CDS Information

Detail Map

Report

Polymorphisms Report

Exon Detail Report

Sequence Detail Report

Gene Symbol (Gene ID)	Gm37988 (ENSMUSG00000104217)
Transcript ID	ENSMUST00000155020