top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Gls (ENSMUSG00000026103)
Cross Reference
EMBL AC123752
GO GO:0001967, GO:0002087, GO:0004359, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Gls-003
OTTP OTTMUSP00000023784
OTTT OTTMUST00000050760
UCSC uc007ayg.1
UniParc UPI0000F22064
Uniprot/SPTREMBL F6U529
Vega_transcript Gls-003, OTTMUST00000050760
Vega_translation 179246, OTTMUSP00000023784
Definition protein_id:ENSMUSP00000115358
translation:
EDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERES
GDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITG
ERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPP
LDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREGGDQRLGPFITQVH

Chromosome 1
Length
Position(start - end)
24,384
52,187,824 - 52,212,209
Orient to Chromosome minus
Link Location : (1:52187824-52212209)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gls (ENSMUSG00000026103)
Transcript ID ENSMUST00000155587
Reports
substitution
cSNPs1
Insertion29
Deletion35
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 52191189 (p.Ser125Ser),
non-synonymous substitutions
B6 transcript
(ENSMUST00000155587)
EDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERES
GDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITG
ERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPP
LDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREGGDQRLGPFITQVH*
MSMv4 transcript
EDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERES
GDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITG
ERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPP
LDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAKKLDPRREGGDQRLGPFITQVH*
homology100.00 (236 / 236)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gls (ENSMUSG00000026103)
Transcript ID ENSMUST00000155587
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTATTATAGTTAAACATGTTAATTTTTAAGGAGTAATTCTTAAAAGGGTT
AGTTTACTCTGAAGTAGTAGTAAAAAAAATCATTTAACATCTAATAAAACTGTTACTCTG
TTGAGTACTTTAAGCTTTTGCCATTTTTTTTTTTGCAGTGTCCTTCTTTAAACATACTCT
TTATGTTTACATGTGTTGTGTGCTTGTTGAGATCAAAGGATAACCTGTAGGAGTCTATTC
TCTCTATCATGTAGGATCCAGGGGTCAGGCTTGGTGCTGGCCACCTTTACTACAGCATCA
TCTAGCAAGTCATACCTCTAATGTTGAAGTACACATTTATGGTTGAATTACGGGAAAATA
TTTATAAATTAGAATTAATAATACCAAAGTACCCAAAAAGCTGAAGGGGTTTGCAGCCCC
ATAGGAGGAACAACAATATGAACCAACCAGTAACCCCAGAGCTCTCAGGGACTAAACCAC
CAACCAAAGAGAACACAAGGAGGGACTCAAGGTTTTAGCCGCATATGTAGCAGAGGATGG
CCTAGTCGGTCATCAGTGAGAGGAGAGGCCCTTGGTCTTGTGAAGGCTCAATGCCCCAGT
GTAGGGGAATGTCAGGACCAGGAAGCAGGAGTGGGTGGGTTAGTGAGGGGGGGGAGGGTT
CAGAGGGAAATGAGGAAAAAGAAAAAAAAGAATCACAAATATGATCTTATCAAATAAATC
TTTGTTATCACAGGAAATACAATAAAGTAATTTAAATTAAAAATAATTAAATAATAATAC
AAAAGAACAAGTCAAATCATGCCAGTAATAGTTTCTAGTTGATACTAATTGATTTTTAAA
TCTACTTTAATAGGCATTCTATTGGAGATACCAAAGTTCCTTTTTGTCTTCAGTCCTGTG
TAAAACCCCTGAAATATGCAATTGCTGTTAATGACCTGGGAACTGAGTATGTGCATCGCT
ATGTTGGGAAGGAGCCAAGTGGATTAAGATTCAACAAACTCTTTTTGAAT
1 EXON 1 52,212,203 52,212,209 - 1 7
GAAGATG
INTRON 1 - 2 52,207,360 52,212,202 4,843
GTAAGGAGTACCTACAAATGGGCTG..........ATGCTGTCACGATTATGTTTTACAG
2 EXON 2 52,207,301 52,207,359 1 0 59
ATAAACCACATAATCCTATGGTAAATGCTGGAGCAATTGTTGTGACTTCTCTAATAAAG
INTRON 2 - 3 52,199,888 52,207,300 7,413
GTAAAATGTTGACATTTCTTTTTAA..........ATGCTTGCCTTTCATTTCTTTTCAG
3 EXON 3 52,199,855 52,199,887 0 0 33
CAAGGAGTAAATAATGCTGAGAAGTTTGACTAC
INTRON 3 - 4 52,199,770 52,199,854 85
GTAAGTATTAACACCACACTATGTT..........AATAAACTTCTGATTTGGTTTGTAG
4 EXON 4 52,199,711 52,199,769 0 2 59
GTGATGCAATTTTTGAATAAGATGGCTGGTAATGAATATGTTGGATTCAGTAATGCAAC
INTRON 4 - 5 52,196,810 52,199,710 2,901
GTAAGTCTAATTTGTGTTTTGGGTT..........AACAACCATCATTTTTTTCTTCTAG
5 EXON 5 52,196,743 52,196,809 2 0 67
GTTTCAGTCTGAACGAGAAAGTGGAGATCGAAATTTTGCAATAGGATATTACTTAAAAGA
AAAGAAG
INTRON 5 - 6 52,196,216 52,196,742 527
GTTTCAAAATTTTTTCTATTCAAAG..........TTTTTTGGATTTTGCTCTTTTCCAG
6 EXON 6 52,196,165 52,196,215 0 0 51
TGTTTTCCAGAAGGCACAGACATGGTTGGGATACTAGATTTTTACTTCCAG
INTRON 6 - 7 52,191,288 52,196,164 4,877
GTAATTTTTACTCTGAGTTTTATGA..........AAAACTCATTTTTTCTCTGTTTTAG
7 EXON 7 52,191,111 52,191,287 0 0 177
CTGTGCTCTATTGAAGTGACATGTGAATCAGCAAGTGTGATGGCTGCCACCTTGGCTAAT
GGTGGTTTCTGCCCAATTACTGGTGAAAGAGTCCTCAGCCCTGAGGCAGTTCGGAATACA
CTGAGCTTGATGCATTCTTGTGGCATGTATGACTTCTCAGGGCAGTTTGCGTTCCAT
INTRON 7 - 8 52,189,555 52,191,110 1,556
GTAAGTATTTGCTGATTTTCTCTCG..........GCCCTTTTATTTAAATTATTTTCAG
8 EXON 8 52,189,423 52,189,554 0 0 132
GTTGGTCTTCCTGCAAAATCTGGAGTTGCTGGGGGTATTCTTTTAGTTGTCCCCAACGTC
ATGGGCATGATGTGTTGGTCTCCTCCTCTTGACAAGATGGGCAACAGTGTTAAGGGAATT
CACTTTTGTCAC
INTRON 8 - 9 52,188,772 52,189,422 651
GTAAGCAAATTTTATTAGTGAGGAA..........ATGTATTCTGTGTAACTCTTTACAG
9 EXON 9 52,188,679 52,188,771 0 0 93
GATCTTGTTTCTCTGTGTAACTTCCATAACTATGATAATTTGAGACACTTTGCAAAAAAA
CTTGATCCTCGGAGAGAAGGAGGTGATCAAAGG
INTRON 9 - 10 52,187,854 52,188,678 825
GTAAGCCAGTCCTTCCTTAGATCCT..........TTTCATTGAAAAATACATTTTATAG
10 EXON 10 52,185,280 52,187,853 0 - 2,574
CTTGGACCTTTCATCACTCAAGTGCACTAATAAATTGTGTATGTTGCTTGAACAACTAGC
ATTCCTTTGGACCATTGGACTATGAGAGTCTCCAGCAAGAACTTGCTTTAAAAGACACAG
TATGGAAAAAAGTGTCACCTGAGTCAAGTGACGACACCTCTACAACTGTAGTATATAGAA
TGGAGAGTCTGGGGGAGAGGAGCTAGAGATGGGCTCTAGCTACAGAACAGAACGATTCTC
CTTTTAACATCGGAAACATCTTTAGGCTTTTGTTTCTTGTTTATCTTTCCAAACTAAGTA
TTTATTCAAGTATTCTATTGTTATCAGTTTTGGGTACTGGAGCCATAAATTTAAAAAAAG
GTTCTGTTTTGGTTTGGTTTTTTTTCGCTTGTAATCTTTGTATAAAAAACATTTGTTATT
TTTTAAAAGAGCATTTACAAATAAAGCAAATTTGCTTTATTTTTTAAAACTTTTTTAAAA
AATGCAATTTCCTTAATTACATTAAAAATTTAACTATAAAATTTGGTAAGCACATTGTTT
TTCTTAGTTCTGAAGCCTGCATATTAAACTGAGACGTATTGTTGGATTTGTCTTTTCCTT
TCCAGTTTTATAATTGATAGGCTATATTGGTAGTGACAGAAAGTACTTCCATGCTAAATA
TAAAACTAAAAAGGCAAAGTAATCAAAATTATTTAAAAGAGTACTAGATTATAAAATTAG
CTTTAGTTTACACATATGCCAGTTATAGCGGTAGATTGGCTTTGAATATTTAAAATGCAA
ATACTTTTAAATATGTCTTTTTTTTTGTTTGAAAAGTTCTGTCCTGTCAGAATCACAATG
TATTAGGAATGTTTCACATCACTGAAACACTCCAGCCAAAGAATTGCAGATGTGTGAGAA
TGGCATGCCCTGTTATTTAAAAGCTACAATGGTTAGTTGCTCAGAAAAAGAGTCAATAAC
TATCTTCAAAATGGATTGTATTTTCATATTCTTCATGTAATTTTTTTGTTGTATTTAAGT
ATGAACGGTAAATTTTGCTTTTTTAGCTTTTAGTAATTTTATTATGTTTCATAAGTGCTA
ATGAATATTTTGTGATAATTATAACATCTCATAAATTTTGTTCTTTTTGAACTTTTATTA
GCATACTTATGAAATGAATATAGTCTGAAGGTGTTAAGTATACAACTAAAATATTTGTTG
AATTGGAATGCTTCTGTTTATTTTTAAAATGCAATATTGAGAATCAAAACTTTTTTCAAG
AGAATCATAGGTTCCATTTTATCTCGTCATAAACAGATATACATATTTTTAGAATCTATC
TTGGCAAAATGATACTAATGTTCTGCAGGATTTATTTACATGTCTTCCTTCGTGTATTTT
GTTTTTCTCACAATTTCAAGTTTGGTTTTTCAAATTCACTTTTAAACTTGTAAATTTTGG
GCAAGTGGTTGAGAATGAAAGCCTTATAGCTTTTTAAATTATGGCACATGTATAGTAGAG
CAGATTCTGTAACTAAAGAAAGTGCGTGAAAAATAGTTCACTGATAGGCTAAGTAAGATA
CAGGAAAGTCCTGATGGTCTGATTTGAAACTGGGAACTCTGATATTAAGAAAAGGGTTCT
TCTCAGAAGTTCGACCTTAAAGCCTTTGGGCTAACTTAAGTATTAATATTTGTATTTAAA
TAATTACATGGTGGGTTTTAGAAAGGCTGGCTGTCCTGCCCCTTTGGTGTTCATATGCAT
TCCCCAGACTGATGCTTTAAAAGCCTTGCCACTGCCCTGCCTGTGGACACTAATCATCTC
TTTTTCTTGTATCCAGAGTGACTGTGATTCAGGTAATTGAGCACCATGATTGGAAAAAAG
ATTTTAGGTTTATTTCCCCTCCATTTTTATGTGTACATTTTGTTGTTTCATTCAGAAGTT
GGATTTACTTTACAAAATGACTTAATTTTCATATTGTGGTCATGTTTGTGTAAACTTCAA
ACTATTTTGTTAATTTTTGGCACTTCCTATATATAATTCTAGTAATGCTTGAATGTACAC
TTAAATAAGAAGTAGGATTAAGTCAGCTGCTGTGTTTAAAGAATGCTGTTAAGAACAAGC
ATTCAAAACTGTATAGGAAGGTATTAGCTTAAGAGTAGGTAAGATACCGTGACTGTATCT
GCAGACAAGAAGAGGAAAGAAAAGCTTTGCCAGTTTGTGGATTTATCTTAATTCCCTTCA
GTATATTCAATCTCTTTTCAAATAAAGTTCTTTGAGAAGTACCCAGTATTGTTGGGTTTA
ATTTTTCCTACTATTATTGATTCTTGATATTCAAGCATTTACATGACAGCGTATTTTTTT
CTTTTCCTTTTTTCTGTTTATTTTTTTTTGCTATCATTAACATTTCATTTGAAATGCATA
CTCTTCTTGAAATATTTTGTTTTTAGCATAAATGTTGTGCATTTTATCTTAGTGTTTGGA
TTAAAACATTTGTGTTGTTGAGCTTTCTTCATTTGCTTTGTATATTTAATAATGTATCTT
TATTTTCCAGTATGCCTATTTTTTGTATTGTACAATAAATTTATTTTAAGCTGA
3' upstream sequence
TTTTATTGTTTTTTTTAATATATATGTAAAAACACCTGTGATATTTAAAGTACAAAAAAA
CAGCAAAACAAAACACTTGGGGTTTTAACTTAGAAAAAAATTATCTTATCTGAAAAAACA
TACCTTTATGAAGATTGCCTGGAAAAGAAACTAGAAACCAGAAAGTCTTCATTTGAGTTT
TAACTTTTAATGAAGTATAGTAGGGAGGAATTTTCCCATCTGTTGTACTTGAATTATTTA
AATAAAGACTTGACCGACCTGCCCCTAGTCACATAAAAAAGAAAGGAAAAGAAACAAGAA
AACACCTTATTCTATTTGCAGGCCGTTTCTGCTTCTGAGGGAGAATGTAACTGATGACAT
TTGCTGTTTAAATAGTAGGGGAAACCACTGCCAAATCAGTAAGATGTATTGCTTTGCTCA
GGATAACATTGTTGTTCTCAGTACAGTAGAGTGCATATGGAGTCGGCTGACTGAAGTCTA
CCTTTCAGAGCTGTTCTATATTTTTCAAATTGTTTCAAATTATCATCCAAATTACATAAA
TGGAATACATGCATTGTTGGCACATTTTTCTGTTTGACTAAATCATATTTTAGAGGGATT
CCCTAAATACATTTTAAATATTTTGAAAAGGAAAGTATTTTTGTTTGTGTTAATTAGCAT
CAATAGATGGTATTTAAAAAAATAACTTTCAGTACTAATTAACAAGTTTCAGTATGGTTT
ATGTTATATTTATAGTAGTATGTTTACTTAAGCTAAAGATACATTTCTTAACCCATTGAA
AACAAAGGGAACAGAAAATGCTGCTCGGACAGTGTAGTCATTCATAGGTTTGTGTGTATG
TTTGTGAGTATATGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAATTTATCTCCTGGGTGTACCTGTTTCAATTTACCAATTCTGAAAATGACCTCCTGTT
TCCATGTAGTCTCTTAGATATGATTTATTAAATCACTGTA..........

Sequence Detail Report

Gene Symbol (Gene ID) Gls (ENSMUSG00000026103)
Transcript ID ENSMUST00000155587
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 236 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information