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Target CDS Information

Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Cross Reference
CCDS CCDS48211.1
EMBL AK003367, AK010474, AK010604, ...show all
Fantom 1110003K01, 2410012M03, 2410029F03, ...show all
GO GO:0000002, GO:0003735, GO:0005515, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0003735, ...show all
MGI_trans_name Mrpl15-001
OTTP OTTMUSP00000037453
OTTT OTTMUST00000072659
protein_id AAH21304.1, AAH27233.1, BAB22741.1, ...show all
Reactome R-MMU-1852241, R-MMU-5368286, R-MMU-5368287, ...show all
RefSeq_mRNA NM_001177658.1
RefSeq_peptide NP_001171129
UCSC uc007aff.3
UniParc UPI00000E7805
Uniprot/SWISSPROT Q9CPR5
Vega_transcript Mrpl15-001, OTTMUST00000072659
Vega_translation 178606, OTTMUSP00000037453
Definition protein_id:ENSMUSP00000115512
translation:
MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRERRPRDRRRGRKCGRGHKGERQRGT
RPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQL
VNGRGVTIQPLKRDYGVQLVEEGADTFQAKINIEVQLASELAIAAIEKNGGVVTTAFYDP
RSLEILCKPIPFFLRGQPIPKRMLPPESLVPYYTDAKNRGYLADPAKFPEARLELAMKFG
YVLPDITKDELFRMLSARKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYSS

Chromosome 1
Length
Position(start - end)
9,212
4,776,464 - 4,785,677
Orient to Chromosome minus
Link Location : (1:4776464-4785677)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Transcript ID ENSMUST00000156816
Reports
substitution
cSNPs2
Insertion18
Deletion24
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 4776569 (p.Pro261Pro), 4776734 (p.Pro206Pro),
non-synonymous substitutions
B6 transcript
(ENSMUST00000156816)
MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRERRPRDRRRGRKCGRGHKGERQRGT
RPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQL
VNGRGVTIQPLKRDYGVQLVEEGADTFQAKINIEVQLASELAIAAIEKNGGVVTTAFYDP
RSLEILCKPIPFFLRGQPIPKRMLPPESLVPYYTDAKNRGYLADPAKFPEARLELAMKFG
YVLPDITKDELFRMLSARKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYSS*
MSMv4 transcript
MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRERRPRDRRRGRKCGRGHKGERQRGT
RPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQL
VNGRGVTIQPLKRDYGVQLVEEGADTFQAKINIEVQLASELAIAAIEKNGGVVTTAFYDP
RSLEILCKPIPFFLRGQPIPKRMLPPESLVPYYTDAKNRGYLADPAKFPEARLELAMKFG
YVLPDITKDELFRMLSARKDPRQIFFGLAPGWVVNMADKKILKPTDENLLKYYSS*
homology100.00 (296 / 296)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Transcript ID ENSMUST00000156816
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCCAGAGACGTAGAACCAGACCAATGACTCACTGCACTGTACATTTGCAA
GTAAGAATGTATGGACAAAAGGGTATACTGTAGGACACACTGTGACACACGACAGCTTCA
CGATGAGGTTTCCTAAACTTTATTTTTATTTTTTGGGGCGGGGGGTTTGCAAGGGCAAAA
AGGACGGAGGGATTGTGGATCTGGAGTGTATGATGTGGAATTCACAACGAATCAATAAAA
TAAAAATAAAGGTTTATTTGAGTTAGAAAAAGCTGCTTATTAAATTGTCTCACCTTCACT
ATATAACTGATAGAGCTTGGTAGGAGCAATTCTCCAGCAAGACAGTGGAGCAGAAAAAGA
ATATAAAAATGAACACATTGTTTTCTATATTGCTTGTATTAAGACAAGTTTTAAAAATCA
TTTAATTTGGAGAGTTAAATATATGTTTGGCAGTTTAAGTTCATTAGCTTTGAATCCTAT
CTATACCATCTGCTGTGACAGCTGGGTCGATCTGATAGGCATAAAACCACACCTCGCTTC
TAGCATGGTTGTTTATATGAATCTAGTAAGGCTAACTTTAACTCAGTGTCTGGCATACCC
CAGGAGCTAAGTATGCCCCACCCCCCATCGTTAACTGCAAGGCACGCTATTAGGTTGAAC
CTAATTAGACAATTAATTCTAGAGCCAGGCACTGTAACAGTTGAATTATCAGAGTCTCAA
AGCTTGAACCTGTTCACATCATTTTGGATTACTCTTCGCTTCATGAGGCCCCACTTTTAC
CGCACAACGTGTTCAGTCATTACAGGGCAGAAGAGAACAGTTTTCGTTCACAAGATGGTA
CCCAAGCCAGAGGATAAAGCATGATCTCACAAAAGTTGATGCAGTTCCCCGAAGTAAAAA
GCCATCAAGCCTGGAAGCTGGAAGACACAGCCTACCGACCCTGATGCGGTCGCTCTGCAG
CACGACAGGGGCGGGGCAGTACGGCCGCTGCAGCGCGACAGGGGCCGGGC
1 EXON 1 4,785,573 4,785,739 - 0 167
GGAGCCGTAAAGCAACGCGGAGTCTACGCCGCTTCCAGGGCGCCCTTGAAGCACCGCGGG
TCATGGCTGGCACGGCGCGCGGCTGCGGGACCAGCCTGGACCTGCTGCGGTCCTTGCCGA
GAGTGAGCCTGGCCAACCTGAAGCCCAGTCCTAACTCCAGAAAACGG
INTRON 1 - 2 4,784,106 4,785,572 1,467
GTAAACGCTTGGCGGCGGTGCGGGG..........TCTTAAAACTCACTTTTTCTTGTAG
2 EXON 2 4,783,951 4,784,105 0 2 155
GAAAGACGTCCAAGAGATCGGAGAAGAGGTAGGAAGTGTGGCAGAGGCCATAAAGGAGAA
AGGCAGAGAGGAACCCGGCCAAGGCTGGGCTTTGAGGGAGGGCAGACTCCATTTTACATA
CGAATCCCAAAATATGGATTTAATGAAGGACATAG
INTRON 2 - 3 4,782,734 4,783,950 1,217
GTAAGGTTGTTTTTTTTTTTTTGTT..........TAATTATTACATTCCTGCTTTGCAG
3 EXON 3 4,782,568 4,782,733 2 0 166
TTTCAGGCACCAGTATCAGCCTTTGAGTCTCAGGAGACTACAGTATCTCATTGATTTAGG
TCGAGTTGATCCAACTCAACCTATTGACCTAACCCAGCTTGTGAATGGGAGAGGTGTGAC
CATCCAGCCGCTTAAGAGGGATTATGGAGTCCAGCTGGTTGAAGAG
INTRON 3 - 4 4,777,649 4,782,567 4,919
GTAACTCTAGATTGGATTTTGTATG..........TTTTTTTTTTTTTTTTTTTTTACAG
4 EXON 4 4,777,525 4,777,648 0 1 124
GGTGCTGATACTTTTCAAGCAAAAATTAATATTGAAGTGCAGCTGGCTTCAGAATTAGCC
ATTGCTGCCATTGAAAAAAATGGCGGTGTTGTTACTACAGCCTTCTATGACCCAAGAAGT
CTAG
INTRON 4 - 5 4,776,802 4,777,524 723
GTAAGTGTTCTCTGGTCGGTTTAAG..........CTCTTTCTAAAAAAAATCTTTTTAG
5 EXON 5 4,773,211 4,776,801 1 - 3,591
AAATTCTGTGCAAGCCTATTCCATTCTTTCTGCGGGGACAACCAATTCCGAAAAGAATGC
TTCCCCCCGAGTCACTGGTGCCCTATTACACCGATGCAAAAAACCGGGGCTACCTGGCTG
ACCCTGCCAAGTTTCCTGAAGCAAGACTTGAACTCGCCATGAAGTTTGGCTACGTCCTTC
CTGATATTACGAAAGATGAACTCTTCAGAATGCTCAGCGCTCGGAAGGATCCAAGGCAGA
TTTTCTTTGGTCTTGCTCCTGGCTGGGTAGTGAATATGGCAGATAAGAAAATTCTAAAAC
CTACAGATGAGAATCTTCTCAAGTATTACAGCTCCTGAACTGCCTTCTACTAAATCAGAC
TTGTGAGCCAGACGGGCTGCACATGGATTCTTGTGGGTATTAAAGCTTTGGGTCTGTTAC
CAGCCTTCACTGCTCAGGTCTTTTGTTCTTTTTCCGTCTTAAATAGCAGACAGCAAAAGC
TGCACGAGCGACTGAGCCTTTGAGGGTGTGTGCTTGAAAATCTGAACAGTGGCAGGCTTT
AGAAAGGGGATTAAAAAGAAAAAAACCTACTTAAAATTACCTTTCTTTTGGGGGGTGGGG
AGACTGTGTTTTGATACATGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTGTTCTG
TAGACCAGGCTGGCTTTGAACTCACACAGTTCCGCCTGCTTCTGTTGGGATTCAAGGCAT
GTACCGCCACTGCCCAGCCTGACTAAGTAGTTTAAAACATTTCTTTACTGTCCATCTTTT
CATGGACTTTTCTTACCTACATTTTCTGTTTTGTCAGAGTGCAGGGCACAGATTGATTAG
TAGGCCTGGAAGCCTTTACTGTTCGGGGACTTAAACTGGGTCCTCTTGGTCTTCTGTTGT
TTAAGACATCAGACAAGTCCTTTAGCTGAAGTACAGTGTCAGTCTGCAGCAATAGGAAAA
GAGACTGCAGAGTCGCTTTCCTACCATGTCTTTGCAGTCTAGAGGTTGGACCTGTGCTGT
ACATACTGAGTGACACTGCCCTTTGGCTCCAGCTTCTGGGGGGCCCCTGAATGACACATG
CTTCCTTGATCTGAGGAGAACTTTGACCATAGCCTATCTGCATAGAAATCAATTTCCTTA
AATGAACACGTCCTGTATTGTAACTGTATCGGGTGTGCACACATCCTGTAATGTAACTGT
ATGGGGTGTGCTGTAGCCCGAGGAAAGCTATTGCCTTGCCGCCTAGTTGTGCAGGAGGCT
TTCCTTTGGTGCTGCAGTGTACATTTGCAGGTCTCAGAGCCCCTGCCTTCCCAGGAAGAC
TTCTTCATGGGAAGTGAGAGGAAATTAGTCATCTGAAGGGAGAACACATTGCGGCCTTCC
ATCTCAGAATGTACTTTGCGGGTTCTTGGAGTCTCCTCCCCCATCCCTTCAAGCAGAGTG
GCTACCTCACATAGAAGAACTGACAGCCAAACATGGGCTTTCTTCATTTTGGTTGTCTGT
GGTGGCATACAGGTGGAAGGAAATTGGCATAGAGTGATAAAGGGAAGAATAAAAACAGGA
AACAGATGTCTGGTGAAGTAGAATGCTGGCCAGTGTTTATTTGGTGACAGGGACTTTGTC
ACAAACAGCTGTATCCGGGTTGAGAGACTATCCCTACAGCTCATTCTCAGCCAAAATAGC
GCCTTCCATGGAATTCACGTGGTCCACTCTAGTCCTTGTGCCAGTCACAAGGCGTGGAGC
GCTCCAGTGGAGGTGGTAGCAGTTTGTATCCCTTGAGACTCTACCTTAAAAAGCAATAAG
TCTTGAGTGTAGGTCTGTCCTTCCTGGAATGTGGCCTCAGCTTTCGCTGTGCACACATCC
TGTAATGTTACTATGGGGTGTGCTGTAGCCCAAGGAAAGCTATTGCCTTGCCTCGTGCAG
GAGGCTTTGGTGACCAAACTCTAAAAACACTTGAGTTAGTGTTTTAAAACAATTTTTATT
GCCAGGCATAGTTAGTTGTACACGCCTTTAATCTCAGCTCCCAGAAGGCAGAGAGGCAGG
TATATCTCTGAGCTTAAGGCCAACCTGCTCTATAAAGTGAGACCCTGTCTCCAAAAGCCA
AAGCAAACAGCAGACAGTTCTAGAGTTCGGAGACAGATGGGCAAAGGGTTGAAGTTTAAA
CTTTAAAGCGTTTGTGAGCCACACAGAAGCTTGGGCATCAGAAGAATGGTCAGATACCTC
CAGGCTCAGTGGCCAGCCAGTTTAGCTGCATGGTAGCTCACAACCATCTGTTTTCCCAAT
TCCAGGGCACTTGATGCACTCTTCTGACTTCCATGGATTTTCGGCAAGACACTCAATACA
CATAAAATAATAAAAAAGCCATTGAGAAAAGACATCTGACCAGCATCTGGCCTCCATGTG
TGCCTGCATCTGGTCTCCATGTGTGCCTGCATCTGGCCTCCATGTGTGCCTGCATCTGCC
CCCACATCCCATTTCTAAAGTAAGAGGGAAACTTTTGTTATGATCTGAGTCCATGGTCTT
TTTTTTTAATTGTAAGTCTTTACAATTTTCTTTGGGAAGTAGAAGGTCCTTCTTAGGGTG
GGGAGTGTCAGACGGGACCAGTACTCGTTTCACCTAGGGTGGAGGAGAGAGCTCTGATGT
TAGTGTGAGTCCCATGACGGTTGTCTTTCGTGATAACTTGCTGTAGGCAGACCACTACAC
TCTAGCTTGCTCGTTACATGCTTGGAGCTGCACAGCCATCTGGGTGAAACACTTGAGTAG
GACTTTAAGCAAGACTAGATTTGGGACTTTGGCATGCAATTTATTCTCTGCCTCTGTTTC
ACCATCTGCTAAATGGAGGGTAAAATAAAAATTTGGTAATTATAAAATACAAATTCTCTT
AGGGATTTTACTGCTATAACCAGCACCATGACCAAAAGCCAGTTGGGAAGGAAGATTATT
TGGCTCACACTTCCGTAACACTGTTCATCAAGGAAGGAAGCCAGGATAAGAAATCAAACA
GGGCAGCAGCTCATGTAGAGACCATGGAGGGTGCTGCTTACTGACTTGCTCCTCATGGCT
TGCTCAGCCTGCTTCCTTATAAAACCCAAGATCACCAGCCCACAGATGGCACCACCCACA
ATGGGCTGGGTCCTTCCCCATTAATCATTAAGAAAATGCCCTACAGGTTTGCCTACAGCT
GGATTGTACGGAGGCATTTTCTTAATTGAGATTCCTTCATTTCAGATGACTGTCGAGTTG
ACATAAAATTAGAACAGTTATTATGCAAGTCGCTAGTGTTTGTAAAGCATGTAGCACACG
CCTGTTTCGTAGGCCTCTAGAGTTAGTGTCTCTTCTGATCTTTAGGTAACTGCCATCCTG
TGGATTCTACTTCCTTCCCTCTTAGGATTTACATATAGTCTGTAAAGCACTCTTGAGTCT
CACTAATGAGAAGAAAATGCATGATAGACTTTATATTGTTTTTAGCAGGAGCTAAAAAAT
ACATTTTGAAGAAGCAGCATAGCAGAGGCAGAAACACAGCACCAAAGTCTGAAACAATTG
GCTCCAGTCTTCCCTTCTGCAGTTTGTTCAATAAACAGAATTCCTAGATCT
3' upstream sequence
AATAACCTTAAAACTCTCCCTCTTCTTCATACAGATAAGGGACTTACAGAAATTAGTAGG
GGCCTGCGGGATGGCTCTTCAGGTAAAGGGCCCTAATGTATATAGCTGATTTTATTCTCA
CCAACTAAAACTAAGATTCATAGACCTTTCGAAAGATATGTAAGCATCAGTAGTTTCAAT
TTCTCATATTTGGCAATGTATTCTACACTGTGTAAAGGATACGCACATGGAAAACCAGTC
TGGACATCCTAGTAACAAAATGACAATGAACATTATGGGCCAAAGAGATGACTTAGTGGT
AAACAGAGCTTGCTGTACAACAGTGAAGACCTGAGTTTGAACACCCACCACCTACATAAA
CAGTCGGCCATAATTGCATATGCCTGTGACTTGAGCACTGTGGAGAGTGAATCCAGGATG
CTCTGAGGCTTGGGGGTCACCAACTTAGTCAGAAACGGCCTGTGTGACACCAGACATCCT
CATGTGCTCTCTGCACACATGGAAATGTGTGCATTCACCCACGTGTGTACACATACATGT
ATTCCCTTCTTCAAAATACATTTTTTGAAGAATTTAAATTTATTATTCAAATTTAATTAT
TTTAAAAGCTTTCATTTTTTTACTCAAAAGAAAACTAATTCTATTTATTTATTTATTTAT
TTATTTATTGGTGGGAATCCCCTTTATTCCTTATCAAAACAATTAAACAGCAAATGTAGA
TAATATACTTCTTAGACACATAAGTTATCTTCTGTGGGGGCATTCTTATCTTGCCCCTTC
TAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGAAAGCAGAGTATCTAGG
GTAGGGAGTGGAAAACATTCCACTCATAAGCACATTGAAACTTCTTAGAGTTCAGACACC
TGCTGTCACTTCAGCATTAACTTTATGACTAGCAGTCTCGCAGTACACATCAGGTGAAGT
CCCACCAAGGATTTTAAATAGATTTCAATGACTTTACATT..........

Sequence Detail Report

Gene Symbol (Gene ID) Mrpl15 (ENSMUSG00000033845)
Transcript ID ENSMUST00000156816
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 296 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information