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Target CDS Information

Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Cross Reference
EMBL AK148653
Fantom 7120430G17
MGI_trans_name Plekhb2-002
OTTP OTTMUSP00000068303
OTTT OTTMUST00000073323
protein_id BAE28632.1
RefSeq_mRNA NM_175421.1
RefSeq_peptide NP_780630
UCSC uc007apk.2
UniParc UPI000034E5CB
Uniprot/SPTREMBL Q3UFC9
Vega_transcript OTTMUST00000073323, Plekhb2-002
Vega_translation 178936, OTTMUSP00000068303
Definition protein_id:ENSMUSP00000140475
translation:
MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH
ECRDIQPPDGKPRDCLLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSAILS
EETAVAASPPPYAAYATPTPEVYGYGPYSGAYPAGTQVVYAANGQAYAVPYQYPYAGNAR
WLPLPVSAYSGARRRRPPFQLEVK

Chromosome 1
Length
Position(start - end)
7,609
34,861,881 - 34,869,491
Orient to Chromosome plus
Link Location : (1:34861881-34869491)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Transcript ID ENSMUST00000156687
Reports
substitution
cSNPs5
Insertion22
Deletion29
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num0
synonymous substitutions 34863118 (p.Pro50Pro), 34863139 (p.Arg57Arg), 34866185 (p.Ala126Ala), 34866203 (p.Tyr132Tyr), 34869446 (p.Ser190Ser),
non-synonymous substitutions
B6 transcript
(ENSMUST00000156687)
MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH
ECRDIQPPDGKPRDCLLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSAILS
EETAVAASPPPYAAYATPTPEVYGYGPYSGAYPAGTQVVYAANGQAYAVPYQYPYAGNAR
WLPLPVSAYSGARRRRPPFQLEVK*
MSMv4 transcript
MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH
ECRDIQPPDGKPRDCLLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSAILS
EETAVAASPPPYAAYATPTPEVYGYGPYSGAYPAGTQVVYAANGQAYAVPYQYPYAGNAR
WLPLPVSAYSGARRRRPPFQLEVK*
homology100.00 (205 / 205)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Transcript ID ENSMUST00000156687
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGTAACAAATTTATTTACTGTTTCAGGTGTAAACACGGTGTGTGTTTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGGCACATGCATAAAGCTATAGGATGTATGACCCAC
CAACTCAAAGCTACCTAACAGCCCATCTGTCAATCAGGGCAAAGGGTCTACCTAATTTCT
ATGCAGGGAATCTGCTCCTCACTCTACTTAAACTCATAACGTTCCAAAAGGTCATGGGGG
TCTTGAGTCTTATGCTTGCTCAGGCCATTCCCATTCTGGGGAGTGTATTCCATGCATTTT
CTTTGTAAATAAATGTACCCTTTGACAACCTTTATTCTGTGTTGTGCAAGTCATTGTTTG
AGACACTAAGAACCTAGAAAAAGCCTGGGATACACAAGGCACTATAATTAAAAGAGTATT
TTTTTTTCCTTAGACTGACCTTGAGCTCACTACCTAGCTAAAGATAATCTTGGCCTTCCT
TTATATCTTCTTACCACATCTTTCAAATGCTGAGATTACAGCTGTGTACTGCCATGTTAT
GTAGCCCAAGCTGCCCTCAAATTTATTATCCTCCTGACTAAGCCTCCCCAGTACTGAGAT
TACAGTCCTACTAACACCCCCCGGCTCCTTCCTCATTTATTTTTTTATCCTTATATTTTA
TATTCTAAGCTATAACATTTCTATGTGAGTTATTGCTAAGACTTCCAATTTTGTTCCTTG
ATTGCTGTTTCAGTTTTGACATCTCCATCTTCCTGGTTTTTAAGCCTGCAGGTCTTCATT
TCTGGCTCTGAGAGGTCCCAGGTTCAGTTTGCCCTTGGCTTGTCCCCATTCCCGCTGTCA
CGCTTTTCTCTACGAAGCTCTGTGTTTAGAGGCCAAGATCAAGAAACTTAGAACCACCTT
TGAGCAGATAACAGCCCAGGTTGAGAGCAACGCCTTGGCTTCGGCCCTGCACCCGGGTGG
CACCTGCCTTGCGCGCATGCGCATGGCTCGAGGCGGTGACGCAGGACCAG
1 EXON 1 34,849,976 34,850,063 - - 88
GACTCGCGCGTCCAGCGGAGAAGCAGGAGAAGCCGGCGACCTTGCGCTCTCAGCCTGATC
CCTGTCTTGGCGGCCTGAACATTCGCAG
INTRON 1 - 2 34,850,064 34,861,872 11,809
GTGACTGTGCCCGCGGAGCCCCCCT..........ACCCTGTCTGCTCTCTCTCCTGCAG
2 EXON 2 34,861,873 34,861,917 - 1 45
CTGGAGAGATGGCGTTCGTGAAGAGTGGATGGTTACTTCGGCAGA
INTRON 2 - 3 34,861,918 34,863,005 1,088
GTGAGTAGAGACATCTGAGAACCCT..........CCAACTCTCTCTGTGTGCCCCCCAG
3 EXON 3 34,863,006 34,863,158 1 1 153
GCACCATTCTGAAACGCTGGAAGAAGAATTGGTTCGACCTGTGGTCAGACGGTCACCTGA
TCTACTACGATGATCAGACTCGGCAGAGCATAGAGGATAAGGTCCACATGCCTGTGGACT
GCATCAATATCCGTACGGGGCATGAGTGCCGGG
INTRON 3 - 4 34,863,159 34,863,470 312
GTAAGCTGTGCCCAGGACCACCACC..........CCTCCGTTCTGCCTCTCTCTCCTAG
4 EXON 4 34,863,471 34,863,573 1 2 103
ACATCCAGCCTCCAGATGGGAAGCCCAGAGACTGTCTGCTGCAGATCGTTTGCCGAGACG
GGAAGACCATCAGTCTCTGTGCAGAGAGCACAGACGATTGCCT
INTRON 4 - 5 34,863,574 34,864,472 899
GTGAGTGCTCATTTGATTATGTGTT..........TACCCTGTTTTTTCATTTTTTCCAG
5 EXON 5 34,864,473 34,864,512 2 0 40
GGCATGGAAGTTTACACTGCAGGATTCCAGAACAAACACA
INTRON 5 - 6 34,864,513 34,866,140 1,628
GTAAGCTGCCCATGGGTATTCCAGC..........GTCCTAGCTCTCTTGTCTCCCACAG
6 EXON 6 34,866,141 34,866,230 0 0 90
GCTTACGTTGGTTCAGCAATCCTGTCTGAAGAGACTGCAGTGGCTGCGTCCCCGCCTCCC
TATGCAGCCTATGCTACACCAACCCCTGAG
INTRON 6 - 7 34,866,231 34,869,299 3,069
GTAGGGAGGTTTGAGCAGAGCATAC..........CTCATGGGACTTTGTCTCCTTCCAG
7 EXON 7 34,869,300 34,873,956 0 - 4,657
GTCTACGGCTATGGTCCATACAGCGGCGCATACCCCGCAGGAACTCAAGTTGTCTATGCC
GCCAACGGGCAGGCATATGCAGTGCCATACCAGTACCCGTATGCAGGTAATGCACGCTGG
CTGCCGCTCCCGGTCTCTGCGTACAGTGGGGCGAGGAGGAGGAGGCCTCCTTTCCAGTTG
GAAGTTAAATGAGCTGCACACTCTCACTGGAGACCCCAAATCACTTTGCCGCTCTGAGTT
TTGTGTATTTTTCTTCAAATAGTCTTTTGGGTTTTCACATATCTTTACAGTGCTAGAGTG
ATTTTTATTTAAAAACTATTACATTTTTATTGATTTTGTGTGCACTTGTTACACATATGT
GTGTGGGTACATGTATGTCACAGCCCATGAGGGAAGGCCAGAGGACAATTCAAGGAAATC
AGTTGTCTCCTAACACTGTGTGGGTCCCAGAGTTTGAACTTGGGTTGTCAGATTGGCCCC
ACTAAATTATCTCTCCAGCCCAGTCTTTGATTATTTAAAGGTTTTAGTAATCTTTATTTA
AAATGTAACCAAATATACCTTAGTTGCTTACATTTCCTGTATGTCACTCAATTTAAACAT
TTTTTAAAAGATTTAGTTTTCCCTGTGTGTACCTGTCTGTAGGTGTGTGCACATAAGTGC
ATGTGCCTGTCGGGGCCAGAATAGGGCATTTGGTGCCTGGAACTGGAGTTATACATGGTT
GAGTTGACTTGTGGGTGCTGGGAACTGAAGCAGGGCTCTCTGGAGGAGCAGCAGGTGATC
TCACTGCTGAGCCGTCTCTCCAGCCCCCTTGCCAGTCAGTCTGAAACACTAGCAGCTCAT
GATAAGTAAGGAATAGTGTAATGAAAGCACACAACTTAGAAGGCATTCTGGTGGCACAGT
ACAAATCTACAGTAAGACTAAGGAGCCTGGGAGATGGTTCCGCAGGTGAAGTGCCTGCTG
TGTGAGCGTGCGCACCGGAGGTTACACATGCGCACTGAGATGAGATCCAGCGCCATGTAA
GAGCCATGTAAAAGCCAGACATGGCAATGTGCACCTGTGTCCCAGCACTAGGGATGTGGA
GACAAGAGGTTCCCTGGGGCTCAGTGGCAAAGGGTGCGTCTGCCACGCATGGCCTCTCAG
ATTCTTTCTATAGCTCCCAAAATAATTAGTTGTTGTTTAATGGGACATAGTTATACTTAA
AAAGTTATTTGTTATATGAAATTCAAACCAATGGTGTGTCTCTATTCTTATTTACTAAAC
ATGACAATTTTATTTAAATGCTTTATTTTTCTTAAGATTTATTTATTTTACATATATGAG
TATACTGTCACTGTCTTCGGACACACCAGAAGAGATCCCATTATAGATGGTTGTGAGCTA
CCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACT
GCTGAGCCATGTCTCCAGCCCTAAACTTGACAATTTTATACCAACAAGAAAGTTTAAAAT
CTAGTGAGATGTGATTTTTACTGCTGTTGGTATATGGGATTCTGAGGTGGGACCAAGGTC
CATGGGAAACCTGCTAGGGACCTTAGAGAATCCTTGGCCGGGCACTGCAGAAAATAAAAG
GCCCACATTGAAGTCTTTGGAACATTCACTCAGCTCTGTGCATGTGAACAACAAATACAG
AGAGTAAAGAATATAAAGTCTGAGGGTGAAGTTTAGTGCTTGGTGTATGTGAGGCTCTGC
ATTCAGTGATCAGCATTAAAAAAACAAACAAGAAAGCAACAAACAACCAAACAAGAACAA
AAGCAGTGAGCCAAATGGAAGGATAGAAACATCCATGCAAGGTATTAAAAATGGCTTTTG
GACATTTACATATCTTTCTGTAGCTAAAGTCCTTTTGATTTAATAGCACTACATTTGTAT
TTATTTCCTGTGCATGTGTTGTGTATGCGTGTGTGGGCGCATGTGTGCCACAGCTCGTGT
GGGGACGTCAGAGGACAGCCTGAAGGACAGCCCGCTGTTAAGGTTCTGTTGGGCCCGTGC
TTCAGAGTCCTGTGCAAAGCGAGTGTTCTCAGCTAGGGGATGGTCTGCTTTATTTCTTTG
GAATTGAGTCCTGAGGCTATGGCTCAGGTGGGAGAATCCCATGTAGTCTGAACAAACCCG
CAGCATGGCATAAAACCCAAGTGGCACAGTCAAGAGGATCAGAAGTTCAAGGATTTCTTC
AGCTGAGGCTGGCTTGGCACAGAATAAACAACAAAAGGAAGAAGAAGAAAAAGAAAGTCT
ACTTTATGAATACTTGATAGTTGTTTGCTTTGAGACAGGGTCTTCCTGCGCATCCCAGAT
TGGTTCTCGGCTTGAGTTCCTCCTCCCAGCCCCCTAAGTGCTGGGATTGTTTGTGTGAGC
TACTGTGCTGGGCTGTGTAGTAGTGAACGCTTGAACCTTACAAGCTGAAGTACAGGATCT
TGTTGGTTACCGCTGAAGCACGGGGTGAACAGAAACCAGGCTGTTTTCTTAGTGTTATAA
CTACACTTGTGCAGTGCAAGCTCAAGTCAGCTACTCCTGTCTGCACAGCCTTTCTAATCG
AAAGTGGGTCATTCTGTTCCAATAGCTGCTTTGAACTTATGCTCTTATCTCTCGGTTCTC
TTACCATCTCAGAACTGGAAATGATCTAGAAACTTTGTATCGAAGTATGTGTAGTCACCT
TGTGTTCTTTGCTTCTTCAAATAGAAATGCATTAGTCTCTCTATACATAGTTGAGGTGGT
TTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATCCTTGGACCCTAGGTGGT
AGCACTGTTTGGGGAGGTTTAGGGGGTGTGGCCTTGCTAGAGGAGGTGCATTACTCAGGG
CAAGCTTTGAGGTTTCAAAAACTTTGGACCATTTCCTGATAGCTCTCTGTTTCCTGCTCA
TGGTTGGGCATGTGAGCTCTCGCTGATCAGCTGCCATGCCTGGTGCTTGCTGCCTTGGTT
CCTTCTTGTGGTGATAATGAGCTCTTAACCCTTTGGAACTGTAAGCCCAAATTAACTCCT
TTCCATAAGTTGTCTTAGCCATGGTGTTTTTTGTTTTTTGTTTTTTTTATCACAGCAATA
GAATGGTAACTAAGGCAGGGAGTGGGCTATTGCTGTGACAGACCTGACTATATGTTGTTT
TGTTTTTGTTTGTTTGTTTTTTGGAAGACCGAAACTTTGACCTAGACATGTGGTTGGATG
TTATAAGCAGAGCTTAATGGGCCATCCCAGTAGGTTCTTGGAAGACAGTGCTGAGAGCGA
TGTGGTCTGCGGAGGCCCAGCTTGATAGGTTTCAGTGGGCAACAATATCTGCATCTGATA
TTGAGAATATTGCCTGCTCTTATTTTGAGATGTGAACTCTCCGCTGTTCCTCGTTCATAT
TGTCATGTTTTTCTTTCTGTGATGGCACAGACTCTAATCTCTCTGGATCCATAAACCCAA
ATGAGCCCGTCCTTCTCTAAGTTGTACTGGTCATGGTGATTTATCACAGCGACAGAGTAA
CTATGATGGTAATCTGCTACATTAAGACTGACCTTATTTGAATATCACATGGATCACCAC
AGGACATCAGGCAGGGTTGGCCTTTTGTTCATCATGGGTGTTTGCAAAAAGTGCAGAGAT
GGGTTTGGTGAGATGGTTCAATGGAGCATGCCCAACACCCACAAATAAATAAATAAATAT
TAAAGTTTTAAAGTGACAGAGTTTCAGGTGAGTGTCTATAGTGTGTCAGCTGAAATTCCT
TAAGCCTGCAAGAAACGCACTTGCCGTTTCCATGGTTTCTTGTGAGAAGAGTTCTCCCCC
AGGCCTCCCTTCTCTCTTGCTTTAAAAATTAAATTATGTTAAATTGTTTGTACACCTGTG
GATAATGTGCACATGGCCGAGGAGGCCTGAGGTTTCGAACCCCCCAGAGTTGGAGTTACA
GGCAGTTATGAACCCATCAACCTGAATACTGGAAACTGGACTCGGGTCCTTTACAAGAGC
CAGTGTGCACTCTGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACT
CTCAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAAGACAGTTCGA
CAGTTGTTGATAAGACTTTGGCATTAGGCTTCGCAGGGACTCATTACGAGTCAGAGCCAG
GGACTTGTGAGTCTTCCTTTGCTGATGGTTTAATCTGCTTCTTCCTCTCATTAATCTCCT
AGGCTTCCTTAATGTCTCCTCCAGTAGATCTCTTGCTATTACATGTATGGGCCACTCTTG
CTAATGGTCCAGCCTGGTGTGCTTTAATGGGACTGTGTTATTTGAGCAGAACAGCTGTTA
GTACTGGTGGAGGAGGAGATGGAGAAGGAAGTAGAGGCAGAGGCGGAAACAGGGAAGGCG
ACCGGTGAGGAGGCAGAGGTGGGGCGGTGGGCAGAGGAAGTGCAGGAGGCACAGGCTGGC
TGTGGCACCATGGGAGGAAGTATAGCTCAGAATTCTCCAAGCTACGGCACAGGTGGGCAC
ATTTGTAGCTGCATGCAGCACGTTTTAGCAATTTGGATAAGAAGATTTTTCCCAGGTGCT
CTTCTGGGTTTCTCGGAACTTTTATGATTCATTCTGC
3' upstream sequence
AAAAAAAAAAAAAAAAAAAAAAAAAAACCTAGGGAGATGCCGTTCTTGAGTGTAGATTAA
GGACATGGCGTTGGTGTCTGTCAGTGCCTCAGCGCCAAGTGTATGCACACCATATTCTTG
ACACTTTTTGACTACACCTTTGATGTTGGAACATTTGAGGCTCCCAGATAGCCTCAGTGG
GCTTCTCCTTTAGTGTGCATCAGTTGAAGAACTGACTGTGTTTTTTTGAGCCTGAGGTAT
GGTAAGGAAGATGTATCTAGCTCATACCGTGAGTGAGAAGTCTGTTTTTAATATTTTAGT
TTGGGCATGACTGAAGTCTAAAAGTCTGTAACAAAGTCATGGCAGTGACCACTCCCCCCA
AATTAAATCCTCAAGAGAGACCTGTCTTGACCTTAGAACTTCAGTAGTGTGTTCCAGCCG
GTGGGGAAGAGATGCCCTCAAACGCTGTGTGAGTGGGGTACATAGTGAAACTCGTTACTT
TGTAGACTAACCTAAGAACAAAGTTAACAAGCTGGATGTGGGCTGCTCACCTTCAATCTC
AGCATTTCAGAGGCACAGGCACCTGGGTCCCCGAGTTTCAGAGCAGTCTGGTGTACATGG
TGACTTCCAGACAAGTTGGAATACACAGGCTGTCTCAGCAAACAAACAAAACGAAACAAA
ACGAAACAAAACAAAACAAAAACCCAACCAACCAAAAAGAAAATGGCCAAGAAACCCATT
TTACGGATCAAGAGTGATTTTTCTCATGATGGTGTTTTCCTTCTGGTGACATCTTCGCAT
CTTTGTCACAACTGAGGAAATGCAGTGTGGTAACACGGAAGGGGATTTGGGAATACGTCT
CCCCACTTTGTACTTCACAGGAAGGAAACTTCAGATGGTGAGAAGCCAGTGTGGCTGCCG
TAAGCCCCCAGGTGCAAAGATGACAGGGGTGAGCCACCATGCTTGCCTGATGCCGCTTCA
TCTTCAAGCAGGCTTCCCCTGATTTCCCACACTCTTCCCC..........

Sequence Detail Report

Gene Symbol (Gene ID) Plekhb2 (ENSMUSG00000026123)
Transcript ID ENSMUST00000156687
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 205 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information