MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cspp1 (ENSMUSG00000056763)

Cross Reference

EMBL	AC102570, AC159972
GO	GO:0000922, GO:0005654, GO:0005813, ...show all
goslim_goa	GO:0005575, GO:0005622, GO:0005623, ...show all
MGI_trans_name	Cspp1-008
OTTP	OTTMUSP00000034273
OTTT	OTTMUST00000067949
UCSC	uc007ahg.1
UniParc	UPI000021674A
Uniprot/SPTREMBL	D3Z378
Vega_transcript	Cspp1-008, OTTMUST00000067949

Vega_translation

178699, OTTMUSP00000034273

Definition

protein_id:ENSMUSP00000117726
translation:

MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ
QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQ

Chromosome

Length
Position(start - end)

13,736
10,045,086 - 10,058,823

Orient to Chromosome

plus

Link

Location : (1:10045086-10058823)
/

Detail Map

name	Cops5 (ENSMUSG00000025917)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cops5 note : COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) [Source:MGI Symbol;Acc:MGI:1349415]

name	Cspp1 (ENSMUSG00000056763)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cspp1 note : centrosome and spindle pole associated protein 1 [Source:MGI Symbol;Acc:MGI:2681832]

name	1700047N06Rik (ENSMUSG00000102356)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : 1700047N06Rik note : RIKEN cDNA 1700047N06 gene [Source:MGI Symbol;Acc:MGI:1923853]

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000191012

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000071087

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000117415

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000118263

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000122156

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119714

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000155974

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000186294

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000149214

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cspp1-019 Vega_transcript:OTTMUST00000118986 Uniprot/SPTREMBL:A0A087WS14 UCSC:uc007ahg.1 EMBL:AC102570 EMBL:AC159972 GO:GO:0000922 GO:GO:0005654 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-019 Vega_translation:178693 Vega_translation:OTTMUSP00000066331 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066331 OTTT:OTTMUST00000118986 UniParc:UPI0004620FB1
definition	note : transcript_id=ENSMUST00000191012 protein_id : ENSMUSP00000140856 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGMV

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS35511.1 Uniprot/SWISSPROT:B2RX88 RefSeq_peptide:NP_080769 RefSeq_mRNA:NM_026493.3 RefSeq_mRNA_predicted:XM_006495483 RefSeq_mRNA_predicted:XM_006495484 RefSeq_peptide_predicted:XP_006495542.2 RefSeq_peptide_predicted:XP_006495545.1 RefSeq_peptide_predicted:XP_006495546.1 RefSeq_peptide_predicted:XP_006495547.1 RefSeq_peptide_predicted:XP_006495549.1 Vega_transcript:Cspp1-004 Vega_transcript:OTTMUST00000067846 UCSC:uc007ahi.1 GO:GO:0000922 GO:GO:0000922 GO:GO:0005515 GO:GO:0005515 GO:GO:0005654 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005813 GO:GO:0005819 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0032467 GO:GO:0051781 GO:GO:0051781 MGI_trans_name:Cspp1-004 Vega_translation:178694 Vega_translation:OTTMUSP00000034200 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034200 OTTT:OTTMUST00000067846 UniParc:UPI0000F0887C
definition	note : transcript_id=ENSMUST00000071087 protein_id : ENSMUSP00000068804 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRPHGSRRGYVDGDDVPEEPNTQISAAENKSVHCNGPPRSADLDITSPFAGMLFGGEDRELTKRRKEKYRQELLEQIAEQQKKKRREKDLAFGITTSGVQDPEKSPDRLKQFSLTPRHFEEMPPERPRVAFQTPPPPFSAPSSPSVPPVHSAPSHNEDLHSGLGSTLGELAHPRVLPVPLNPPPPPLLAPPASNYRTPYDDAYYFYGARNTLDPNIVYYGSGMIGGQPAPHVSAPVTHQVAPPAVNTVGQNEQKVLSDGLRNSGLVFEDKPKPSTQSLQSYQEALQEQIREREARRKKERLEKEEYEAKLEAEMRIYNPWGKGGGGAPLRDAKGNLITDLNRMHRQNIDAYHNPDARTYEDKRAVVSIDQNLATSNAENLEDSANKNSGPLQTQSSPFARGNTFGEPLSELQIKQQELYKNFLRFQIEEKRQREEAEREKLRVAEEKEEKRLAEQRARIQQEYEEEQERRREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGDETKHLRQPSPVVPALQNKIASKLQRPPSVDTIISSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRKQLRSEERRLQGRLLHLDSDDEIPMRKRERNPMDIFDMARHRVQAPVRRPSPKGLDATTFQNIHDFNELRERDSDTRVDLRLMYPDPPRDHHTLEIQQQALLREQQKRLNRIKMRRDAGADLDTICTDNAQGRRMPRDDTNDFLKNSLLESDSAFIGAYGETYPVIEDNAFPPPSQLPSARERRRNKLKGLDFDSSRLHTPQDGLSLKSISSVNVDQVRMRNEDRMRRLTEQQKKPTNTDDEGSLVDPDDIMRHLSDDGRNSAATEPWLRPGTSESLKRFMAEHLNEEQHKGPGKPGTFTWQGLSAAHA

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-001 Vega_transcript:OTTMUST00000067775 UCSC:uc007ahh.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-001 Vega_translation:178695 Vega_translation:OTTMUSP00000034157 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034157 OTTT:OTTMUST00000067775 UniParc:UPI00000E77D0
definition	note : transcript_id=ENSMUST00000117415 protein_id : ENSMUSP00000112800 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-003 Vega_transcript:OTTMUST00000067777 UCSC:uc007ahk.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-003 Vega_translation:178696 Vega_translation:OTTMUSP00000034158 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034158 OTTT:OTTMUST00000067777 UniParc:UPI00000E77D0
definition	note : transcript_id=ENSMUST00000118263 protein_id : ENSMUSP00000112476 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-006 Vega_transcript:OTTMUST00000067947 UCSC:uc007ahj.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-006 Vega_translation:178697 Vega_translation:OTTMUSP00000034271 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034271 OTTT:OTTMUST00000067947 UniParc:UPI00000E933F
definition	note : transcript_id=ENSMUST00000122156 protein_id : ENSMUSP00000113663 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-005 Vega_transcript:OTTMUST00000067946 UCSC:uc007ahl.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-005 Vega_translation:178698 Vega_translation:OTTMUSP00000034270 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034270 OTTT:OTTMUST00000067946 UniParc:UPI00000E77D0
definition	note : transcript_id=ENSMUST00000119714 protein_id : ENSMUSP00000114091 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cspp1-008 Vega_transcript:OTTMUST00000067949 Uniprot/SPTREMBL:D3Z378 UCSC:uc007ahg.1 EMBL:AC102570 EMBL:AC159972 GO:GO:0000922 GO:GO:0005654 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-008 Vega_translation:178699 Vega_translation:OTTMUSP00000034273 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000034273 OTTT:OTTMUST00000067949 UniParc:UPI000021674A
definition	note : transcript_id=ENSMUST00000155974 protein_id : ENSMUSP00000117726 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQ

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 RefSeq_peptide_predicted:XP_006495544.2 RefSeq_peptide_predicted:XP_011236667.1 Vega_transcript:Cspp1-017 Vega_transcript:OTTMUST00000118990 UCSC:uc011wih.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-017 Vega_translation:178700 Vega_translation:OTTMUSP00000066332 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066332 OTTT:OTTMUST00000118990 UniParc:UPI0001E88EB2
definition	note : transcript_id=ENSMUST00000186294 protein_id : ENSMUSP00000139775 translation : MDLNCYPHLVAGHAHSYLIWRGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRPHGSRRGYVDGDDVPEEPNTQISAAENKSVHCNGPPRSADLDITSPFAGMLFGGEDRELTKRRKEKYRQELLEQIAEQQKKKRREKDLAFGITTSGVQDPEKSPDRLKQFSLTPRHFEEMPPERPRVAFQTPPPPFSAPSSPSVPPVHSAPSHNEDLHSGLGSTLGELAHPRVLPVPLNPPPPPLLAPPASNYRTPYDDAYYFYGARNTLDPNIVYYGSGMIGGQPAPHVSAPVTHQVAPPAVNTVGQNEQKVLSDGLRNSGLVFEDKPKPSTQSLQSYQEALQEQIREREARRKKERLEKEEYEAKLEAEMRIYNPWGKGGGGAPLRDAKGNLISPLQTQSSPFARGNTFGEPLSELQIKQQELYKNFLRFQIEEKRQREEAEREKLRVAEEKEEKRLAEQRARIQQEYEEEQERRREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGDETKHLRQPSPVVPALQNKIASKLQRPPSVDTIISSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRKQLRSEERRLQGRLLHLDSDDEIPMRKRERNPMDIFDMARHRVQAPVRRPSPKGLDATTFQNIHDFNELRERDSDTRVDLRLMYPDPPRDHHTLEIQQQALLREQQKRLNRIKMRRDAGADLDTICTDNAQGRRMPRDDTNDFLKNSLLESDSAFIGAYGETYPVIEDNAFPPPSQLPSARERRRNKLKGLDFDSSRLHTPQDGLSLKSISSVNVDQVRMRNEDRMRRLTEQQKKPTNTDDEGSLVDPDDIMRHLSDDGRNSAATEPWLRPGTSESLKRFMAEHLNEEQHKGPGKPGTFTWQGLSAAHA

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cspp1-007 Vega_transcript:OTTMUST00000067948 Uniprot/SPTREMBL:F6QJJ3 GO:GO:0000922 GO:GO:0005654 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-007 Vega_translation:178701 Vega_translation:OTTMUSP00000034272 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000034272 OTTT:OTTMUST00000067948 UniParc:UPI000164C592
definition	codon_start : 3 note : transcript_id=ENSMUST00000149214 protein_id : ENSMUSP00000119258 translation : XNHQEQQPRIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIEL

name
type	misc_feature
link
xref
definition	note : contig AC102570.8 1..194371(-1)

name	Cops5 (ENSMUSG00000025917)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000072997 Vega_transcript:OTTMUST00000072997 MGI_trans_name:Cops5-002 OTTT:OTTMUST00000072997
definition	note : retained_intron note : transcript_id=ENSMUST00000150509

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118985 Vega_transcript:OTTMUST00000118985 UCSC:uc056ycf.1 MGI_trans_name:Cspp1-016 OTTT:OTTMUST00000118985
definition	note : retained_intron note : transcript_id=ENSMUST00000190610

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000067776 Vega_transcript:OTTMUST00000067776 MGI_trans_name:Cspp1-002 OTTT:OTTMUST00000067776
definition	note : retained_intron note : transcript_id=ENSMUST00000143606

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118987 Vega_transcript:OTTMUST00000118987 MGI_trans_name:Cspp1-020 OTTT:OTTMUST00000118987
definition	note : retained_intron note : transcript_id=ENSMUST00000191360

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118988 Vega_transcript:OTTMUST00000118988 MGI_trans_name:Cspp1-021 OTTT:OTTMUST00000118988
definition	note : retained_intron note : transcript_id=ENSMUST00000191521

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118989 Vega_transcript:OTTMUST00000118989 MGI_trans_name:Cspp1-022 OTTT:OTTMUST00000118989
definition	note : retained_intron note : transcript_id=ENSMUST00000190063

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000067950 Vega_transcript:OTTMUST00000067950 MGI_trans_name:Cspp1-009 OTTT:OTTMUST00000067950
definition	note : retained_intron note : transcript_id=ENSMUST00000134716

name	1700047N06Rik (ENSMUSG00000102356)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118998 Vega_transcript:OTTMUST00000118998 Clone_based_vega_transcript:RP23-228G18.5-001 MGI_trans_name:1700047N06Rik-001 OTTT:OTTMUST00000118998
definition	note : TEC note : transcript_id=ENSMUST00000194474

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000155974

Reports
substitution
cSNPs	1
Insertion	24
Deletion	34
SNPs	-1kb 10035240(c.-9846G>A), 10035413(c.-9673G>A), 10035424(c.-9662G>C), 10035466(c.-9620T>C), 10035595(c.-9491A>G), 10035684(c.-9402A>T), 10035731(c.-9355C>T), 10035733(c.-9353C>T), 10035840(c.-9246C>T), 10036015(c.-9071C>A), 10036040(c.-9046C>T), 10036053(c.-9033C>T), 10036157(c.-8929T>C), 10036294(c.-8792T>C), 10036328(c.-8758C>T), 10036374(c.-8712T>C), 10036420(c.-8666T>C), 10036430(c.-8656G>C), 10036446(c.-8640G>A), 10036621(c.-8465C>T), 10036688(c.-8398C>T), 10036808(c.-8278C>T), 10036900(c.-8186A>G), 10036985(c.-8101C>T), 10037121(c.-7965T>A), 10037160(c.-7926T>C), 10037194(c.-7892C>G), 10037213(c.-7873G>C), 10037246(c.-7840A>G), 10037289(c.-7797T>C), 10037305(c.-7781A>C), 10037307(c.-7779A>G), 10037582(c.-7504A>T), 10038028(c.-7058G>C), 10038034(c.-7052C>T), 10038102(c.-6984G>C), 10038325(c.-6761A>G), 10038490(c.-6596T>C), 10038516(c.-6570A>G), 10038517(c.-6569G>A), 10038557(c.-6529G>C), 10038783(c.-6303G>T), 10038797(c.-6289T>A), 10038886(c.-6200G>T), 10038935(c.-6151A>C), 10038986(c.-6100G>A), 10038994(c.-6092T>C), 10039009(c.-6077C>A), 10039152(c.-5934C>T), 10039181(c.-5905G>A), 10039359(c.-5727T>C), 10039456(c.-5630C>A), 10039555(c.-5531T>C), 10039587(c.-5499G>T), 10039626(c.-5460T>C), 10039712(c.-5374C>A), 10039825(c.-5261A>G), 10039840(c.-5246G>C), 5'UTR CDS 10047432(c.108G>A), 3'UTR 10040262(c.-32G>A), INTRON 10040330(c.-11+47T>C), 10040357(c.-11+74C>T), 10040400(c.-11+117G>T), 10040527(c.-11+244G>A), 10040529(c.-11+246G>C), 10040575(c.-11+292C>G), 10040625(c.-11+342A>G), 10040716(c.-11+433A>G), 10040891(c.-11+608C>T), 10041050(c.-11+767G>T), 10041220(c.-11+937A>G), 10041313(c.-11+1030C>T), 10041491(c.-11+1208G>T), 10041532(c.-11+1249T>A), 10042128(c.-11+1845C>T), 10042129(c.-11+1846C>T), 10042330(c.-11+2047T>C), 10042372(c.-11+2089A>G), 10042379(c.-11+2096T>A), 10042387(c.-11+2104C>T), 10042778(c.-10-2298A>T), 10042798(c.-10-2278C>T), 10043142(c.-10-1934T>G), 10043145(c.-10-1931C>A), 10043163(c.-10-1913T>C), 10043210(c.-10-1866C>A), 10043307(c.-10-1769G>A), 10043360(c.-10-1716G>C), 10043416(c.-10-1660T>C), 10043486(c.-10-1590A>T), 10043551(c.-10-1525T>C), 10043607(c.-10-1469C>G), 10043623(c.-10-1453T>A), 10043820(c.-10-1256A>C), 10043857(c.-10-1219G>C), 10043944(c.-10-1132G>T), 10043995(c.-10-1081G>A), 10044039(c.-10-1037A>T), 10044218(c.-10-858T>C), 10044264(c.-10-812T>C), 10044265(c.-10-811C>T), 10044301(c.-10-775T>C), 10044381(c.-10-695T>C), 10044394(c.-10-682A>G), 10044410(c.-10-666T>G), 10044424(c.-10-652T>C), 10044439(c.-10-637C>T), 10044481(c.-10-595C>T), 10044517(c.-10-559A>T), 10044617(c.-10-459T>A), 10044649(c.-10-427A>T), 10044674(c.-10-402A>T), 10044703(c.-10-373T>C), 10044735(c.-10-341T>G), 10044740(c.-10-336G>A), 10044814(c.-10-262G>A), 10044875(c.-10-201A>G), 10044893(c.-10-183T>G), 10044896(c.-10-180T>A), 10045000(c.-10-76G>A), 10045203(c.99+19G>T), 10045206(c.99+22T>C), 10045208(c.99+24A>G), 10045225(c.99+41A>G), 10045246(c.99+62T>C), 10045300(c.99+116T>C), 10045342(c.99+158T>G), 10045402(c.99+218G>C), 10045419(c.99+235C>T), 10045564(c.99+380A>C), 10045581(c.99+397A>G), 10045585(c.99+401A>G), 10045589(c.99+405A>T), 10045601(c.99+417G>A), 10045638(c.99+454C>T), 10045726(c.99+542C>T), 10046011(c.99+827G>C), 10046082(c.99+898G>A), 10046144(c.99+960G>T), 10046323(c.100-1101A>G), 10046446(c.100-978G>A), 10046475(c.100-949G>A), 10047056(c.100-368G>A), 10047106(c.100-318C>T), 10047162(c.100-262C>T), 10047542(c.202+16C>T), 10047548(c.202+22A>G), 10047901(c.202+375C>T), 10048711(c.202+1185A>G), 10048959(c.202+1433G>A), 10048995(c.202+1469T>C), 10049267(c.202+1741T>C), 10049397(c.202+1871C>T), 10049436(c.202+1910G>A), 10049747(c.202+2221G>T), 10049771(c.202+2245G>A), 10050010(c.202+2484C>T), 10050450(c.202+2924C>T), 10050483(c.202+2957T>A), 10050518(c.202+2992A>G), 10050768(c.202+3242A>G), 10051046(c.202+3520G>T), 10051051(c.202+3525T>C), 10051057(c.202+3531A>G), 10051142(c.202+3616G>A), 10051215(c.202+3689G>C), 10051670(c.202+4144T>C), 10051789(c.202+4263T>C), 10052104(c.202+4578A>C), 10052961(c.202+5435C>T), 10053068(c.202+5542G>C), 10053093(c.202+5567C>A), 10053116(c.202+5590C>T), 10053162(c.203-5558G>A), 10053165(c.203-5555G>A), 10054291(c.203-4429C>T), 10054406(c.203-4314A>T), 10054412(c.203-4308A>G), 10054463(c.203-4257T>C), 10054547(c.203-4173A>C), 10054562(c.203-4158T>G), 10054683(c.203-4037C>T), 10054707(c.203-4013G>T), 10054747(c.203-3973C>T), 10054824(c.203-3896T>C), 10054869(c.203-3851T>A), 10054896(c.203-3824C>A), 10054997(c.203-3723G>A), 10055011(c.203-3709A>C), 10055133(c.203-3587G>C), 10055346(c.203-3374G>A), 10055429(c.203-3291C>T), 10055484(c.203-3236T>G), 10055545(c.203-3175A>G), 10055682(c.203-3038C>T), 10055711(c.203-3009C>T), 10055762(c.203-2958T>C), 10055800(c.203-2920C>G), 10055934(c.203-2786T>G), 10055940(c.203-2780A>G), 10055964(c.203-2756T>C), 10055968(c.203-2752A>G), 10055969(c.203-2751C>T), 10056043(c.203-2677C>A), 10056091(c.203-2629G>A), 10056095(c.203-2625G>C), 10056097(c.203-2623T>C), 10056122(c.203-2598T>C), 10056126(c.203-2594C>G), 10056183(c.203-2537C>A), 10056205(c.203-2515C>T), 10056231(c.203-2489A>G), 10056350(c.203-2370C>A), 10056443(c.203-2277A>G), 10056618(c.203-2102A>G), 10056676(c.203-2044A>G), 10056724(c.203-1996G>A), 10056750(c.203-1970A>G), 10056790(c.203-1930A>C), 10056947(c.203-1773C>T), 10056984(c.203-1736T>C), 10057053(c.203-1667A>T), 10057106(c.203-1614T>C), 10057112(c.203-1608G>T), 10057141(c.203-1579G>A), 10057455(c.203-1265T>A), 10057485(c.203-1235C>G), 10057602(c.203-1118T>C), 10057855(c.203-865A>G), 10057900(c.203-820A>G), 10058071(c.203-649G>T), 10058229(c.203-491C>T), 10058327(c.203-393C>T), 10058407(c.203-313T>G), 10058554(c.203-166T>G), 10058640(c.203-80C>A), +1kb 10059025(c.202C>G), 10059030(c.207T>C), 10059053(c.230A>C), 10059069(c.246A>G), 10059079(c.256A>C), 10059091(c.268T>G), 10059098(c.275A>C), 10059147(c.324A>C), 10059153(c.330A>G), 10059168(c.345G>C), 10059199(c.376A>C), 10059202(c.379A>C), 10059987(c.1164C>T), 10060157(c.1334T>G), 10060514(c.1691A>G), 10060556(c.1733C>G), 10060806(c.1983C>T), 10060901(c.2078A>C), 10061043(c.2220A>G), 10061171(c.2348A>G), 10061563(c.2740C>T), 10061575(c.2752T>A), 10061583(c.2760T>G), 10061882(c.3059A>G), 10061942(c.3119A>G), 10061966(c.3143A>T), 10061974(c.3151C>G), 10062019(c.3196C>A), 10062061(c.3238A>G), 10062119(c.3296A>G), 10062178(c.3355A>G), 10062210(c.3387C>G), 10062238(c.3415G>A), 10062263(c.3440T>A), 10062270(c.3447T>C), 10062460(c.3637T>G), 10062860(c.4037T>C), 10063024(c.4201C>T), 10063522(c.*4699T>C),
Insertions	-1kb 10035813 (c.-9273_-9272insGAGGCAGGC), 10037130 (c.-7956_-7955insA), 10038448 (c.-6638_-6637insT), 10038774 (c.-6312dupT), 10039101 (c.-5985_-5984insCTT), 10039721 (c.-5365_-5364insG), 10039725 (c.-5361_-5360insG), 5'UTR CDS 3'UTR INTRON 10040401 (c.-11+118_-11+119insA), 10042916 (c.-10-2160_-10-2159insC), 10044558 (c.-10-519_-10-518dupTT), 10045062 (c.-10-5_-10-4dupTT), 10046044 (c.99+862_99+863dupTA), 10046657 (c.100-766_100-765insACTC), 10049550 (c.202+2066_202+2067dupGA), 10053134 (c.203-5584dupT), 10053901 (c.203-4818_203-4817insCA), 10054252 (c.203-4467_203-4466insTA), 10055586 (c.203-3128dupT), 10057304 (c.203-1413_203-1412insATTTTAT), 10057637 (c.203-1085_203-1083dupCTT), 10058408 (c.203-312_203-311insT), +1kb 10062076 (c.3253_3254insC), 10062151 (c.3328_3329insC), 10062326 (c.3503_3504insG),
Deletions	-1kb 10035785 (c.-9300_-9297delAGAG), 10035910 (c.-9175_-9174delAA), 10036577 (c.-8508_-8507delAA), 10037233 (c.-7852_-7849delCCAA), 10037334 (c.-7751delA), 10037354 (c.-7731_-7728delAACT), 10038805 (c.-6280_-6278delTCA), 10038810 (c.-6275_-6273delATC), 10039471 (c.-5614_-5607delTCGAAACA), 10039649 (c.-5436_-5429delCAGCAGCG), 5'UTR CDS 3'UTR INTRON 10041352 (c.-11+1072delC), 10041462 (c.-11+1181_-11+1186delTTGTTT), 10041940 (c.-11+1660delC), 10042460 (c.-11+2187_-11+2190delATAG), 10042968 (c.-10-2107_-10-2104delCCCC), 10043567 (c.-10-1504_-10-1502delTTA), 10043937 (c.-10-1137_-10-1132delACATTG), 10044331 (c.-10-741delT), 10044564 (c.-10-511_-10-509delAGG), 10045372 (c.99+192delA), 10046485 (c.100-938_100-930delCAAAGGGAT), 10049952 (c.202+2436delA), 10051335 (c.202+3810_202+3811delGA), 10051374 (c.202+3857delT), 10051381 (c.202+3856_202+3857delTT), 10054992 (c.203-3727_203-3726delAT), 10055868 (c.203-2838_203-2836delCTC), 10057289 (c.203-1430_203-1429delAT), 10057649 (c.203-1070_203-1067delAGAG), 10057784 (c.203-933delA), +1kb 10060464 (c.1642delA), 10061556 (c.2734delT), 10061778 (c.2956delA), 10061854 (c.3032delC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	10047432 (p.Ala36Ala),
non-synonymous substitutions
B6 transcript (ENSMUST00000155974)	MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQ
MSMv4 transcript	MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQ
homology	100.00 (102 / 102)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000155974

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CTAATGCAGGTGCTTTTGCCTGGGCTACAGGAGACCCTGTTTCAAAAAGT CAAGGAGCTGGGCAAACAAAACAGAGCAAGGACATTGCAACATTCTTCTAATTCCAGTAC TTGGGAGGTGGAGAATGGAGAATCAAGAGTTCCAACCCCGCTTTCTCCCTGGACTATTGG AGACAAAATAACGAAACCAAAAATAAAAATAGAACCTTCTTAAAGTATAACTTCGGGCAC ACTAGGGACATTAGAGTACATTAGTATCTTAAGTTCTTTCTGAGAAGCTTGTGTAAGCTT GTTCCAGTGGTAACAATACACAGCCACTCGAAACATACAGAATAACATGTTGAAATGGTA ATGAAAGCCCAGGACAGAGAGTTGACCAGACTGCTGGTGCGGACATTCCTCCTCTCACAT CCACACTTCGTGACTGGAGACCTTCCTGGGCTTGGATGGCTGGGATTTAGCCTGGGAGTG GCCACATTTCAGGAATCCCTGGGCGCAGCAGCGGGTGCACCGGGTGGCCTCCGGGGCTGC AGGGGGCGCCCTCGGCCGCGCGGCCTCCGCCAGCAGCCCGAGGGGCGGGGCCGCGCCTGG CCGTTGGTGGAGGGCGGGCGGGGGGCTGGGCCTGGGAGGCGGAGTCCTGAGCGGGCGACC GGTTTTTAGGTCCGCGCCGGGGTCGCCGGAACCACCGACTGTGGAGCCCGCTGGGAGCGT GGCTTCTCGCTGGGAGTAAGTCGGTGGGTAGCGGGTGTGGACGGCTGTGCGAAGAGTCGG CGCCCTGGCGCGGGAGGCCGGCCCGGGTCGCTGTAGCCGGGCGGGGGTTCGAGCCTGCCG GGCGGAGCCGGGAAGCTCCGGGGTGTTGTGGGGGCAGGGCTTGAGGCGCGGGTCGCGAGG CGGTGGCCCGGCTTGGCCCCAGGTGCTGGTCTCGAGGCTGCCGGGCTGGGGGCGGTGCCC TGCACGCGCGCTGCAGACTCCCGGGCGGCCTCTGGGCCCGCCGGTTGCCT
1	EXON 1	10,040,155	10,040,283	-	-	129	GACAACGCGTTGACGCTTTCAGAGGCATCTGCCACCCGCTGCGTCTCTGGAGACCTTAGT GGCTCTCCTGCGCCTTCTCTTCTGCTGGCGCATCGCTGCTAAGCCTCACAGAGTGCTTGC ACCCGGAGG
	INTRON 1 - 2	10,040,284	10,045,075			4,792	GTTGGTTAATGTTTAACACTTTGCA..........CTCACTGAAGACTTTTTTTTTTCAG
2	EXON 2	10,045,076	10,045,184	-	0	109	AATCTACAAAATGGCAGATAGCTTGGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGC CAAAGACAAAGCAGAATTGGAAAGTGATCCACCGTACATGGAGATGAAG
	INTRON 2 - 3	10,045,185	10,047,423			2,239	GCAAGATTAGTAATTGTCTTGCAGT..........TGATTTGTAAATATGTCTTTTCCAG
3	EXON 3	10,047,424	10,047,526	0	1	103	GGAAAGGCATCAGAGAAACTCTCTGAAAACAGTAAAATATTAATCTCTATGGCTAAGGAG AACATTCCACCAAGCAGCCAACAACAGCCCAAGGGACCCTTAG
	INTRON 3 - 4	10,047,527	10,058,719			11,193	GTATGGTACTGTATGTGTGGAGCTA..........CGACTTAAGCTGTTTTCTTTTTTAG
4	EXON 4	10,058,720	10,058,823	1	-	104	GAATTGAATATGGCTTAAGTTTACCGCTTGGAGAAGATTATGAACAGAAGAAACATAAAT TAAAAGAAGAATTGAGGCAAGATTATAGACGATATCTTACTCAG
	3' upstream sequence						GTAAGTTGTTCTGTTAGTGAGTTGTATTTTGTCTATTTAAATTTATTCCTAAAATTTACT TTTGAGAAGTGTTGATCATGGGTGATATTTGGCCAACTAGTGAAAAATAAATTCTTGGTG GAAAAATGTGAAAACGTGTGTTGTGGAATAATAAACTCTTCCTGGAGCAACAAGGCCTTG GGTTTAGTCTCTAGCACAGGAGGGTGCTTTACTAGGGAAATGGATTTTACTATTAAAGGA GATTAGCAGCTGTTACACAGTGGTTGTGTCTGTACAGCTATCTTTGTCTAAAGAAGCATA TCCACTATTCCCCACGATGTATTCAAGTGGCCTGAAGGGTTTTACATAGTAATTACTTTT TCTTTTGATAAGTGTCTACATTTTCTGTTTACAGTTTTATTAACTACTACATTCCATCTT TTTTTTTTTTTTTTTTTTTAATCACTGTGACAAAGTATCCGAGAAAAACAGTGTGAGAGA AAAGATTTTAGAGGTGCAGTCTGCGTCAGCTGTGGGCCTGTGGTAGGGACATTCTACCGA ACAAAATAATATCATGGCCAGCAGCAAGGGTCTGGATAAGAAACAGCCCCCATTGATGAG TCCTCTTGCTCCAGCATGACTAACCAGTTCCCAACACCTTCCAACATATTGCCAGTAGCT GGAGGTCACCTTCAGCAGGAGCCTTTTGGGACATGTCATAGTCAGATCTTAACAGCTCTA ACAGCTTTGCTTTATGATTTAATAGTTTTATTTAGGAGAACCCCTTTGCAATTATCAAAT TATCTATTAATAGGCTTATGATTAGGTTTTACAATGTAGTTTCCTTTATAAGTTATAAAA ATACGTTAAGCAATCATGATTCTGGCCATTCACAATACTCTTGGCTTTTCCATTGCTTTA TAAATACTTGCTTCAAACTGTCTTTAACTGACTGTCATTGGAAAGGACAGACTTTACTGA ACACATGTTATCATCAATGGTTTGTTTCTCTCCACTTTAG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000155974

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 102 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information